PDB Short entry for 1R5O HEADER TRANSLATION 11-OCT-03 1R5O TITLE CRYSTAL STRUCTURE ANALYSIS OF SUP35 COMPLEXED WITH GMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 196-662; COMPND 6 SYNONYM: ERF2, TRANSLATION RELEASE FACTOR 3, ERF3, ERF-3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: SUP35; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR C.KONG,H.SONG REVDAT 3 25-OCT-23 1R5O 1 REMARK REVDAT 2 24-FEB-09 1R5O 1 VERSN REVDAT 1 25-MAY-04 1R5O 0 JRNL AUTH C.KONG,K.ITO,M.A.WALSH,M.WADA,Y.LIU,S.KUMAR,D.BARFORD, JRNL AUTH 2 Y.NAKAMURA,H.SONG JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF THE EUKARYOTIC JRNL TITL 2 CLASS II RELEASE FACTOR ERF3 FROM S. POMBE JRNL REF MOL.CELL V. 14 233 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15099522 JRNL DOI 10.1016/S1097-2765(04)00206-0 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 9417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -2.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.621 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.423 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.877 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.813 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3307 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3017 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4467 ; 1.377 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7036 ; 0.831 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 5.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3613 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 945 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3969 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1980 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2029 ; 1.080 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3286 ; 2.001 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 1.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1181 ; 2.554 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11894 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : 0.14000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : 0.14000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1R5B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, ETHYLENE GLYCOL, PEG 8000, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.03800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.26200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.26200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.05700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.26200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.26200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.01900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.26200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.26200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.05700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.26200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.26200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.01900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.03800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 196 REMARK 465 ALA A 197 REMARK 465 PRO A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 LEU A 202 REMARK 465 LYS A 203 REMARK 465 LYS A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 GLU A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 GLU A 210 REMARK 465 PRO A 211 REMARK 465 ALA A 212 REMARK 465 THR A 213 REMARK 465 VAL A 214 REMARK 465 ALA A 280 REMARK 465 GLY A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 SER A 284 REMARK 465 TRP A 285 REMARK 465 TYR A 286 REMARK 465 LEU A 287 REMARK 465 SER A 288 REMARK 465 TRP A 289 REMARK 465 ALA A 290 REMARK 465 LEU A 291 REMARK 