PDB Short entry for 1R4O HEADER TRANSCRIPTION/DNA 07-OCT-03 1R4O TITLE CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID TITLE 2 RECEPTOR WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*CP*TP COMPND 3 *G)-3'; COMPND 4 CHAIN: C, D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 8 CHAIN: A, B; COMPND 9 FRAGMENT: DNA BINDING DOMAIN; COMPND 10 SYNONYM: GR; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: GLUCOCORTICOID RESPONSE ELEMENT WITH 4 BP OF SPACER SOURCE 4 BETWEEN HALF-SITES; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 7 ORGANISM_COMMON: NORWAY RAT; SOURCE 8 ORGANISM_TAXID: 10116; SOURCE 9 GENE: NR3C1 OR GRL; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PT7440-525 KEYWDS GR, STEROID RECEPTOR, PROTEIN-DNA COMPLEX, GLUCOCORTICOID, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN,K.R.YAMAMOTO,P.B.SIGLER REVDAT 4 23-AUG-23 1R4O 1 REMARK SEQADV LINK REVDAT 3 22-JAN-14 1R4O 1 REMARK VERSN REVDAT 2 24-FEB-09 1R4O 1 VERSN REVDAT 1 21-OCT-03 1R4O 0 JRNL AUTH B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN,K.R.YAMAMOTO, JRNL AUTH 2 P.B.SIGLER JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE JRNL TITL 2 GLUCOCORTICOID RECEPTOR WITH DNA JRNL REF NATURE V. 352 497 1991 JRNL REFN ISSN 0028-0836 JRNL PMID 1865905 JRNL DOI 10.1038/352497A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.T.GEWIRTH,P.B.SIGLER REMARK 1 TITL THE BASIS FOR HALF-SITE SPECIFICITY EXPLORED THROUGH A REMARK 1 TITL 2 NON-COGNATE STEROID RECEPTOR-DNA COMPLEX REMARK 1 REF NAT.STRUCT.BIOL. V. 2 386 1995 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1238 REMARK 3 NUCLEIC ACID ATOMS : 770 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 263 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14846 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1GLU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM CACODYLATE, SODIUM REMARK 280 CHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 514 REMARK 465 LYS A 515 REMARK 465 ILE A 516 REMARK 465 LYS A 517 REMARK 465 GLY A 518 REMARK 465 ILE A 519 REMARK 465 GLN A 520 REMARK 465 GLN A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 465 ALA A 524 REMARK 465 GLY A 525 REMARK 465 LYS B 514 REMARK 465 LYS B 515 REMARK 465 ILE B 516 REMARK 465 LYS B 517 REMARK 465 GLY B 518 REMARK 465 ILE B 519 REMARK 465 GLN B 520 REMARK 465 GLN B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 ALA B 524 REMARK 465 GLY B 525 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 DT D 16 O HOH D 32 1.78 REMARK 500 OP2 DA C 5 O HOH C 31 1.98 REMARK 500 O GLU A 446 O HOH A 105 2.11 REMARK 500 N6 DA C 5 O4 DT D 16 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N3 DC C 1 N7 DG C 19 2455 1.98 REMARK 500 NH1 ARG B 488 NE ARG B 498 4555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 2 P DC C 2 OP2 0.122 REMARK 500 DC C 2 P DC C 2 O5' -0.085 REMARK 500 DC C 2 O4' DC C 2 C1' 0.070 REMARK 500 DA C 5 P DA C 5 O5' 0.120 REMARK 500 DA C 6 P DA C 6 O5' 0.088 REMARK 500 DA C 6 O3' DC C 7 P 0.115 REMARK 500 DA C 8 P DA C 8 O5' 0.098 REMARK 500 DA C 8 O3' DT C 9 P 0.087 REMARK 500 DT C 9 P DT C 9 OP2 0.108 REMARK 500 DT C 9 C4 DT C 9 O4 0.059 REMARK 500 DC C 10 O3' DG C 11 P 0.072 REMARK 500 DG C 11 N7 DG C 11 C8 0.047 REMARK 500 