PDB Short entry for 1R5G HEADER HYDROLASE 10-OCT-03 1R5G TITLE CRYSTAL STRUCTURE OF METAP2 COMPLEXED WITH A311263 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 110-478; COMPND 5 SYNONYM: METAP 2, PEPTIDASE M 2, INITIATION FACTOR 2 COMPND 6 ASSOCIATED 67 KDA GLYCOPROTEIN, P67, P67EIF2; COMPND 7 EC: 3.4.11.18 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.SHEPPARD,J.WANG,M.KAWAI,N.Y.BAMAUNG,R.A.CRAIG, AUTHOR 2 S.A.ERICKSON,L.LYNCH,J.PATEL,F.YANG,X.B.SEARLE,P.LOU,C.PARK, AUTHOR 3 K.H.KIM,J.HENKIN,R.LESNIEWSKI REVDAT 2 24-FEB-09 1R5G 1 VERSN REVDAT 1 12-OCT-04 1R5G 0 JRNL AUTH G.S.SHEPPARD,J.WANG,M.KAWAI,N.Y.BAMAUNG,R.A.CRAIG, JRNL AUTH 2 S.A.ERICKSON,L.LYNCH,J.PATEL,F.YANG,X.B.SEARLE, JRNL AUTH 3 P.LOU,C.PARK,K.H.KIM,J.HENKIN,R.LESNIEWSKI JRNL TITL 3-AMINO-2-HYDROXYAMIDES AND RELATED COMPOUNDS AS JRNL TITL 2 INHIBITORS OF METHIONINE AMINOPEPTIDASE-2. JRNL REF BIOORG.MED.CHEM.LETT. V. 14 865 2004 JRNL REFN ISSN 0960-894X JRNL PMID 15012983 JRNL DOI 10.1016/J.BMCL.2003.12.031 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 544317.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.8 REMARK 3 NUMBER OF REFLECTIONS : 25704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1960 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 254 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.64000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.630 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.380 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 64.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : A31.PAR REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : A31.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R5G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-99 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.54650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.54650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.00450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.30600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.00450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.30600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.54650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.00450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.30600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.54650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.00450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.30600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 522 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 151 OG1 THR A 151 4555 1.85 REMARK 500 NH2 ARG A 296 NH2 ARG A 296 3555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 114 -80.36 -31.95 REMARK 500 PRO A 116 122.40 -37.91 REMARK 500 SER A 117 -15.64 -144.82 REMARK 500 THR A 151 62.28 -156.91 REMARK 500 GLU A 153 -50.92 -6.79 REMARK 500 CYS A 223 42.43 -147.61 REMARK 500 ASN A 226 -111.16 49.07 REMARK 500 PRO A 345 -123.32 -28.85 REMARK 500 ILE A 346 -14.05 155.15 REMARK 500 GLU A 351 -99.96 56.66 REMARK 500 ALA A 352 12.94 155.94 REMARK 500 MET A 378 171.44 75.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 688 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 819 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 882 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A 884 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 480 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 459 OE2 REMARK 620 2 ASP A 262 OD2 87.8 REMARK 620 3 ASP A 251 OD1 103.5 99.0 REMARK 620 4 ASP A 251 OD2 88.0 155.0 58.3 REMARK 620 5 AO1 A 501 O24 90.1 112.2 146.4 92.4 REMARK 620 6 AO1 A 501 N7 153.3 85.5 103.0 108.4 68.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 481 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 331 NE2 REMARK 620 2 GLU A 364 OE1 87.7 REMARK 620 3 AO1 A 501 O13 79.6 92.9 REMARK 620 4 GLU A 459 OE1 119.0 86.7 161.3 REMARK 620 5 AO1 A 501 O24 147.4 85.8 68.9 92.5 REMARK 620 6 ASP A 262 OD1 88.7 161.7 104.1 79.4 106.