PDB Short entry for 1R45 HEADER TRANSFERASE 03-OCT-03 1R45 TITLE ADP-RIBOSYLTRANSFERASE C3BOT2 FROM CLOSTRIDIUM BOTULINUM, TRICLINIC TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONO-ADP-RIBOSYLTRANSFERASE C3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: MATURE PROTEIN; COMPND 5 SYNONYM: EXOENZYME C3; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHAGE C-ST; SOURCE 3 ORGANISM_TAXID: 12336; SOURCE 4 STRAIN: C003-9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ADP-RIBOSYLTRANSFERASE, BINARY TOXIN, C3 EXOENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND,S.NARUMIYA REVDAT 5 23-AUG-23 1R45 1 REMARK REVDAT 4 03-OCT-18 1R45 1 REMARK REVDAT 3 13-JUL-11 1R45 1 VERSN REVDAT 2 24-FEB-09 1R45 1 VERSN REVDAT 1 16-NOV-04 1R45 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND,S.NARUMIYA JRNL TITL CRYSTAL STRUCTURE OF ADP-RIBOSYLTRANSFERASE C3BOT2 FROM JRNL TITL 2 CLOSTRIDIUM BOTULINUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 114713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3554 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7890 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1620 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 907 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.05000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6620 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8905 ; 1.416 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 798 ; 5.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 937 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4964 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3403 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 659 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 109 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3994 ; 2.249 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6466 ; 3.744 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2626 ; 6.010 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2439 ; 8.558 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : GERMANIUM REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.06800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 12.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1G24-A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 7% PEG 4000, REMARK 280 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 13.81192 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 17.74450 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -106.34874 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 41 REMARK 