PDB Short entry for 1R20 HEADER HORMONE/GROWTH FACTOR RECEPTOR 25-SEP-03 1R20 TITLE CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAINS OF THE TITLE 2 HETERODIMER ECR/USP BOUND TO THE SYNTHETIC AGONIST BYI06830 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ULTRASPIRACLE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ECDYSONE RECEPTOR; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 3 ORGANISM_COMMON: TOBACCO BUDWORM; SOURCE 4 ORGANISM_TAXID: 7102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PACYC11B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 11 ORGANISM_COMMON: TOBACCO BUDWORM; SOURCE 12 ORGANISM_TAXID: 7102; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS NUCLEAR RECEPTOR, HETERODIMER, ALPHA-HELICAL SANDWICH, KEYWDS 2 STRUCTURAL PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS, KEYWDS 3 HORMONE/GROWTH FACTOR RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.M.L.BILLAS,T.IWEMA,J.M.GARNIER,A.MITSCHLER,N.ROCHEL, AUTHOR 2 D.MORAS,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 2 24-FEB-09 1R20 1 VERSN REVDAT 1 18-NOV-03 1R20 0 JRNL AUTH I.M.L.BILLAS,T.IWEMA,J.M.GARNIER,A.MITSCHLER, JRNL AUTH 2 N.ROCHEL,D.MORAS JRNL TITL STRUCTURAL ADAPTABILITY IN THE LIGAND-BINDING JRNL TITL 2 POCKET OF THE ECDYSONE HORMONE RECEPTOR. JRNL REF NATURE V. 426 91 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 14595375 JRNL DOI 10.1038/NATURE02112 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R20 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-02; 14-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-4; ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393; 0.9393 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111); REMARK 200 SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15421 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, PEG 8000, MGCL2, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.05800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 204 REMARK 465 VAL A 205 REMARK 465 GLU A 305 REMARK 465 ARG A 306 REMARK 465 ASP A 307 REMARK 465 GLY A 308 REMARK 465 VAL A 309 REMARK 465 ASP A 310 REMARK 465 GLY A 311 REMARK 465 THR A 312 REMARK 465 GLY A 313 REMARK 465 ASN A 314 REMARK 465 ARG A 315 REMARK 465 ASN A 456 REMARK 465 HIS A 457 REMARK 465 ALA A 458 REMARK 465 PRO A 459 REMARK 465 PRO A 460 REMARK 465 ILE A 461 REMARK 465 ASP A 462 REMARK 465 THR A 463 REMARK 465 ASN A 464 REMARK 465 MET A 465 REMARK 465 MET A 466 REMARK 465 GLY D 268 REMARK 465 SER D 269 REMARK 465 HIS D 270 REMARK 465 MET D 271 REMARK 465 ALA D 272 REMARK 465 SER D 273 REMARK 465 MET D 274 REMARK 465 THR D 275 REMARK 465 GLY D 276 REMARK 465 GLY D 277 REMARK 465 GLN D 278 REMARK 465 GLN D 279 REMARK 465 MET D 280 REMARK 465 GLY D 281 REMARK 465 ARG D 282 REMARK 465 ASP D 283 REMARK 465 PRO D 284 REMARK 465 LYS D 285 REMARK 465 