PDB Short entry for 1R36 HEADER TRANSCRIPTION 30-SEP-03 1R36 TITLE NMR-BASED STRUCTURE OF AUTOINHIBITED MURINE ETS-1 DELTAN301 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-ETS-1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AUTOINHIBITION MODULE, RESIDUES 301-440; COMPND 5 SYNONYM: ETS-1 DELTAN301; P54; E26 AVIAN LEUKEMIA ONCOGENE 1, 5' COMPND 6 DOMAIN; ETS1 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSCRIPTION FACTOR; AUTOINHIBITION MODULE; WINGED HELIX-TURN-HELIX; KEYWDS 2 HELICAL BUNDLE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR G.M.LEE,L.W.DONALDSON,M.A.PUFALL,H.-S.KANG,I.POT,B.J.GRAVES, AUTHOR 2 L.P.MCINTOSH REVDAT 5 27-OCT-21 1R36 1 SEQADV REVDAT 4 05-FEB-20 1R36 1 REMARK ATOM REVDAT 3 24-FEB-09 1R36 1 VERSN REVDAT 2 01-MAR-05 1R36 1 JRNL REVDAT 1 09-NOV-04 1R36 0 SPRSDE 09-NOV-04 1R36 1ETC 1ETD JRNL AUTH G.M.LEE,L.W.DONALDSON,M.A.PUFALL,H.-S.KANG,I.POT,B.J.GRAVES, JRNL AUTH 2 L.P.MCINTOSH JRNL TITL THE STRUCTURAL AND DYNAMIC BASIS OF ETS-1 DNA BINDING JRNL TITL 2 AUTOINHIBITION JRNL REF J.BIOL.CHEM. V. 280 7088 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15591056 JRNL DOI 10.1074/JBC.M410722200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000, ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : ACCELRYS, INC. (FELIX), LINGE, J., ET AL. (ARIA), REMARK 3 BRUNGER, A., ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 3268 UNAMBIGUOUS AND 537 AMBIGUOUS NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 237 DIHEDRAL ANGLE RESTRAINTS, 80 HYDROGEN BOND REMARK 3 RESTRAINTS, AND 49 RESIDUAL DIPOLAR COUPLING RESTRAINTS. REMARK 4 REMARK 4 1R36 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020379. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 500MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.8MM ETS-1 DN301, U-15N; REMARK 210 20MM PHOSPHATE (PH 6.5), 500MM REMARK 210 NACL, 5MM DTT, 0.02% NAN3; 0.3- REMARK 210 0.8MM ETS-1 DN301, U-15N, U-13C; REMARK 210 20MM PHOSPHATE (PH 6.5), 500MM REMARK 210 NACL, 5MM DTT, 0.02% NAN3; 0.3- REMARK 210 0.8MM ETS-1 DN301, U-15N, U-13C, REMARK 210 U-2H; 20MM PHOSPHATE (PH 6.5), REMARK 210 500MM NACL, 5MM DTT, 0.02% NAN3; REMARK 210 0.3-0.8MM ETS-1 DN301, U-15N, U- REMARK 210 10% 13C; 20MM PHOSPHATE (PH 6.5), REMARK 210 500MM NACL, 5MM DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; REMARK 210 3D_SIMULTANEOUS_ALIPHATIC_15N-13C-NOESY; 3D_15N-15N-1H-NOESY; 3D_ REMARK 210 SIMULTANEOUS_AROMATIC_15N-13C-NOESY; 3D_SIMULTANEOUS_METHYL_15N- REMARK 210 13C-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE SGI6X REMARK 210 METHOD USED : MOLECULAR DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB VAL A 320 HB THR A 346 1.20 REMARK 500 O LEU A 342 HG1 THR A 346 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 5 TYR A 412 CE1 TYR A 412 CZ 0.078 REMARK 500 5 TYR A 412 CZ TYR A 412 CE2 -0.081 REMARK 500 6 TYR A 412 CE1 TYR A 412 CZ 0.088 REMARK 500 6 TYR A 412 CZ TYR A 412 CE2 -0.087 REMARK 500 8 TYR A 412 CE1 TYR A 412 CZ 0.105 REMARK 500 8 TYR A 412 CZ TYR A 412 CE2 -0.097 REMARK 500 16 TYR A 412 CE1 TYR A 412 CZ 0.080 REMARK 500 16 TYR A 412 CZ TYR A 412 CE2 -0.080 REMARK 500 25 TYR A 412 CE1 TYR A 412 CZ 0.084 REMARK 500 25 TYR A 412 CZ TYR A 412 CE2 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 311 -83.61 -117.45 REMARK 500 1 ASP A 313 33.13 -145.60 REMARK 500 1 LEU A 314 -77.63 -69.35 REMARK 500 1 ASN A 315 -56.22 -139.10 