465 TYR A 42 REMARK 465 ALA A 43 REMARK 465 SER B 41 REMARK 465 TYR B 42 REMARK 465 ALA B 43 REMARK 465 SER C 41 REMARK 465 TYR C 42 REMARK 465 ALA C 43 REMARK 465 ASP C 44 REMARK 465 SER D 41 REMARK 465 TYR D 42 REMARK 465 ALA D 43 REMARK 465 ASP D 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 178 CB MET A 178 CG 0.204 REMARK 500 MET B 178 CB MET B 178 CG 0.219 REMARK 500 MET D 241 CB MET D 241 CG 0.270 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 234 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 234 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG D 234 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 234 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 96.66 -165.76 REMARK 500 ASP B 82 96.78 -166.76 REMARK 500 ASP C 82 95.84 -166.11 REMARK 500 GLN C 94 45.05 35.55 REMARK 500 ASP D 82 92.45 -169.77 REMARK 500 ASN D 96 95.06 -65.06 REMARK 500 GLU D 97 26.50 -76.41 REMARK 500 ASN D 195 131.11 -37.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G24 RELATED DB: PDB REMARK 900 ADP-RIBOSYLTRANSFERASE C3BOT1 REMARK 900 RELATED ID: 1GZE RELATED DB: PDB REMARK 900 ADP-RIBOSYLTRANSFERASE C3BOT1 REMARK 900 RELATED ID: 1GZF RELATED DB: PDB REMARK 900 ADP-RIBOSYLTRANSFERASE C3BOT1 WITH NAD DBREF 1R45 A 41 244 UNP Q00901 ARC3_CBCP 41 244 DBREF 1R45 B 41 244 UNP Q00901 ARC3_CBCP 41 244 DBREF 1R45 C 41 244 UNP Q00901 ARC3_CBCP 41 244 DBREF 1R45 D 41 244 UNP Q00901 ARC3_CBCP 41 244 SEQRES 1 A 204 SER TYR ALA ASP THR PHE THR GLU PHE THR ASN VAL GLU SEQRES 2 A 204 GLU ALA LYS LYS TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 A 204 GLY LEU SER LYS PRO GLU GLN GLU ALA ILE LYS PHE TYR SEQRES 4 A 204 THR ARG ASP ALA SER LYS ILE ASN GLY PRO LEU ARG ALA SEQRES 5 A 204 ASN GLN GLY ASN GLU ASN GLY LEU PRO ALA ASP ILE LEU SEQRES 6 A 204 GLN LYS VAL LYS LEU ILE ASP GLN SER PHE SER LYS MET SEQRES 7 A 204 LYS MET PRO GLN ASN ILE ILE LEU PHE ARG GLY ASP ASP SEQRES 8 A 204 PRO ALA TYR LEU GLY PRO GLU PHE GLN ASP LYS ILE LEU SEQRES 9 A 204 ASN LYS ASP GLY THR ILE ASN LYS THR VAL PHE GLU GLN SEQRES 10 A 204 VAL LYS ALA LYS PHE LEU LYS LYS ASP ARG THR GLU TYR SEQRES 11 A 204 GLY TYR ILE SER THR SER LEU MET SER ALA GLN PHE GLY SEQRES 12 A 204 GLY ARG PRO ILE VAL THR LYS PHE LYS VAL THR ASN GLY SEQRES 13 A 204 SER LYS GLY GLY TYR ILE ASP PRO ILE SER TYR PHE PRO SEQRES 14 A 204 GLY GLN LEU GLU VAL LEU LEU PRO ARG ASN ASN SER TYR SEQRES 15 A 204 TYR ILE SER ASP MET GLN ILE SER PRO ASN ASN ARG GLN SEQRES 16 A 204 ILE MET ILE THR ALA MET ILE PHE LYS SEQRES 1 B 204 SER TYR ALA ASP THR PHE THR GLU PHE THR ASN VAL GLU SEQRES 2 B 204 