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 480 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 481 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AO1 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R58 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 1R5H RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT LIGAND DBREF 1R5G A 110 478 UNP P50579 AMPM2_HUMAN 110 478 SEQADV 1R5G ILE A 347 UNP P50579 VAL 347 CONFLICT SEQRES 1 A 369 LYS VAL GLN THR ASP PRO PRO SER VAL PRO ILE CYS ASP SEQRES 2 A 369 LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY GLN GLU CYS SEQRES 3 A 369 GLU TYR PRO PRO THR GLN ASP GLY ARG THR ALA ALA TRP SEQRES 4 A 369 ARG THR THR SER GLU GLU LYS LYS ALA LEU ASP GLN ALA SEQRES 5 A 369 SER GLU GLU ILE TRP ASN ASP PHE ARG GLU ALA ALA GLU SEQRES 6 A 369 ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SER TRP ILE SEQRES 7 A 369 LYS PRO GLY MET THR MET ILE GLU ILE CYS GLU LYS LEU SEQRES 8 A 369 GLU ASP CYS SER ARG LYS LEU ILE LYS GLU ASN GLY LEU SEQRES 9 A 369 ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SER LEU ASN SEQRES 10 A 369 ASN CYS ALA ALA HIS TYR THR PRO ASN ALA GLY ASP THR SEQRES 11 A 369 THR VAL LEU GLN TYR ASP ASP ILE CYS LYS ILE ASP PHE SEQRES 12 A 369 GLY THR HIS ILE SER GLY ARG ILE ILE ASP CYS ALA PHE SEQRES 13 A 369 THR VAL THR PHE ASN PRO LYS TYR ASP THR LEU LEU LYS SEQRES 14 A 369 ALA VAL LYS ASP ALA THR ASN THR GLY ILE LYS CYS ALA SEQRES 15 A 369 GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY GLU ALA ILE SEQRES 16 A 369 GLN GLU VAL MET GLU SER TYR GLU VAL GLU ILE ASP GLY SEQRES 17 A 369 LYS THR TYR GLN VAL LYS PRO ILE ARG ASN LEU ASN GLY SEQRES 18 A 369 HIS SER ILE GLY GLN TYR ARG ILE HIS ALA GLY LYS THR SEQRES 19 A 369 VAL PRO ILE ILE LYS GLY GLY GLU ALA THR ARG MET GLU SEQRES 20 A 369 GLU GLY GLU VAL TYR ALA ILE GLU THR PHE GLY SER THR SEQRES 21 A 369 GLY LYS GLY VAL VAL HIS ASP ASP MET GLU CYS SER HIS SEQRES 22 A 369 TYR MET LYS ASN PHE ASP VAL GLY HIS VAL PRO ILE ARG SEQRES 23 A 369 LEU PRO ARG THR LYS HIS LEU LEU ASN VAL ILE ASN GLU SEQRES 24 A 369 ASN PHE GLY THR LEU ALA PHE CYS ARG ARG TRP LEU ASP SEQRES 25 A 369 ARG LEU GLY GLU SER LYS TYR LEU MET ALA LEU LYS ASN SEQRES 26 A 369 LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR PRO PRO LEU SEQRES 27 A 369 CYS ASP ILE LYS GLY SER TYR THR ALA GLN PHE GLU HIS SEQRES 28 A 369 THR ILE LEU LEU ARG PRO THR CYS LYS GLU VAL VAL SER SEQRES 29 A 369 ARG GLY ASP ASP TYR HET MN A 480 1 HET MN A 481 1 HET AO1 A 501 24 HETNAM MN MANGANESE (II) ION HETNAM AO1 (2S,3R)-3-AMINO-2-HYDROXY-5-(ETHYLSULFANYL)PENTANOYL- HETNAM 2 AO1 ((S)-(-)-(1-NAPHTHYL)ETHYL)AMIDE FORMUL 2 MN 2(MN 2+) FORMUL 4 AO1 C19 H26 N2 O2 S FORMUL 5 HOH *436(H2 O) HELIX 1 1 PRO A 119 TYR A 124 1 6 HELIX 2 2 ALA A 146 THR A 151 5 6 HELIX 3 3 SER A 152 SER A 162 1 11 HELIX 4 4 SER A 162 ILE A 187 1 26 HELIX 5 5 THR A 192 ILE A 208 1 17 HELIX 6 6 ASN A 211 LEU A 213 5 3 HELIX 7 7 ASN A 270 LYS A 272 5 3 HELIX 8 8 TYR A 273 ALA A 291 1 19 HELIX 9 9 ARG A 296 GLU A 309 1 14 HELIX 10 10 LEU A 396 PHE A 410 1 15 HELIX 11 11 ARG A 417 ARG A 422 1 6 HELIX 12 12 TYR A 428 LEU A 438 1 11 SHEET 1 A 5 GLN A 133 CYS A 135 0 SHEET 2 A 5 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 A 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 A 5 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 A 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 B 6 GLN A 133 CYS A 135 0 SHEET 2 B 6 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 B 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 B 6 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 B 6 GLY A 330 SER A 332 -1 N HIS A 331 O ALA A 362 SHEET 6 B 6 THR A 343 VAL A 344 -1 O VAL A 344 N GLY A 330 SHEET 1 C 3 ALA A 215 LEU A 225 0 SHEET 2 C 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 C 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 D 3 CYS A 228 ALA A 230 0 SHEET 2 D 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 230 SHEET 3 D 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 E 2 GLU A 312 ILE A 315 0 SHEET 2 E 2 LYS A 318 GLN A 321 -1 O LYS A 318 N ILE A 315 SHEET 1 F 3 PHE A 415 CYS A 416 0 SHEET 2 F 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 F 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.05 LINK MN MN A 480 OE2 GLU A 459 1555 1555 2.15 LINK MN MN A 480 OD2 ASP A 262 1555 1555 2.12 LINK MN MN A 480 OD1 ASP A 251 1555 1555 2.24 LINK MN MN A 480 OD2 ASP A 251 1555 1555 2.27 LINK MN MN A 480 O24 AO1 A 501 1555 1555 2.30 LINK MN MN A 480 N7 AO1 A 501 1555 1555 2.62 LINK MN MN A 481 NE2 HIS A 331 1555 1555 2.41 LINK MN MN A 481 OE1 GLU A 364 1555 1555 2.18 LINK MN MN A 481 O13 AO1 A 501 1555 1555 2.27 LINK MN MN A 481 OE1 GLU A 459 1555 1555 2.19 LINK MN MN A 481 O24 AO1 A 501 1555 1555 2.22 LINK MN MN A 481 OD1 ASP A 262 1555 1555 2.07 SITE 1 AC1 6 ASP A 251 ASP A 262 GLU A 459 MN A 481 SITE 2 AC1 6 AO1 A 501 HOH A 768 SITE 1 AC2 6 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC2 6 MN A 480 AO1 A 501 SITE 1 AC3 16 PHE A 219 HIS A 231 ASP A 251 ASP A 262 SITE 2 AC3 16 LEU A 328 ASN A 329 HIS A 331 HIS A 339 SITE 3 AC3 16 GLU A 364 TYR A 444 GLU A 459 MN A 480 SITE 4 AC3 16 MN A 481 HOH A 768 HOH A 824 HOH A 844 CRYST1 90.009 98.612 101.093 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009892 0.00000