PDB Short entry for 1R8E HEADER TRANSCRIPTION/DNA 23-OCT-03 1R8E TITLE CRYSTAL STRUCTURE OF BMRR BOUND TO DNA AT 2.4A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*CP*CP*CP*TP*CP*CP*CP*CP*TP*TP*AP*GP*GP*GP*GP*AP COMPND 3 *GP*GP*GP*TP*C)-3'; COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MULTIDRUG-EFFLUX TRANSPORTER REGULATOR; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 5 ORGANISM_TAXID: 1423; SOURCE 6 GENE: BMRR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PROTEIN-DNA COMPLEX, MERR-FAMILY TRANSCRIPTION ACTIVATOR, MULTIDRUG- KEYWDS 2 BINDING PROTEIN, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.J.NEWBERRY,R.G.BRENNAN REVDAT 4 23-AUG-23 1R8E 1 REMARK REVDAT 3 13-JUL-11 1R8E 1 VERSN REVDAT 2 24-FEB-09 1R8E 1 VERSN REVDAT 1 17-AUG-04 1R8E 0 JRNL AUTH K.J.NEWBERRY,R.G.BRENNAN JRNL TITL THE STRUCTURAL MECHANISM FOR TRANSCRIPTION ACTIVATION BY JRNL TITL 2 MERR FAMILY MEMBER MULTIDRUG TRANSPORTER ACTIVATION, N JRNL TITL 3 TERMINUS. JRNL REF J.BIOL.CHEM. V. 279 20356 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14985361 JRNL DOI 10.1074/JBC.M400960200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.E.HELDWEIN,R.G.BRENNAN REMARK 1 TITL CRYSTAL STRUCTURE OF THE TRANSCRIPTION ACTIVATOR BMRR BOUND REMARK 1 TITL 2 TO DNA AND A DRUG REMARK 1 REF NATURE V. 409 378 2001 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/35053138 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 33613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1694 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5289 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 271 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2254 REMARK 3 NUCLEIC ACID ATOMS : 468 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.88000 REMARK 3 B22 (A**2) : 6.88000 REMARK 3 B33 (A**2) : -13.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.660 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.850 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.550 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.200 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 57.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : LIGANDS_PAR.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : LIGANDS_TOP.TXT REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : SINGLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 86.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1EXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.27500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.42500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.85000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.42500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.27500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATE BY REMARK 300 THE OPERATIONS: X, -Y, 1/2 - Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.85000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 202 84.54 38.38 REMARK 500 THR A 210 -151.48 -156.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4P A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EXI RELATED DB: PDB REMARK 900 THE SAME PROTEIN-DNA COMPLEX WITH TPSB INSTEAD OF TPP REMARK 900 RELATED ID: 1EXJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN-DNA COMPLEX TO LOWER RESOLUTION REMARK 900 RELATED ID: 1BOW RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF PROTEIN REMARK 900 RELATED ID: 2BOW RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF PROTEIN BOUND TO TPP REMARK 900 RELATED ID: 1R8D RELATED DB: PDB REMARK 900 RELATED TRANSCRIPTIONAL ACTIVATOR FROM THE MERR FAMILY DBREF 1R8E A 1 278 UNP P39075 BMRR_BACSU 1 278 DBREF 1R8E B -12 12 PDB 1R8E 1R8E -12 12 SEQRES 1 B 23 DG DA DC DC DC DT DC DC DC DC DT DT DA SEQRES 2 B 23 DG DG DG DG DA DG DG DG DT DC SEQRES 1 A 278 MET LYS GLU SER TYR TYR SER ILE GLY GLU VAL SER LYS SEQRES 2 A 278 LEU