GLU ALA LYS LYS TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 B 204 GLY LEU SER LYS PRO GLU GLN GLU ALA ILE LYS PHE TYR SEQRES 4 B 204 THR ARG ASP ALA SER LYS ILE ASN GLY PRO LEU ARG ALA SEQRES 5 B 204 ASN GLN GLY ASN GLU ASN GLY LEU PRO ALA ASP ILE LEU SEQRES 6 B 204 GLN LYS VAL LYS LEU ILE ASP GLN SER PHE SER LYS MET SEQRES 7 B 204 LYS MET PRO GLN ASN ILE ILE LEU PHE ARG GLY ASP ASP SEQRES 8 B 204 PRO ALA TYR LEU GLY PRO GLU PHE GLN ASP LYS ILE LEU SEQRES 9 B 204 ASN LYS ASP GLY THR ILE ASN LYS THR VAL PHE GLU GLN SEQRES 10 B 204 VAL LYS ALA LYS PHE LEU LYS LYS ASP ARG THR GLU TYR SEQRES 11 B 204 GLY TYR ILE SER THR SER LEU MET SER ALA GLN PHE GLY SEQRES 12 B 204 GLY ARG PRO ILE VAL THR LYS PHE LYS VAL THR ASN GLY SEQRES 13 B 204 SER LYS GLY GLY TYR ILE ASP PRO ILE SER TYR PHE PRO SEQRES 14 B 204 GLY GLN LEU GLU VAL LEU LEU PRO ARG ASN ASN SER TYR SEQRES 15 B 204 TYR ILE SER ASP MET GLN ILE SER PRO ASN ASN ARG GLN SEQRES 16 B 204 ILE MET ILE THR ALA MET ILE PHE LYS SEQRES 1 C 204 SER TYR ALA ASP THR PHE THR GLU PHE THR ASN VAL GLU SEQRES 2 C 204 GLU ALA LYS LYS TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 C 204 GLY LEU SER LYS PRO GLU GLN GLU ALA ILE LYS PHE TYR SEQRES 4 C 204 THR ARG ASP ALA SER LYS ILE ASN GLY PRO LEU ARG ALA SEQRES 5 C 204 ASN GLN GLY ASN GLU ASN GLY LEU PRO ALA ASP ILE LEU SEQRES 6 C 204 GLN LYS VAL LYS LEU ILE ASP GLN SER PHE SER LYS MET SEQRES 7 C 204 LYS MET PRO GLN ASN ILE ILE LEU PHE ARG GLY ASP ASP SEQRES 8 C 204 PRO ALA TYR LEU GLY PRO GLU PHE GLN ASP LYS ILE LEU SEQRES 9 C 204 ASN LYS ASP GLY THR ILE ASN LYS THR VAL PHE GLU GLN SEQRES 10 C 204 VAL LYS ALA LYS PHE LEU LYS LYS ASP ARG THR GLU TYR SEQRES 11 C 204 GLY TYR ILE SER THR SER LEU MET SER ALA GLN PHE GLY SEQRES 12 C 204 GLY ARG PRO ILE VAL THR LYS PHE LYS VAL THR ASN GLY SEQRES 13 C 204 SER LYS GLY GLY TYR ILE ASP PRO ILE SER TYR PHE PRO SEQRES 14 C 204 GLY GLN LEU GLU VAL LEU LEU PRO ARG ASN ASN SER TYR SEQRES 15 C 204 TYR ILE SER ASP MET GLN ILE SER PRO ASN ASN ARG GLN SEQRES 16 C 204 ILE MET ILE THR ALA MET ILE PHE LYS SEQRES 1 D 204 SER TYR ALA ASP THR PHE THR GLU PHE THR ASN VAL GLU SEQRES 2 D 204 GLU ALA LYS LYS TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 D 204 GLY LEU SER LYS PRO GLU GLN GLU ALA ILE LYS PHE TYR SEQRES 4 D 204 THR ARG ASP ALA SER LYS ILE ASN GLY PRO LEU ARG ALA SEQRES 5 D 204 ASN GLN GLY ASN GLU ASN GLY LEU PRO ALA ASP ILE LEU SEQRES 6 D 204 GLN LYS VAL LYS LEU ILE ASP GLN SER PHE SER LYS MET SEQRES 7 D 204 LYS MET PRO GLN ASN ILE ILE LEU PHE ARG GLY ASP ASP SEQRES 8 D 204 PRO ALA TYR LEU GLY PRO GLU