DC C 17 O3' DT C 18 P 0.122 REMARK 500 DG C 19 P DG C 19 O5' -0.064 REMARK 500 DC D 1 O4' DC D 1 C4' -0.079 REMARK 500 DC D 1 O3' DC D 2 P 0.074 REMARK 500 DC D 2 O3' DA D 3 P 0.125 REMARK 500 DA D 3 O4' DA D 3 C4' -0.063 REMARK 500 DG D 4 O3' DA D 5 P 0.077 REMARK 500 DC D 7 P DC D 7 O5' 0.063 REMARK 500 DA D 8 O3' DT D 9 P -0.086 REMARK 500 DT D 9 P DT D 9 O5' 0.075 REMARK 500 DT D 9 C4 DT D 9 O4 0.059 REMARK 500 DC D 10 O3' DG D 11 P 0.105 REMARK 500 DG D 11 P DG D 11 O5' 0.074 REMARK 500 DA D 12 P DA D 12 O5' 0.067 REMARK 500 DG D 14 O3' DT D 15 P -0.093 REMARK 500 DC D 17 P DC D 17 OP1 0.118 REMARK 500 DC D 17 O4' DC D 17 C1' 0.096 REMARK 500 DC D 17 O3' DT D 18 P 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O5' - C5' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC C 1 O4' - C4' - C3' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC C 1 C4' - C3' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DC C 1 C3' - O3' - P ANGL. DEV. = 22.8 DEGREES REMARK 500 DC C 2 O5' - P - OP1 ANGL. DEV. = 17.5 DEGREES REMARK 500 DC C 2 O5' - C5' - C4' ANGL. DEV. = -15.2 DEGREES REMARK 500 DC C 2 O4' - C4' - C3' ANGL. DEV. = -7.9 DEGREES REMARK 500 DC C 2 C1' - O4' - C4' ANGL. DEV. = -10.5 DEGREES REMARK 500 DC C 2 C4 - C5 - C6 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC C 2 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 3 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA C 3 P - O5' - C5' ANGL. DEV. = -16.5 DEGREES REMARK 500 DA C 3 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA C 3 C1' - O4' - C4' ANGL. DEV. = 5.7 DEGREES REMARK 500 DA C 3 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 3 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA C 3 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 DA C 3 C3' - O3' - P ANGL. DEV. = -9.6 DEGREES REMARK 500 DG C 4 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 DG C 4 N3 - C2 - N2 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG C 4 N1 - C6 - O6 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA C 5 P - O5' - C5' ANGL. DEV. = -15.7 DEGREES REMARK 500 DA C 5 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA C 5 C4' - C3' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 DA C 5 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 5 N1 - C2 - N3 ANGL. DEV. = -3.9 DEGREES REMARK 500 DA C 5 C3' - O3' - P ANGL. DEV. = 17.4 DEGREES REMARK 500 DA C 6 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA C 6 P - O5' - C5' ANGL. DEV. = -15.6 DEGREES REMARK 500 DA C 6 O4' - C4' - C3' ANGL. DEV. = -8.1 DEGREES REMARK 500 DA C 6 C4' - C3' - C2' ANGL. DEV. = -9.6 DEGREES REMARK 500 DA C 6 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 10.0 DEGREES REMARK 500 DA C 6 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 DC C 7 O5' - C5' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 8 P - O5' - C5' ANGL. DEV. = -15.5 DEGREES REMARK 500 DA C 8 O4' - C1' - C2' ANGL. DEV. = -7.9 DEGREES REMARK 500 DA C 8 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 8 C6 - N1 - C2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA C 8 C5 - C6 - N1 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT C 9 O5' - C5' - C4' ANGL. DEV. = -11.2 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 