PDB Short entry for 1R6P HEADER METAL BINDING PROTEIN 15-OCT-03 1R6P TITLE NMR STRUCTURE OF THE N-TERMINAL DOMAIN OF TROUT CARDIAC TROPONIN C AT TITLE 2 7 C COMPND MOL_ID: 1; COMPND 2 MOLECULE: TROPONIN C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-89); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ONCORHYNCHUS MYKISS; SOURCE 3 ORGANISM_COMMON: RAINBOW TROUT; SOURCE 4 ORGANISM_TAXID: 8022; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS EF-HAND, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR T.M.BLUMENSCHEIN,T.E.GILLIS,G.F.TIBBITS,B.D.SYKES REVDAT 3 02-MAR-22 1R6P 1 REMARK LINK REVDAT 2 24-FEB-09 1R6P 1 VERSN REVDAT 1 08-JUN-04 1R6P 0 JRNL AUTH T.M.BLUMENSCHEIN,T.E.GILLIS,G.F.TIBBITS,B.D.SYKES JRNL TITL EFFECT OF TEMPERATURE ON THE STRUCTURE OF TROUT TROPONIN C JRNL REF BIOCHEMISTRY V. 43 4955 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15109253 JRNL DOI 10.1021/BI035504Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.E.GILLIS,T.M.A.BLUMENSCHEIN,B.D.SYKES,G.F.TIBBITS REMARK 1 TITL THE EFFECT OF TEMPERATURE AND THE F27W MUTATION ON THE CA2+ REMARK 1 TITL 2 ACTIVATED STRUCTURAL TRANSITION OF TROUT CARDIAC TROPONIN C REMARK 1 REF BIOCHEMISTRY V. 42 6418 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI0340494 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE APRIL 2001, X-PLOR 3.851 REMARK 3 AUTHORS : DELAGLIO, F., GRZESIEK, S., VUISTER,G.W., ZHU, G., REMARK 3 PFEIFER, J. AND BAX, A. (NMRPIPE), BRUNGER, A.T. REMARK 3 (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R6P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020503. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.34 MM N-DOMAIN OF TROUT REMARK 210 CARDIAC TROPONIN C U-15N; 10 MM REMARK 210 IMIDAZOL; 100 MM KCL; 0.03% NAN3; REMARK 210 20 MM DTT; 0.2 MM DSS; ~4 MM REMARK 210 CACL2; 1.34 MM N-DOMAIN OF TROUT REMARK 210 CARDIAC TROPONIN C U-15N; 10 MM REMARK 210 IMIDAZOL; 100 MM KCL; 0.03% NAN3; REMARK 210 20 MM DTT; 0.2 MM DSS; ~4 MM REMARK 210 CACL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; DIPSI-HSQC; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; HNHB; 2D REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRVIEW 5.0.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 87 -38.86 -175.53 REMARK 500 2 ASP A 33 -47.59 -146.89 REMARK 500 2 LYS A 86 155.94 72.76 REMARK 500 3 ASN A 2 44.75 -159.42 REMARK 500 3 ASP A 33 -47.57 -155.88 REMARK 500 3 PRO A 52 -159.80 -82.93 REMARK 500 3 LYS A 86 158.74 70.85 REMARK 500 3 ASP A 88 104.22 67.98 REMARK 500 4 ASN A 2 90.26 63.80 REMARK 500 4 ASN A 51 63.17 -155.82 REMARK 500 4 PRO A 52 -158.67 -84.88 REMARK 500 5 GLU A 32 43.54 -109.07 REMARK 500 5 ASP A 33 -48.15 -159.39 REMARK 500 5 ASN A 51 71.03 -155.13 REMARK 500 5 ASP A 87 35.43 -163.06 REMARK 500 5 ASP A 88 88.58 62.88 REMARK 500 6 ASN A 51 83.30 -150.01 REMARK 500 6 ASP A 87 40.55 -169.13 REMARK 500 6 ASP A 88 98.64 58.48 REMARK 500 7 ASP A 87 68.63 60.39 REMARK 500 8 ASN A 2 31.01 -143.54 REMARK 500 8 PRO A 52 -159.57 -84.44 REMARK 500 8 LYS A 86 162.49 66.68 REMARK 500 9 ASP A 65 102.47 -51.93 REMARK 500 9 ASP A 87 65.08 64.74 REMARK 500 10 ASN A 2 51.07 -140.37 REMARK 500 10 ASP A 33 -45.61 -131.85 REMARK 500 10 PRO A 52 -159.60 -84.53 REMARK 500 10 LYS A 86 138.58 74.64 REMARK 500 10 ASP A 88 62.75 -177.51 REMARK 500 11 ILE A 28 65.32 -109.68 REMARK 500 11 ASP A 33 -49.01 -145.39 REMARK 500 11 LYS A 86 121.34 72.31 REMARK 500 11 ASP A 88 -55.47 -172.23 REMARK 500 12 ASN A 51 72.03 -158.22 REMARK 500 12 PRO A 52 -159.16 -84.38 REMARK 500 12 LYS A 86 113.98 77.53 REMARK 500 12 ASP A 87 37.08 -99.24 REMARK 500 12 ASP A 88 55.19 -167.17 REMARK 500 13 GLU A 32 44.95 -107.25 REMARK 500 13 ASP A 33 -47.34 -159.46 REMARK 500 13 LYS A 86 133.65 75.69 REMARK 500 13 ASP A 88 -61.24 -156.22 REMARK 500 14 ASP A 33 -46.18 -140.10 REMARK 500 14 PRO A 52 -159.60 -84.44 REMARK 500 14 ASP A 88 -69.15 69.81 REMARK 500 15 ASN A 2 95.44 63.44 REMARK 500 15 ASP A 33 -51.27 -154.61 REMARK 500 15 LYS A 86 156.39 67.70 REMARK 500 15 ASP A 88 115.87 -173.27 REMARK 500 REMARK 500 THIS ENTRY HAS 135 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 90 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD1 REMARK 620 2 ASP A 65 OD2 38.4 REMARK 620 3 ASP A 67 OD2 130.3 91.9 REMARK 620 4 ASP A 67 OD1 121.5 99.3 47.9 REMARK 620 5 SER A 69 OG 117.5 105.4 67.5 110.8 REMARK 620 6 THR A 71 O 56.6 86.3 146.0 165.4 80.3 REMARK 620 7 GLU A 76 OE1 60.0 92.9 148.0 100.1 140.4 66.0 REMARK 620 8 GLU A 76 OE2 65.0 73.2 107.0 64.5 174.4 104.9 45.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 90 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R2U RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-DOMAIN OF TROUT CARDIAC TROPONIN C AT 30 C DBREF 1R6P A 1 89 UNP Q7ZZB9 Q7ZZB9_ONCMY 1 89 SEQRES 1 A 89 MET ASN ASP ILE TYR LYS ALA ALA VAL GLU GLN LEU THR SEQRES 2 A 89 ASP GLU GLN LYS ASN GLU PHE LYS ALA ALA PHE ASP ILE SEQRES 3 A 89 PHE ILE GLN ASP ALA GLU ASP GLY CYS ILE SER THR LYS SEQRES 4 A 89 GLU LEU GLY LYS VAL MET ARG MET LEU GLY GLN ASN PRO SEQRES 5 A 89 THR PRO GLU GLU LEU GLN GLU MET ILE ASP GLU VAL ASP SEQRES 6 A 89 GLU ASP GLY SER GLY THR VAL ASP PHE ASP GLU PHE LEU SEQRES 7 A 89 VAL MET MET VAL ARG CYS MET LYS ASP ASP SER HET CA A 90 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 ASN A 2 GLN A 11 1 10 HELIX 2 2 THR A 13 ILE A 28 1 16 HELIX 3 3 LEU A 41 GLY A 49 1 9 HELIX 4 4 THR A 53 ASP A 65 1 13 HELIX 5 5 PHE A 74 LYS A 86 1 13 SHEET 1 A 2 CYS A 35 SER A 37 0 SHEET 2 A 2 THR A 71 ASP A 73 -1 O VAL A 72 N ILE A 36 LINK OD1 ASP A 65 CA CA A 90 1555 1555 3.33 LINK OD2 ASP A 65 CA CA A 90 1555 1555 2.01 LINK OD2 ASP A 67 CA CA A 90 1555 1555 2.10 LINK OD1 ASP A 67 CA CA A 90 1555 1555 2.89 LINK OG SER A 69 CA CA A 90 1555 1555 2.86 LINK O THR A 71 CA CA A 90 1555 1555 2.80 LINK OE1 GLU A 76 CA CA A 90 1555 1555 2.75 LINK OE2 GLU A 76 CA CA A 90 1555 1555 2.86 SITE 1 AC1 5 ASP A 65 ASP A 67 SER A 69 THR A 71 SITE 2 AC1 5 GLU A 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000