PHE GLN ASP LYS ILE LEU SEQRES 9 D 204 ASN LYS ASP GLY THR ILE ASN LYS THR VAL PHE GLU GLN SEQRES 10 D 204 VAL LYS ALA LYS PHE LEU LYS LYS ASP ARG THR GLU TYR SEQRES 11 D 204 GLY TYR ILE SER THR SER LEU MET SER ALA GLN PHE GLY SEQRES 12 D 204 GLY ARG PRO ILE VAL THR LYS PHE LYS VAL THR ASN GLY SEQRES 13 D 204 SER LYS GLY GLY TYR ILE ASP PRO ILE SER TYR PHE PRO SEQRES 14 D 204 GLY GLN LEU GLU VAL LEU LEU PRO ARG ASN ASN SER TYR SEQRES 15 D 204 TYR ILE SER ASP MET GLN ILE SER PRO ASN ASN ARG GLN SEQRES 16 D 204 ILE MET ILE THR ALA MET ILE PHE LYS HET SO4 A1003 5 HET SO4 A1005 5 HET SO4 A1009 5 HET GOL A1001 6 HET SO4 B1004 5 HET SO4 B1006 5 HET SO4 B1010 5 HET GOL B1002 6 HET SO4 C1007 5 HET SO4 D1008 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 8(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 15 HOH *907(H2 O) HELIX 1 1 ASN A 51 LYS A 64 1 14 HELIX 2 2 SER A 69 ASP A 82 1 14 HELIX 3 3 ALA A 83 ASN A 93 1 11 HELIX 4 4 ASN A 96 LEU A 100 5 5 HELIX 5 5 PRO A 101 PHE A 115 1 15 HELIX 6 6 ASP A 131 LEU A 135 5 5 HELIX 7 7 GLY A 136 ASP A 141 1 6 HELIX 8 8 ASN A 151 LEU A 163 1 13 HELIX 9 9 SER A 179 GLY A 183 5 5 HELIX 10 10 ASP A 203 SER A 206 5 4 HELIX 11 11 ASN B 51 LYS B 64 1 14 HELIX 12 12 SER B 69 ASP B 82 1 14 HELIX 13 13 ALA B 83 ASN B 93 1 11 HELIX 14 14 ASN B 96 LEU B 100 5 5 HELIX 15 15 PRO B 101 PHE B 115 1 15 HELIX 16 16 ASP B 131 LEU B 135 5 5 HELIX 17 17 GLY B 136 ASP B 141 1 6 HELIX 18 18 ASN B 151 LEU B 163 1 13 HELIX 19 19 SER B 179 GLY B 183 5 5 HELIX 20 20 ASP B 203 SER B 206 5 4 HELIX 21 21 ASN C 51 LYS C 64 1 14 HELIX 22 22 SER C 69 ASP C 82 1 14 HELIX 23 23 ALA C 83 ASN C 93 1 11 HELIX 24 24 ASN C 96 LEU C 100 5 5 HELIX 25 25 PRO C 101 PHE C 115 1 15 HELIX 26 26 SER C 116 MET C 118 5 3 HELIX 27 27 ASP C 131 GLY C 136 5 6 HELIX 28 28 ASN C 151 LEU C 163 1 13 HELIX 29 29 SER C 179 GLY C 183 5 5 HELIX 30 30 ASP C 203 SER C 206 5 4 HELIX 31 31 ASN D 51 LYS D 65 1 15 HELIX 32 32 SER D 69 ASP D 82 1 14 HELIX 33 33 ALA D 83 ASN D 93 1 11 HELIX 34 34 PRO D 101 PHE D 115 1 15 HELIX 35 35 ASP D 131 LEU D 135 5 5 HELIX 36 36 GLY D 136 ASP D 141 1 6 HELIX 37 37 ASN D 151 LEU D 163 1 13 HELIX 38 38 SER D 179 GLY D 183 5 5 HELIX 39 39 ASP D 203 SER D 206 5 4 SHEET 1 A 5 ILE A 124 ASP A 130 0 SHEET 2 A 5 ILE A 187 VAL A 193 -1 O PHE A 191 N LEU A 126 SHEET 3 A 5 ILE A 236 ILE A 242 1 O ALA A 240 N LYS A 192 SHEET 4 A 5 TYR A 222 ILE A 229 -1 N GLN A 228 O MET A 237 SHEET 5 A 5 ASP A 166 ARG A 167 -1 N ARG A 167 O TYR A 222 SHEET 1 B 3 ILE A 173 SER A 176 0 SHEET 2 B 3 GLU A 213 LEU A 216 -1 O LEU A 216 N ILE A 173 SHEET 3 B 3 