ASN D 286 REMARK 465 VAL D 319 REMARK 465 THR D 320 REMARK 465 GLN D 321 REMARK 465 THR D 322 REMARK 465 TRP D 323 REMARK 465 GLN D 324 REMARK 465 SER D 325 REMARK 465 ASP D 326 REMARK 465 GLU D 327 REMARK 465 ASP D 328 REMARK 465 ASP D 329 REMARK 465 GLU D 330 REMARK 465 ASP D 331 REMARK 465 SER D 332 REMARK 465 ALA D 529 REMARK 465 ASP D 530 REMARK 465 VAL D 531 REMARK 465 ALA D 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 206 CG CD OE1 NE2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 THR A 316 CB OG1 CG2 REMARK 470 THR A 317 CB OG1 CG2 REMARK 470 SER A 318 CB OG REMARK 470 ASP D 389 CG OD1 OD2 REMARK 470 ARG D 482 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 517 CG CD CE NZ REMARK 470 VAL D 528 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 329 SD MET A 329 4556 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 329 SD MET A 329 CE 0.346 REMARK 500 PHE D 360 CE1 PHE D 360 CZ 0.135 REMARK 500 CYS D 426 CB CYS D 426 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 422 C - N - CA ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 219 105.87 -54.90 REMARK 500 ALA A 221 -160.39 -51.42 REMARK 500 PRO A 223 61.08 -62.34 REMARK 500 SER A 224 -98.21 -84.69 REMARK 500 PRO A 240 -54.44 -29.35 REMARK 500 ILE A 267 132.61 -34.75 REMARK 500 HIS A 269 -26.68 80.16 REMARK 500 SER A 285 -3.42 -149.97 REMARK 500 SER A 298 0.13 -63.70 REMARK 500 PRO A 320 105.06 -57.19 REMARK 500 PRO A 327 136.14 -29.67 REMARK 500 MET A 329 85.95 -167.14 REMARK 500 GLN A 338 -19.45 -46.09 REMARK 500 VAL A 341 21.43 -79.85 REMARK 500 VAL A 348 -73.42 -56.22 REMARK 500 LEU A 352 -66.61 -126.67 REMARK 500 ARG A 405 -2.32 -59.17 REMARK 500 SER A 406 -92.23 -115.08 REMARK 500 LEU A 418 -9.88 -58.54 REMARK 500 THR D 291 -161.75 -63.44 REMARK 500 TYR D 304 42.14 -74.38 REMARK 500 GLN D 305 -42.12 -140.12 REMARK 500 TYR D 308 34.42 -87.64 REMARK 500 GLU D 309 102.62 -47.99 REMARK 500 PRO D 311 98.29 -52.02 REMARK 500 GLU D 314 -4.32 -46.92 REMARK 500 ASP D 315 106.13 -55.06 REMARK 500 PRO D 335 15.80 -55.22 REMARK 500 PHE D 336 -19.50 -47.55 REMARK 500 MET D 342 -71.97 -38.14 REMARK 500 ALA D 354 -4.05 -56.44 REMARK 500 LYS D 355 -66.45 -105.44 REMARK 500 PRO D 358 55.65 -45.67 REMARK 500 PHE D 360 -82.59 -23.06 REMARK 500 SER D 361 -52.92 -27.18 REMARK 500 SER D 364 179.52 -56.81 REMARK 500 GLN D 365 -101.24 -73.57 REMARK 500 SER D 366 -27.26 -39.42 REMARK 500 ILE D 369 -14.04 -48.01 REMARK 500 TYR D 388 107.17 -43.80 REMARK 500 ASP D 393 56.29 74.19 REMARK 500 LEU D 396 77.96 -112.29 REMARK 500 ASN D 399 40.94 24.96 REMARK 500 ALA D 402 -98.59 -33.98 REMARK 500 ASP D 406 -77.90 -78.17 REMARK 500 ASP D 433 -147.08 -68.87 REMARK 500 HIS D 436 -71.28 -49.15 REMARK 500 ILE D 461 -73.89 -71.17 REMARK 500 SER D 478 64.23 39.86 REMARK 500 ALA D 479 13.26 50.47 REMARK 500 ILE D 509 -38.26 -37.53 REMARK 500 LEU D 513 43.92 -102.36 REMARK 500 LYS D 514 20.24 -144.86 REMARK 500 ASN D 515 98.15 51.14 REMARK 500 PRO D 520 1.76 -54.56 REMARK 500 GLU D 524 -82.83 -66.21 REMARK 500 TRP D 526 50.93 -96.46 REMARK 500 ASP D 527 148.37 -25.