REMARK 500 1 ASP A 317 83.60 -54.64 REMARK 500 1 LYS A 318 -55.98 -127.11 REMARK 500 1 ILE A 335 157.34 61.07 REMARK 500 1 ILE A 354 86.98 -165.00 REMARK 500 1 LYS A 383 38.64 -91.02 REMARK 500 1 LYS A 404 96.67 -64.21 REMARK 500 1 ASP A 417 97.68 59.36 REMARK 500 2 THR A 303 -160.64 -78.76 REMARK 500 2 ARG A 311 -74.41 -131.58 REMARK 500 2 ASP A 313 48.61 -156.30 REMARK 500 2 LEU A 314 -77.94 -71.69 REMARK 500 2 ASN A 315 -66.65 -141.30 REMARK 500 2 LYS A 316 36.48 -94.16 REMARK 500 2 ASP A 317 80.27 -60.94 REMARK 500 2 ILE A 335 131.86 63.79 REMARK 500 2 ILE A 354 88.19 -165.55 REMARK 500 2 ASP A 367 78.12 -115.16 REMARK 500 2 LYS A 404 95.95 -69.30 REMARK 500 3 THR A 303 -158.56 -84.14 REMARK 500 3 ARG A 311 -79.13 -118.75 REMARK 500 3 ASP A 313 56.19 -148.86 REMARK 500 3 LEU A 314 -74.04 -86.46 REMARK 500 3 ASN A 315 -62.99 -146.93 REMARK 500 3 ASP A 317 41.31 38.38 REMARK 500 3 ILE A 335 170.86 60.16 REMARK 500 3 ILE A 354 88.33 -166.25 REMARK 500 3 ASP A 367 79.47 -117.29 REMARK 500 3 LYS A 404 101.14 -59.18 REMARK 500 3 PRO A 437 11.51 -63.40 REMARK 500 4 THR A 303 -160.64 -77.73 REMARK 500 4 ARG A 311 -69.69 -121.25 REMARK 500 4 LEU A 314 -78.66 -95.46 REMARK 500 4 ASN A 315 -53.45 -144.08 REMARK 500 4 ASP A 317 26.85 45.64 REMARK 500 4 ILE A 335 -179.87 56.38 REMARK 500 4 ILE A 354 87.71 -165.45 REMARK 500 4 LYS A 383 33.67 -97.73 REMARK 500 4 TYR A 410 61.43 60.10 REMARK 500 4 PRO A 437 45.75 -73.72 REMARK 500 5 THR A 303 -159.25 -87.76 REMARK 500 5 ARG A 311 -79.06 -126.76 REMARK 500 5 ASP A 313 24.65 -145.70 REMARK 500 5 LEU A 314 -73.60 -58.94 REMARK 500 5 ASN A 315 -66.87 -143.69 REMARK 500 5 ASP A 317 -31.49 61.12 REMARK 500 5 ILE A 335 176.91 60.34 REMARK 500 REMARK 500 THIS ENTRY HAS 264 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 TYR A 412 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5991 RELATED DB: BMRB REMARK 900 THE CHEMICAL SHIFTS FOR BACKBONE AND SIDECHAIN 1H, 15N, AND 13C REMARK 900 ATOMS. ALSO INCLUDES THE BACKBONE 15N DYNAMICS PARAMETERS (T1, T2, REMARK 900 1H{15N}NOE, S2). DBREF 1R36 A 301 440 UNP P27577 ETS1_MOUSE 301 440 SEQADV 1R36 SER A 416 UNP P27577 CYS 416 ENGINEERED MUTATION SEQRES 1 A 140 LYS GLY THR PHE LYS ASP TYR VAL ARG ASP ARG ALA ASP SEQRES 2 A 140 LEU ASN LYS ASP LYS PRO VAL ILE PRO ALA ALA ALA LEU SEQRES 3 A 140 ALA GLY TYR THR GLY SER GLY PRO ILE GLN LEU TRP GLN SEQRES 4 A 140 PHE LEU LEU GLU LEU LEU THR ASP LYS SER CYS GLN SER SEQRES 5 A 140 PHE ILE SER TRP THR GLY ASP GLY TRP GLU PHE LYS LEU SEQRES 6 A 140 SER ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY LYS ARG SEQRES 7 A 140 LYS ASN LYS PRO LYS MET ASN TYR GLU LYS LEU SER ARG SEQRES 8 A 140 GLY LEU ARG TYR TYR TYR ASP LYS ASN ILE ILE HIS LYS SEQRES 9 A 140 THR ALA GLY LYS ARG TYR VAL TYR ARG PHE VAL SER ASP SEQRES 10 A 140 LEU GLN SER LEU LEU GLY TYR THR PRO GLU GLU LEU HIS SEQRES 11 A 140 ALA MET LEU ASP VAL LYS PRO ASP ALA ASP HELIX 1 1 PHE A 304 ASP A 310 1 7 HELIX 2 2 ALA A 323 THR A 330 1 8 HELIX 3 3 LEU A 337 THR A 346 1 10 HELIX 4 4 PRO A 368 ARG A 378 1 11 HELIX 5 5 TYR A 386 ASP A 398 1 13 HELIX 6 6 LEU A 418 LEU A 422 1 5 HELIX 7 7 PRO A 426 ALA A 431 1 6 SHEET 1 A 4 ILE A 354 TRP A 356 0 SHEET 2 A 4 GLU A 362 LEU A 365 -1 O LYS A 364 N SER A 355 SHEET 3 A 4 ILE A 402 THR A 405 -1 N HIS A 403 O ARG A 413 SHEET 4 A 4 VAL A 411 PHE A 414 -1 O TYR A 412 N PHE A 363 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000