GLY A 200 TYR A 201 -1 N GLY A 200 O LEU A 215 SHEET 1 C 5 ILE B 124 ASP B 130 0 SHEET 2 C 5 ILE B 187 VAL B 193 -1 O PHE B 191 N LEU B 126 SHEET 3 C 5 ILE B 236 ILE B 242 1 O ALA B 240 N LYS B 192 SHEET 4 C 5 TYR B 222 ILE B 229 -1 N GLN B 228 O MET B 237 SHEET 5 C 5 ASP B 166 ARG B 167 -1 N ARG B 167 O TYR B 222 SHEET 1 D 3 ILE B 173 SER B 176 0 SHEET 2 D 3 GLU B 213 LEU B 216 -1 O LEU B 216 N ILE B 173 SHEET 3 D 3 GLY B 200 TYR B 201 -1 N GLY B 200 O LEU B 215 SHEET 1 E 5 ILE C 124 ASP C 130 0 SHEET 2 E 5 ILE C 187 VAL C 193 -1 O PHE C 191 N LEU C 126 SHEET 3 E 5 ILE C 236 ILE C 242 1 O ILE C 238 N VAL C 188 SHEET 4 E 5 ASN C 220 ILE C 229 -1 N GLN C 228 O MET C 237 SHEET 5 E 5 ASP C 166 GLU C 169 -1 N ARG C 167 O TYR C 222 SHEET 1 F 3 ILE C 173 SER C 176 0 SHEET 2 F 3 GLU C 213 LEU C 216 -1 O LEU C 216 N ILE C 173 SHEET 3 F 3 GLY C 200 TYR C 201 -1 N GLY C 200 O LEU C 215 SHEET 1 G 5 ILE D 124 ASP D 130 0 SHEET 2 G 5 ILE D 187 VAL D 193 -1 O PHE D 191 N LEU D 126 SHEET 3 G 5 ILE D 236 PHE D 243 1 O ILE D 238 N VAL D 188 SHEET 4 G 5 ASN D 220 ILE D 229 -1 N GLN D 228 O MET D 237 SHEET 5 G 5 ASP D 166 GLU D 169 -1 N GLU D 169 O ASN D 220 SHEET 1 H 3 ILE D 173 SER D 176 0 SHEET 2 H 3 GLU D 213 LEU D 216 -1 O LEU D 216 N ILE D 173 SHEET 3 H 3 GLY D 200 TYR D 201 -1 N GLY D 200 O LEU D 215 SITE 1 AC1 11 ARG A 91 ARG A 167 GOL A1001 HOH A1039 SITE 2 AC1 11 HOH A1053 HOH A1181 GLN B 94 TYR B 170 SITE 3 AC1 11 HOH B1069 HOH B1142 HOH B1153 SITE 1 AC2 12 GLN A 94 TYR A 170 ARG B 91 ARG B 167 SITE 2 AC2 12 GOL B1002 HOH B1038 HOH B1050 HOH B1051 SITE 3 AC2 12 HOH B1142 HOH B1153 HOH B1154 HOH B1250 SITE 1 AC3 8 ALA A 83 SER A 84 ASN A 87 ARG A 91 SITE 2 AC3 8 HOH A1127 HOH A1156 HOH A1186 HOH B1146 SITE 1 AC4 8 ALA B 83 SER B 84 ASN B 87 ARG B 91 SITE 2 AC4 8 HOH B1119 HOH B1149 HOH B1173 HOH B1220 SITE 1 AC5 7 ALA C 83 SER C 84 ASN C 87 ARG C 91 SITE 2 AC5 7 HOH C1086 HOH C1113 HOH C1176 SITE 1 AC6 6 ALA D 83 SER D 84 ASN D 87 ARG D 91 SITE 2 AC6 6 HOH D1095 HOH D1118 SITE 1 AC7 4 LYS A 64 GLN A 228 HOH A1061 HOH A1229 SITE 1 AC8 4 SER B 116 LYS B 119 LYS B 198 HOH B1249 SITE 1 AC9 10 ARG A 128 ASP A 130 TYR A 134 GLU A 169 SITE 2 AC9 10 SO4 A1003 HOH A1013 HOH A1127 GLN B 94 SITE 3 AC9 10 HOH B1146 HOH B1171 SITE 1 BC1 9 GLN A 94 ASP B 130 TYR B 134 GLU B 169 SITE 2 BC1 9 SO4 B1004 HOH B1024 HOH B1114 HOH B1119 SITE 3 BC1 9 HOH B1149 CRYST1 47.000 47.000 108.700 98.50 97.30 96.50 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021277 0.002424 0.003168 0.00000 SCALE2 0.000000 0.021414 0.003573 0.00000 SCALE3 0.000000 0.000000 0.009403 0.00000