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HWG D 2000 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPH A 4000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R1K RELATED DB: PDB REMARK 900 RELATED ID: IGBMC-0090-000 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SUITABLE SEQUENCE DATABASE REFERENCE WAS REMARK 999 AVAILABLE FOR CHAINS A OR D, AT THE TIME OF REMARK 999 PROCESSING THIS FILE. IN CHAIN D THE FOLLOWING REMARK 999 RESIDUES WERE MUTATED COMPARED TO THE WILD- REMARK 999 TYPE PROTEIN: W303Y, A361S, L456S, C483S. DBREF 1R20 A 205 466 UNP Q7SIF6 Q7SIF6_HELVI 3 264 DBREF 1R20 D 285 532 UNP O18473 ECR_HELVI 306 550 SEQRES 1 A 263 MET VAL GLN GLU LEU SER ILE GLU ARG LEU LEU GLU MET SEQRES 2 A 263 GLU SER LEU VAL ALA ASP PRO SER GLU GLU PHE GLN PHE SEQRES 3 A 263 LEU ARG VAL GLY PRO ASP SER ASN VAL PRO PRO LYS PHE SEQRES 4 A 263 ARG ALA PRO VAL SER SER LEU CYS GLN ILE GLY ASN LYS SEQRES 5 A 263 GLN ILE ALA ALA LEU VAL VAL TRP ALA ARG ASP ILE PRO SEQRES 6 A 263 HIS PHE SER GLN LEU GLU MET GLU ASP GLN ILE LEU LEU SEQRES 7 A 263 ILE LYS GLY SER TRP ASN GLU LEU LEU LEU PHE ALA ILE SEQRES 8 A 263 ALA TRP ARG SER MET GLU PHE LEU THR GLU GLU ARG ASP SEQRES 9 A 263 GLY VAL ASP GLY THR GLY ASN ARG THR THR SER PRO PRO SEQRES 10 A 263 GLN LEU MET CYS LEU MET PRO GLY MET THR LEU HIS ARG SEQRES 11 A 263 ASN SER ALA LEU GLN ALA GLY VAL GLY GLN ILE PHE ASP SEQRES 12 A 263 ARG VAL LEU SER GLU LEU SER LEU LYS MET ARG THR LEU SEQRES 13 A 263 ARG VAL ASP GLN ALA GLU TYR VAL ALA LEU LYS ALA ILE SEQRES 14 A 263 ILE LEU LEU ASN PRO ASP VAL LYS GLY LEU LYS ASN ARG SEQRES 15 A 263 GLN GLU VAL GLU VAL LEU ARG GLU LYS MET PHE LEU CYS SEQRES 16 A 263 LEU ASP GLU TYR CYS ARG ARG SER ARG SER SER GLU GLU SEQRES 17 A 263 GLY ARG PHE ALA ALA LEU LEU LEU ARG LEU PRO ALA LEU SEQRES 18 A 263 ARG SER ILE SER LEU LYS SER PHE GLU HIS LEU PHE PHE SEQRES 19 A 263 PHE HIS LEU VAL ALA ASP THR SER ILE ALA GLY TYR ILE SEQRES 20 A 263 ARG ASP ALA LEU ARG ASN HIS ALA PRO PRO ILE ASP THR SEQRES 21 A 263 ASN MET MET SEQRES 1 D 265 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 D 265 GLY ARG ASP PRO LYS ASN VAL PRO PRO LEU THR ALA ASN SEQRES 3 D 265 GLN LYS SER LEU ILE ALA ARG LEU VAL TYR TYR GLN GLU SEQRES 4 D 265 GLY TYR GLU GLN PRO SER GLU GLU ASP LEU LYS ARG VAL SEQRES 5 D 265 THR GLN THR TRP GLN SER ASP GLU ASP ASP GLU ASP SER SEQRES 6 D 265 ASP MET PRO PHE ARG GLN ILE THR GLU MET THR ILE LEU SEQRES 7 D 265 THR VAL GLN LEU ILE VAL GLU PHE ALA LYS GLY LEU PRO SEQRES 8 D 265 GLY PHE SER LYS ILE SER GLN SER ASP GLN ILE THR LEU SEQRES 9 D 265 LEU LYS ALA CYS SER SER GLU VAL