ALA ASN VAL SER ILE LYS ALA LEU ARG TYR TYR ASP SEQRES 3 A 278 LYS ILE ASP LEU PHE LYS PRO ALA TYR VAL ASP PRO ASP SEQRES 4 A 278 THR SER TYR ARG TYR TYR THR ASP SER GLN LEU ILE HIS SEQRES 5 A 278 LEU ASP LEU ILE LYS SER LEU LYS TYR ILE GLY THR PRO SEQRES 6 A 278 LEU GLU GLU MET LYS LYS ALA GLN ASP LEU GLU MET GLU SEQRES 7 A 278 GLU LEU PHE ALA PHE TYR THR GLU GLN GLU ARG GLN ILE SEQRES 8 A 278 ARG GLU LYS LEU ASP PHE LEU SER ALA LEU GLU GLN THR SEQRES 9 A 278 ILE SER LEU VAL LYS LYS ARG MET LYS ARG GLN MET GLU SEQRES 10 A 278 TYR PRO ALA LEU GLY GLU VAL PHE VAL LEU ASP GLU GLU SEQRES 11 A 278 GLU ILE ARG ILE ILE GLN THR GLU ALA GLU GLY ILE GLY SEQRES 12 A 278 PRO GLU ASN VAL LEU ASN ALA SER TYR SER LYS LEU LYS SEQRES 13 A 278 LYS PHE ILE GLU SER ALA ASP GLY PHE THR ASN ASN SER SEQRES 14 A 278 TYR GLY ALA THR PHE SER PHE GLN PRO TYR THR SER ILE SEQRES 15 A 278 ASP GLU MET THR TYR ARG HIS ILE PHE THR PRO VAL LEU SEQRES 16 A 278 THR ASN LYS GLN ILE SER SER ILE THR PRO ASP MET GLU SEQRES 17 A 278 ILE THR THR ILE PRO LYS GLY ARG TYR ALA CYS ILE ALA SEQRES 18 A 278 TYR ASN PHE SER PRO GLU HIS TYR PHE LEU ASN LEU GLN SEQRES 19 A 278 LYS LEU ILE LYS TYR ILE ALA ASP ARG GLN LEU THR VAL SEQRES 20 A 278 VAL SER ASP VAL TYR GLU LEU ILE ILE PRO ILE HIS TYR SEQRES 21 A 278 SER PRO LYS LYS GLN GLU GLU TYR ARG VAL GLU MET LYS SEQRES 22 A 278 ILE ARG ILE ALA GLU HET GOL B 203 6 HET GOL B 205 6 HET P4P A 400 25 HET IMD A 302 5 HET IMD A 303 5 HET IMD A 304 5 HET IMD A 305 5 HET IMD A 306 5 HET IMD A 307 5 HET IMD A 308 5 HET IMD A 309 5 HET IMD A 310 5 HET IMD A 311 5 HET IMD A 312 5 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HETNAM GOL GLYCEROL HETNAM P4P TETRAPHENYLPHOSPHONIUM HETNAM IMD IMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 5 P4P C24 H20 P 1+ FORMUL 6 IMD 11(C3 H5 N2 1+) FORMUL 20 HOH *131(H2 O) HELIX 1 1 ILE A 8 ASN A 16 1 9 HELIX 2 2 SER A 18 ILE A 28 1 11 HELIX 3 3 SER A 48 LEU A 50 5 3 HELIX 4 4 ILE A 51 ILE A 62 1 12 HELIX 5 5 PRO A 65 GLN A 73 1 9 HELIX 6 6 GLU A 76 GLU A 117 1 42 HELIX 7 7 LEU A 148 SER A 151 5 4 HELIX 8 8 TYR A 152 GLY A 164 1 13 HELIX 9 9 SER A 181 MET A 185 5 5 HELIX 10 10 SER A 225 ARG A 243 1 19 SHEET 1 A 3 TYR A 5 SER A 7 0 SHEET 2 A 3 ARG A 43 THR A 46 -1 O TYR A 45 N TYR A 6 SHEET 3 A 3 TYR A 35 VAL A 36 -1 N TYR A 35 O TYR A 44 SHEET 1 B 8 PHE A 125 GLU A 129 0 SHEET 2 B 8 GLY A 215 ASN A 223 -1 O CYS A 219 N PHE A 125 SHEET 3 B 8 TYR A 268 ILE A 276 -1 O VAL A 270 N TYR A 222 SHEET 4 B 8 VAL A 247 PRO A 257 -1 N TYR A 252 O LYS A 273 SHEET 5 B 8 TYR A 170 PHE A 174 -1 N PHE A 174 O VAL A 251 SHEET 6 B 8 HIS A 189 PRO A 193 -1 O PHE A 191 N GLY A 171 SHEET 7 B 8 ILE A 132 GLU A 138 -1 N ILE A 135 O THR A 192 SHEET 8 B 8 GLU A 208 ILE A 212 -1 O GLU A 208 N GLN A 136 SITE 1 AC1 9 TYR A 5 TYR A 35 TYR A 44 PHE A 230 SITE 2 AC1 9 LEU A 231 GLN A 234 LYS A 235 LYS A 238 SITE 3 AC1 9 IMD A 312 SITE 1 AC2 6 TYR A 152 TYR A 170 TYR A 187 GLU A 253 SITE 2 AC2 6 ILE A 255 IMD A 307 SITE 1 AC3 2 PRO A 144 HOH A 477 SITE 1 AC4 4 PRO A 144 TYR A 187 PHE A 224 ILE A 255 SITE 1 AC5 5 GLY A 141 ASP A 183 MET A 185 THR A 186 SITE 2 AC5 5 HOH A 460 SITE 1 AC6 4 GLU A 138 GLU A 140 SER A 151 LYS A 154 SITE 1 AC7 5 VAL A 147 LEU A 148 ASN A 149 IMD A 302 SITE 2 AC7 5 HOH A 521 SITE 1 AC8 3 GLU A 78 LYS A 113 GLU A 117 SITE 1 AC9 6 ASP A 54 SER A 58 TYR A 84 PHE A 165 SITE 2 AC9 6 THR A 166 ASN A 168 SITE 1 BC1 4 ARG A 133 THR A 196 LYS A 198 ILE A 200 SITE 1 BC2 2 GLN A 177 GLU A 184 SITE 1 BC3 2 TYR A 5 P4P A 400 SITE 1 BC4 6 PHE A 174 SER A 175 THR A 186 ARG A 188 SITE 2 BC4 6 PRO A 205 HOH A 407 SITE 1 BC5 6 PHE A 176 ILE A 203 GLU A 208 ILE A 209 SITE 2 BC5 6 SER A 249 ASP A 250 SITE 1 BC6 2 DT B -2 DT B 1 SITE 1 BC7 3 GLN A 115 TYR A 118 ARG A 269 SITE 1 BC8 2 DG B 10 DT B 11 CRYST1 107.280 107.280 145.700 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006863 0.00000