465 ASP A 292 REMARK 465 SER A 293 REMARK 465 THR A 294 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 GLU A 297 REMARK 465 ARG A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 LYS A 302 REMARK 465 THR A 303 REMARK 465 VAL A 304 REMARK 465 GLU A 305 REMARK 465 VAL A 306 REMARK 465 GLY A 307 REMARK 465 GLY A 325 REMARK 465 HIS A 326 REMARK 465 LYS A 327 REMARK 465 GLY A 328 REMARK 465 TYR A 329 REMARK 465 VAL A 330 REMARK 465 THR A 331 REMARK 465 ASN A 332 REMARK 465 MET A 333 REMARK 465 ILE A 334 REMARK 465 ASN A 335 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 538 O HOH A 25 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 220 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 436 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 537 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 600 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 662 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 216 -152.72 -150.50 REMARK 500 THR A 219 88.23 54.04 REMARK 500 ASP A 220 -111.63 -83.49 REMARK 500 LEU A 221 38.00 -97.86 REMARK 500 VAL A 225 79.90 -55.22 REMARK 500 ASP A 232 -65.12 166.77 REMARK 500 VAL A 247 42.09 -90.68 REMARK 500 ASP A 248 5.64 164.59 REMARK 500 LYS A 278 110.46 -177.22 REMARK 500 ASP A 322 -150.50 -103.99 REMARK 500 ALA A 323 -60.83 -140.18 REMARK 500 ALA A 337 28.64 -70.17 REMARK 500 GLU A 359 -108.15 -93.46 REMARK 500 GLU A 388 139.31 -39.80 REMARK 500 VAL A 391 -50.66 -129.07 REMARK 500 GLN A 392 18.12 56.88 REMARK 500 THR A 419 31.52 -144.33 REMARK 500 ASN A 433 4.12 90.47 REMARK 500 SER A 450 177.51 -59.19 REMARK 500 SER A 457 -2.44 -147.83 REMARK 500 HIS A 460 86.32 -67.01 REMARK 500 ASP A 479 -114.77 -164.06 REMARK 500 LYS A 494 -146.90 -123.35 REMARK 500 ASN A 505 38.88 34.64 REMARK 500 LEU A 508 123.19 -170.57 REMARK 500 ASP A 515 -152.67 -98.92 REMARK 500 ALA A 517 38.27 -148.76 REMARK 500 ASP A 518 59.61 15.69 REMARK 500 ASP A 537 86.13 -62.80 REMARK 500 ASN A 552 78.36 -117.33 REMARK 500 ALA A 556 119.33 -160.48 REMARK 500 ALA A 562 141.25 -173.25 REMARK 500 LEU A 567 -93.16 -120.42 REMARK 500 GLU A 568 -136.00 -60.09 REMARK 500 PRO A 570 -80.99 -77.66 REMARK 500 SER A 571 -5.56 116.08 REMARK 500 LEU A 573 -143.69 -87.85 REMARK 500 THR A 574 -140.11 -100.85 REMARK 500 THR A 575 67.14 -19.65 REMARK 500 HIS A 584 -88.49 -124.56 REMARK 500 ALA A 586 -77.76 -69.65 REMARK 500 VAL A 587 75.06 73.19 REMARK 500 ALA A 593 -166.42 -119.21 REMARK 500 LYS A 594 89.19 -24.07 REMARK 500 LEU A 595 -173.22 -61.43 REMARK 500 LEU A 596 -53.62 -155.62 REMARK 500 LYS A 601 -72.29 58.66 REMARK 500 THR A 602 36.53 -81.78 REMARK 500 ARG A 604 -104.33 -70.19 REMARK 500 LYS A 605 -125.28 166.17 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1986 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R5B RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND REMARK 900 RELATED ID: 1R5N RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GDP DBREF 1R5O A 196 662 UNP O74718 ERF2_SCHPO 196 662 SEQRES 1 A 467 SER ALA PRO ALA ALA ALA LEU LYS LYS ALA ALA GLU ALA SEQRES 2 A 467 ALA GLU PRO ALA THR VAL THR GLU ASP ALA THR ASP LEU SEQRES 3 A 467 GLN ASN GLU VAL ASP GLN GLU LEU LEU LYS ASP MET TYR SEQRES 4 A 467 GLY LYS GLU HIS VAL ASN ILE VAL PHE ILE GLY HIS VAL SEQRES 5 A 467 ASP ALA GLY LYS SER THR LEU GLY GLY ASN ILE LEU PHE SEQRES 6 A 467 LEU THR GLY MET VAL ASP LYS ARG THR MET GLU LYS ILE SEQRES 7 A 467 GLU ARG GLU ALA LYS GLU ALA GLY LYS GLU SER TRP TYR SEQRES 8 A 467 LEU SER TRP ALA LEU ASP SER THR SER GLU GLU ARG GLU SEQRES 9 A 467 LYS GLY LYS THR VAL GLU VAL GLY ARG ALA TYR PHE GLU SEQRES 10 A 467 THR GLU HIS ARG ARG PHE SER LEU LEU ASP ALA PRO GLY SEQRES 11 A 467 HIS LYS GLY TYR VAL THR ASN MET ILE ASN GLY ALA SER SEQRES 12 A 467 GLN ALA