MET MET LEU ARG VAL SEQRES 10 D 265 ALA ARG ARG TYR ASP ALA ALA THR ASP SER VAL LEU PHE SEQRES 11 D 265 ALA ASN ASN GLN ALA TYR THR ARG ASP ASN TYR ARG LYS SEQRES 12 D 265 ALA GLY MET ALA TYR VAL ILE GLU ASP LEU LEU HIS PHE SEQRES 13 D 265 CYS ARG CYS MET TYR SER MET MET MET ASP ASN VAL HIS SEQRES 14 D 265 TYR ALA LEU LEU THR ALA ILE VAL ILE PHE SER ASP ARG SEQRES 15 D 265 PRO GLY LEU GLU GLN PRO SER LEU VAL GLU GLU ILE GLN SEQRES 16 D 265 ARG TYR TYR LEU ASN THR LEU ARG VAL TYR ILE LEU ASN SEQRES 17 D 265 GLN ASN SER ALA SER PRO ARG SER ALA VAL ILE PHE GLY SEQRES 18 D 265 LYS ILE LEU GLY ILE LEU THR GLU ILE ARG THR LEU GLY SEQRES 19 D 265 MET GLN ASN SER ASN MET CYS ILE SER LEU LYS LEU LYS SEQRES 20 D 265 ASN ARG LYS LEU PRO PRO PHE LEU GLU GLU ILE TRP ASP SEQRES 21 D 265 VAL ALA ASP VAL ALA HET HWG D2000 29 HET EPH A4000 49 HETNAM HWG N-(TERT-BUTYL)-3,5-DIMETHYL-N'-[(5-METHYL-2,3-DIHYDRO- HETNAM 2 HWG 1,4-BENZODIOXIN-6-YL)CARBONYL]BENZOHYDRAZIDE HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETSYN HWG 3,5-DIMETHYL-BENZOIC ACID N-TERT-BUTYL-N'-(5-METHYL-2, HETSYN 2 HWG 3-DIHYDRO-BENZO[1,4]DIOXINE-6-CARBONYL)-HYDRAZIDE, HETSYN 3 HWG BYI6830 FORMUL 3 HWG C23 H28 N2 O4 FORMUL 4 EPH C39 H68 N O8 P FORMUL 5 HOH *11(H2 O) HELIX 1 1 SER A 209 LEU A 219 1 11 HELIX 2 2 PRO A 239 ARG A 243 5 5 HELIX 3 3 ALA A 244 ILE A 267 1 24 HELIX 4 4 HIS A 269 LEU A 273 5 5 HELIX 5 5 GLU A 274 GLY A 284 1 11 HELIX 6 6 SER A 285 SER A 298 1 14 HELIX 7 7 ARG A 333 GLN A 338 1 6 HELIX 8 8 VAL A 341 LEU A 352 1 12 HELIX 9 9 LEU A 352 ARG A 360 1 9 HELIX 10 10 ASP A 362 LEU A 375 1 14 HELIX 11 11 ARG A 385 SER A 406 1 22 HELIX 12 12 GLY A 412 LEU A 419 1 8 HELIX 13 13 LEU A 419 PHE A 438 1 20 HELIX 14 14 ALA A 442 ARG A 455 1 14 HELIX 15 15 THR D 291 GLY D 307 1 17 HELIX 16 16 PRO D 335 ALA D 354 1 20 HELIX 17 17 GLY D 359 ILE D 363 5 5 HELIX 18 18 SER D 364 ARG D 386 1 23 HELIX 19 19 THR D 404 ALA D 411 1 8 HELIX 20 20 MET D 413 SER D 429 1 17 HELIX 21 21 ASN D 434 PHE D 446 1 13 HELIX 22 22 GLN D 454 ASN D 477 1 24 HELIX 23 23 PRO D 481 LEU D 513 1 33 HELIX 24 24 PHE D 521 TRP D 526 1 6 SHEET 1 A 2 LEU A 322 MET A 326 0 SHEET 2 A 2 MET A 329 HIS A 332 -1 O LEU A 331 N MET A 323 SHEET 1 B 2 TYR D 388 ASP D 389 0 SHEET 2 B 2 SER D 394 VAL D 395 -1 O SER D 394 N ASP D 389 SITE 1 AC1 12 THR D 343 SER D 377 MET D 380 VAL D 384 SITE 2 AC1 12 TYR D 408 MET D 413 VAL D 416 LEU D 420 SITE 3 AC1 12 LEU D 500 GLN D 503 ASN D 504 MET D 507 SITE 1 AC2 13 LEU A 230 VAL A 238 PRO A 239 PHE A 242 SITE 2 AC2 13 VAL A 246 LEU A 249 MET A 323 LEU A 331 SITE 3 AC2 13 GLN A 338 VAL A 341 SER A 431 PHE A 438 SITE 4 AC2 13 LEU A 440 CRYST1 149.429 149.429 61.058 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006692 0.003864 0.000000 0.00000 SCALE2 0.000000 0.007727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016378 0.00000