11.3 DEGREES REMARK 500 DT C 9 C6 - N1 - C2 ANGL. DEV. = -3.0 DEGREES REMARK 500 DT C 9 N1 - C2 - N3 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT C 9 C2 - N3 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT C 9 C3' - O3' - P ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 292 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 435 138.84 -172.55 REMARK 500 ARG A 438 -38.63 143.42 REMARK 500 CYS A 443 6.98 -152.32 REMARK 500 TYR A 452 29.84 41.36 REMARK 500 ASN A 480 38.24 81.26 REMARK 500 ASP A 481 42.03 -156.30 REMARK 500 TYR A 497 -76.23 -41.40 REMARK 500 ARG A 498 -32.31 -36.82 REMARK 500 THR A 512 123.53 88.09 REMARK 500 SER B 444 -9.59 76.52 REMARK 500 CYS B 457 -177.00 -69.48 REMARK 500 HIS B 472 36.96 -87.98 REMARK 500 ASP B 481 63.67 -154.04 REMARK 500 ASP B 485 164.51 167.34 REMARK 500 LEU B 501 -78.06 -55.40 REMARK 500 GLN B 502 -34.12 -37.95 REMARK 500 LYS B 511 -156.19 -151.14 REMARK 500 THR B 512 177.04 -49.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC C 2 0.06 SIDE CHAIN REMARK 500 DG C 19 0.07 SIDE CHAIN REMARK 500 DA D 8 0.06 SIDE CHAIN REMARK 500 DA D 12 0.07 SIDE CHAIN REMARK 500 DC D 17 0.08 SIDE CHAIN REMARK 500 DG D 19 0.09 SIDE CHAIN REMARK 500 ARG A 488 0.14 SIDE CHAIN REMARK 500 ARG A 496 0.08 SIDE CHAIN REMARK 500 ARG A 498 0.17 SIDE CHAIN REMARK 500 TYR B 452 0.08 SIDE CHAIN REMARK 500 ARG B 466 0.08 SIDE CHAIN REMARK 500 TYR B 497 0.11 SIDE CHAIN REMARK 500 ARG B 498 0.15 SIDE CHAIN REMARK 500 GLN B 502 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 437 10.80 REMARK 500 CYS A 450 -10.78 REMARK 500 ARG A 466 -11.67 REMARK 500 CYS A 482 10.63 REMARK 500 ARG A 496 -11.89 REMARK 500 LEU B 441 12.92 REMARK 500 HIS B 451 16.95 REMARK 500 PHE B 463 16.05 REMARK 500 VAL B 468 12.94 REMARK 500 GLN B 471 -11.12 REMARK 500 ASP B 485 16.55 REMARK 500 ASN B 491 13.88 REMARK 500 LEU B 501 -20.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 526 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 109.3 REMARK 620 3 CYS A 457 SG 112.0 105.3 REMARK 620 4 CYS A 460 SG 111.5 109.9 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 527 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 CYS A 482 SG 115.0 REMARK 620 3 CYS A 492 SG 111.9 111.1 REMARK 620 4 CYS A 495 SG 109.7 106.0 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 526 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 440 SG REMARK 620 2 CYS B 443 SG 106.0 REMARK 620 3 CYS B 457 SG 107.8 106.7 REMARK 620 4 CYS B 460 SG 109.8 117.8 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 527 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 476 SG REMARK 620 2 CYS B 482 SG 112.1 REMARK 620 3 CYS B 492 SG 110.7 114.0 REMARK 620 4 CYS B 495 SG 107.3 106.3 105.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 527 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GLU RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID REMARK 900 RECEPTOR WITH DNA REMARK 900 RELATED ID: 1R4R RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID REMARK 900 RECEPTOR WITH DNA DBREF 1R4O A 440 525 UNP P06536 GCR_RAT 440 525 DBREF 1R4O B 440 525 UNP P06536 GCR_RAT 440 525 DBREF 1R4O C 1 19 PDB 1R4O 1R4O 1 19 DBREF 1R4O D 1 19 PDB 1R4O 1R4O 1 19 SEQADV 1R4O MET A 434 UNP P06536 