ASP ILE GLY VAL LEU VAL ILE SER ALA ARG ARG SEQRES 13 A 467 GLY GLU PHE GLU ALA GLY PHE GLU ARG GLY GLY GLN THR SEQRES 14 A 467 ARG GLU HIS ALA VAL LEU ALA ARG THR GLN GLY ILE ASN SEQRES 15 A 467 HIS LEU VAL VAL VAL ILE ASN LYS MET ASP GLU PRO SER SEQRES 16 A 467 VAL GLN TRP SER GLU GLU ARG TYR LYS GLU CYS VAL ASP SEQRES 17 A 467 LYS LEU SER MET PHE LEU ARG ARG VAL ALA GLY TYR ASN SEQRES 18 A 467 SER LYS THR ASP VAL LYS TYR MET PRO VAL SER ALA TYR SEQRES 19 A 467 THR GLY GLN ASN VAL LYS ASP ARG VAL ASP SER SER VAL SEQRES 20 A 467 CYS PRO TRP TYR GLN GLY PRO SER LEU LEU GLU TYR LEU SEQRES 21 A 467 ASP SER MET THR HIS LEU GLU ARG LYS VAL ASN ALA PRO SEQRES 22 A 467 PHE ILE MET PRO ILE ALA SER LYS TYR LYS ASP LEU GLY SEQRES 23 A 467 THR ILE LEU GLU GLY LYS ILE GLU ALA GLY SER ILE LYS SEQRES 24 A 467 LYS ASN SER ASN VAL LEU VAL MET PRO ILE ASN GLN THR SEQRES 25 A 467 LEU GLU VAL THR ALA ILE TYR ASP GLU ALA ASP GLU GLU SEQRES 26 A 467 ILE SER SER SER ILE CYS GLY ASP GLN VAL ARG LEU ARG SEQRES 27 A 467 VAL ARG GLY ASP ASP SER ASP VAL GLN THR GLY TYR VAL SEQRES 28 A 467 LEU THR SER THR LYS ASN PRO VAL HIS ALA THR THR ARG SEQRES 29 A 467 PHE ILE ALA GLN ILE ALA ILE LEU GLU LEU PRO SER ILE SEQRES 30 A 467 LEU THR THR GLY TYR SER CYS VAL MET HIS ILE HIS THR SEQRES 31 A 467 ALA VAL GLU GLU VAL SER PHE ALA LYS LEU LEU HIS LYS SEQRES 32 A 467 LEU ASP LYS THR ASN ARG LYS SER LYS LYS PRO PRO MET SEQRES 33 A 467 PHE ALA THR LYS GLY MET LYS ILE ILE ALA GLU LEU GLU SEQRES 34 A 467 THR GLN THR PRO VAL CYS MET GLU ARG PHE GLU ASP TYR SEQRES 35 A 467 GLN TYR MET GLY ARG PHE THR LEU ARG ASP GLN GLY THR SEQRES 36 A 467 THR VAL ALA VAL GLY LYS VAL VAL LYS ILE LEU ASP HET GNP A1986 32 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 HOH *56(H2 O) HELIX 1 1 GLY A 250 THR A 262 1 13 HELIX 2 2 ASP A 266 GLU A 276 1 11 HELIX 3 3 GLY A 352 PHE A 358 1 7 HELIX 4 4 GLN A 363 GLN A 374 1 12 HELIX 5 5 SER A 394 GLY A 414 1 21 HELIX 6 6 SER A 450 ASP A 456 1 7 HELIX 7 7 LEU A 461 ALA A 467 1 7 HELIX 8 8 ARG A 633 GLN A 638 1 6 SHEET 1 A 6 TYR A 310 THR A 313 0 SHEET 2 A 6 ARG A 316 LEU A 321 -1 O PHE A 318 N PHE A 311 SHEET 3 A 6 GLU A 237 GLY A 245 1 N GLU A 237 O ARG A 317 SHEET 4 A 6 ILE A 342 SER A 348 1 O VAL A 344 N VAL A 242 SHEET 5 A 6 LEU A 379 ASN A 384 1 O ASN A 384 N ILE A 347 SHEET 6 A 6 VAL A 421 PRO A 425 1 O LYS A 422 N VAL A 381 SHEET 1 B 6 ILE A 470 PRO A 472 0 SHEET 2 B 6 VAL A 546 THR A 548 -1 O LEU A 547 N MET A 471 SHEET 3 B 6 ASN A 498 MET A 502 -1 N LEU A 500 O THR A 548 SHEET 4 B 6 GLN A 506 TYR A 514 -1 O LEU A 508 N VAL A 499 SHEET 5 B 6 GLN A 529 ARG A 535 -1 O ARG A 535 N GLU A 509 SHEET 6 B 6 THR A 482 LYS A 487 -1 N LEU A 484 O LEU A 532 SHEET 1 C 5 ILE A 470 PRO A 472 0 SHEET 2 C 5 VAL A 546 THR A 548 -1 O LEU A 547 N MET A 471 SHEET 3 C 5 ASN A 498 MET A 502 -1 N LEU A 500 O THR A 548 SHEET 4 C 5 GLN A 506 TYR A 514 -1 O LEU A 508 N VAL A 499 SHEET 5 C 5 GLU A 520 ILE A 521 -1 O ILE A 521 N ILE A 513 SHEET 1 D 2 SER A 492 ILE A 493 0 SHEET 2 D 2 SER A 524 ILE A 525 -1 O SER A 524 N ILE A 493 SHEET 1 E 7 ALA A 556 ILE A 566 0 SHEET 2 E 7 LYS A 618 CYS A 630 -1 O ILE A 619 N ILE A 564 SHEET 3 E 7 GLU A 588 PHE A 592 -1 N SER A 591 O GLU A 624 SHEET 4 E 7 SER A 578 HIS A 582 -1 N MET A 581 O GLU A 588 SHEET 5 E 7 ARG A 642 ASP A 647 -1 O ARG A 646 N VAL A 580 SHEET 6 E 7 THR A 650 ILE A 660 -1 O GLY A 655 N PHE A 643 SHEET 7 E 7 ALA A 556 ILE A 566 -1 N ILE A 561 O LYS A 659 CISPEP 1 MET A 502 PRO A 503 0 5.46 SITE 1 AC1 13 HIS A 246 VAL A 247 ASP A 248 ALA A 249 SITE 2 AC1 13 GLY A 250 LYS A 251 SER A 252 THR A 253 SITE 3 AC1 13 ALA A 277 LYS A 385 GLU A 388 ALA A 428 SITE 4 AC1 13 TYR A 429 CRYST1 82.524 82.524 168.076 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005950 0.00000