CLONING ARTIFACT SEQADV 1R4O LYS A 435 UNP P06536 CLONING ARTIFACT SEQADV 1R4O PRO A 436 UNP P06536 CLONING ARTIFACT SEQADV 1R4O ALA A 437 UNP P06536 CLONING ARTIFACT SEQADV 1R4O ARG A 438 UNP P06536 CLONING ARTIFACT SEQADV 1R4O PRO A 439 UNP P06536 CLONING ARTIFACT SEQADV 1R4O MET B 434 UNP P06536 CLONING ARTIFACT SEQADV 1R4O LYS B 435 UNP P06536 CLONING ARTIFACT SEQADV 1R4O PRO B 436 UNP P06536 CLONING ARTIFACT SEQADV 1R4O ALA B 437 UNP P06536 CLONING ARTIFACT SEQADV 1R4O ARG B 438 UNP P06536 CLONING ARTIFACT SEQADV 1R4O PRO B 439 UNP P06536 CLONING ARTIFACT SEQRES 1 C 19 DC DC DA DG DA DA DC DA DT DC DG DA DT SEQRES 2 C 19 DG DT DT DC DT DG SEQRES 1 D 19 DC DC DA DG DA DA DC DA DT DC DG DA DT SEQRES 2 D 19 DG DT DT DC DT DG SEQRES 1 A 92 MET LYS PRO ALA ARG PRO CYS LEU VAL CYS SER ASP GLU SEQRES 2 A 92 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER SEQRES 3 A 92 CYS LYS VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 A 92 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 A 92 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG SEQRES 6 A 92 LYS CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS SEQRES 7 A 92 THR LYS LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA SEQRES 8 A 92 GLY SEQRES 1 B 92 MET LYS PRO ALA ARG PRO CYS LEU VAL CYS SER ASP GLU SEQRES 2 B 92 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER SEQRES 3 B 92 CYS LYS VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 B 92 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 B 92 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG SEQRES 6 B 92 LYS CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS SEQRES 7 B 92 THR LYS LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA SEQRES 8 B 92 GLY HET ZN A 526 1 HET ZN A 527 1 HET ZN B 526 1 HET ZN B 527 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *109(H2 O) HELIX 1 1 CYS A 457 GLY A 470 1 14 HELIX 2 2 ILE A 487 ASN A 491 5 5 HELIX 3 3 CYS A 492 ALA A 503 1 12 HELIX 4 4 CYS B 457 GLY B 470 1 14 HELIX 5 5 CYS B 492 GLN B 502 1 11 SHEET 1 A 2 GLY A 449 HIS A 451 0 SHEET 2 A 2 VAL A 454 THR A 456 -1 O VAL A 454 N HIS A 451 SHEET 1 B 2 CYS B 450 HIS B 451 0 SHEET 2 B 2 VAL B 454 LEU B 455 -1 O VAL B 454 N HIS B 451 LINK SG CYS A 440 ZN ZN A 526 1555 1555 2.27 LINK SG CYS A 443 ZN ZN A 526 1555 1555 2.40 LINK SG CYS A 457 ZN ZN A 526 1555 1555 2.32 LINK SG CYS A 460 ZN ZN A 526 1555 1555 2.28 LINK SG CYS A 476 ZN ZN A 527 1555 1555 2.23 LINK SG CYS A 482 ZN ZN A 527 1555 1555 2.27 LINK SG CYS A 492 ZN ZN A 527 1555 1555 2.33 LINK SG CYS A 495 ZN ZN A 527 1555 1555 2.45 LINK SG CYS B 440 ZN ZN B 526 1555 1555 2.35 LINK SG CYS B 443 ZN ZN B 526 1555 1555 2.32 LINK SG CYS B 457 ZN ZN B 526 1555 1555 2.36 LINK SG CYS B 460 ZN ZN B 526 1555 1555 2.21 LINK SG CYS B 476 ZN ZN B 527 1555 1555 2.29 LINK SG CYS B 482 ZN ZN B 527 1555 1555 2.27 LINK SG CYS B 492 ZN ZN B 527 1555 1555 2.30 LINK SG CYS B 495 ZN ZN B 527 1555 1555 2.41 SITE 1 AC1 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC2 4 CYS A 476 CYS A 482 CYS A 492 CYS A 495 SITE 1 AC3 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC4 4 CYS B 476 CYS B 482 CYS B 492 CYS B 495 CRYST1 38.500 97.500 120.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008299 0.00000