PDB Short entry for 1R8Q HEADER PROTEIN TRANSPORT/EXCHANGE FACTOR 28-OCT-03 1R8Q TITLE FULL-LENGTH ARF1-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ARNO; COMPND 7 CHAIN: E, F; COMPND 8 FRAGMENT: SEC7 DOMAIN (RESIDUES 50-252); COMPND 9 SYNONYM: ARF NUCLEOTIDE-BINDING SITE OPENER, CYTOHESIN 2, ARF COMPND 10 EXCHANGE FACTOR; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: ARF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PSCD2, ARNO; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS PROTEIN TRANSPORT/EXCHANGE FACTOR, PROTEIN TRANSPORT-EXCHANGE FACTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.RENAULT,B.GUIBERT,J.CHERFILS REVDAT 6 14-FEB-24 1R8Q 1 REMARK REVDAT 5 27-OCT-21 1R8Q 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1R8Q 1 REMARK REVDAT 3 13-JUL-11 1R8Q 1 VERSN REVDAT 2 24-FEB-09 1R8Q 1 VERSN REVDAT 1 20-JAN-04 1R8Q 0 JRNL AUTH L.RENAULT,B.GUIBERT,J.CHERFILS JRNL TITL STRUCTURAL SNAPSHOTS OF THE MECHANISM AND INHIBITION OF A JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR JRNL REF NATURE V. 426 525 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 14654833 JRNL DOI 10.1038/NATURE02197 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 71213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 47 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.756 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6255 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5631 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8452 ; 1.971 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13080 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 739 ; 6.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 933 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6870 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1277 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1384 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6665 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3597 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 303 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.201 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.292 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3687 ; 1.409 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5934 ; 2.483 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2568 ; 3.539 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2518 ; 5.667 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 180 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0860 20.5566 35.9361 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.1705 REMARK 3 T33: 0.1298 T12: -0.0174 REMARK 3 T13: 0.0105 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.7756 L22: 2.0550 REMARK 3 L33: 1.0253 L12: 0.4445 REMARK 3 L13: -0.1494 L23: 0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.0471 S13: -0.0396 REMARK 3 S21: -0.0255 S22: 0.0054 S23: 0.0768 REMARK 3 S31: -0.0794 S32: -0.0107 S33: 0.0504 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 56 E 246 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1166 -7.7332 38.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1197 REMARK 3 T33: 0.1923 T12: 0.0128 REMARK 3 T13: 0.0938 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.0597 L22: 1.4961 REMARK 3 L33: 1.5207 L12: -1.1537 REMARK 3 L13: 0.6773 L23: -0.7205 REMARK 3 S TENSOR REMARK 3 S11: -0.1526 S12: -0.1827 S13: -0.4283 REMARK 3 S21: -0.0048 S22: 0.0601 S23: 0.1650 REMARK 3 S31: 0.1773 S32: 0.0759 S33: 0.0925 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 180 REMARK 3 RESIDUE RANGE : B 501 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5391 -5.0185 6.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.2651 T22: 0.1298 REMARK 3 T33: 0.0972 T12: -0.0438 REMARK 3 T13: -0.0696 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.7038 L22: 1.6022 REMARK 3 L33: 3.5044 L12: 0.1089 REMARK 3 L13: 0.0635 L23: 1.6139 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.1051 S13: 0.0751 REMARK 3 S21: -0.4823 S22: 0.0629 S23: 0.1028 REMARK 3 S31: -0.5768 S32: 0.2154 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 56 F 249 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6428 -11.2697 34.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1237 REMARK 3 T33: 0.1341 T12: 0.0449 REMARK 3 T13: 0.0180 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.4369 L22: 2.4232 REMARK 3 L33: 0.8812 L12: 0.9375 REMARK 3 L13: -0.0364 L23: -0.2851 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.1031 S13: 0.0428 REMARK 3 S21: 0.1783 S22: 0.0837 S23: 0.2117 REMARK 3 S31: 0.0140 S32: 0.0194 S33: -0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 11.77 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 (MOLREP) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 175MM NH4 FLUORIDE, REMARK 280 100MM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.54050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.16300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.88650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.16300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.54050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.88650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN HETERO-DIMER (CHAIN A WITH E REMARK 300 OR CHAIN B WITH F) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 69.08100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.54050 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 59.16300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 69.08100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 54.88650 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 59.16300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 54.88650 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 59.16300 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.54050 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 59.16300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -34.54050 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -54.88650 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 118.32600 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 34.54050 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -54.88650 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 118.32600 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 109.77300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 69.08100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 109.77300 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 54.88650 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 59.16300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 181 REMARK 465 LEU E 50 REMARK 465 GLU E 51 REMARK 465 ALA E 52 REMARK 465 ASN E 53 REMARK 465 GLU E 54 REMARK 465 GLY E 55 REMARK 465 GLU E 247 REMARK 465 ASP E 248 REMARK 465 ASP E 249 REMARK 465 GLY E 250 REMARK 465 ASN E 251 REMARK 465 ASP E 252 REMARK 465 MET B 1 REMARK 465 LYS B 181 REMARK 465 LEU F 50 REMARK 465 GLU F 51 REMARK 465 ALA F 52 REMARK 465 ASN F 53 REMARK 465 GLU F 54 REMARK 465 GLY F 55 REMARK 465 GLY F 250 REMARK 465 ASN F 251 REMARK 465 ASP F 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 152 OE1 GLN A 176 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 141 OH TYR B 35 3555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 106 CD GLU A 106 OE1 0.077 REMARK 500 MET B 22 SD MET B 22 CE -0.404 REMARK 500 PRO B 47 CA PRO B 47 C 0.168 REMARK 500 ASN B 152 CG ASN B 152 ND2 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 84 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG E 63 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG E 162 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG E 162 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP E 183 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG E 205 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG E 239 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 PRO B 47 N - CA - C ANGL. DEV. = 24.1 DEGREES REMARK 500 ASP F 75 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG F 152 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG F 152 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG F 205 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG F 205 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG F 239 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG F 239 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 106.49 -51.46 REMARK 500 PHE A 13 44.09 150.18 REMARK 500 LYS A 16 141.96 133.53 REMARK 500 LYS A 59 121.98 78.05 REMARK 500 ASN A 60 -22.63 68.73 REMARK 500 ASN A 84 66.15 -114.58 REMARK 500 LYS A 127 32.04 73.78 REMARK 500 LYS E 57 81.12 -25.27 REMARK 500 THR E 58 -45.94 165.55 REMARK 500 ASN B 3 -48.70 -154.60 REMARK 500 ILE B 4 -42.08 115.28 REMARK 500 PHE B 13 92.45 5.13 REMARK 500 LYS B 15 -92.23 -154.32 REMARK 500 ALA B 27 6.72 80.88 REMARK 500 LEU B 39 -160.88 58.66 REMARK 500 LYS B 59 93.31 35.11 REMARK 500 ASN B 60 -49.76 83.56 REMARK 500 ASP F 75 101.11 -162.84 REMARK 500 GLU F 222 84.24 40.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 14 LYS A 15 -149.00 REMARK 500 ILE B 46 PRO B 47 146.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 FOR THE HETERO-ATOM WITH RESIDUE SEQUENCE NUMBER 601, A REMARK 600 ZN ION WAS MODELLED TO EXPLAIN A STRONG ELECTRON DENSITY REMARK 600 CORRESPONDING TO AN ION (CLOSE TO 2 GLU AND 2 HIS REMARK 600 RESIDUES) BASED ONLY ON THE HOMOLOGY OF THE BINDING SITE REMARK 600 WITH THE ZN BINDING SITE IN PDB 14FT. HOWEVER, ZN WAS NOT REMARK 600 PRESENT IN THE CRYSTALLIZATION BUFFER. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 G3D A 401 O2B 94.2 REMARK 620 3 HOH A 410 O 85.5 95.7 REMARK 620 4 HOH A 450 O 87.7 175.3 88.7 REMARK 620 5 HOH A 504 O 171.6 92.2 88.6 86.3 REMARK 620 6 HOH A 510 O 95.2 90.3 173.8 85.2 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 127 NE2 REMARK 620 2 ASP E 131 OD2 107.2 REMARK 620 3 HIS F 127 NE2 103.3 126.9 REMARK 620 4 ASP F 131 OD2 121.6 90.2 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 G3D B 501 O2B 91.9 REMARK 620 3 HOH B 517 O 86.8 175.9 REMARK 620 4 HOH B 563 O 95.5 88.9 87.4 REMARK 620 5 HOH B 567 O 174.2 93.9 87.5 84.9 REMARK 620 6 HOH B 570 O 89.8 95.8 88.1 172.8 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3D A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AFB A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3D B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AFB B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R8M RELATED DB: PDB REMARK 900 THE SAME MUTATED SEC7 DOMAIN OF ARNO SOLVED ISOLATED REMARK 900 RELATED ID: 1PBV RELATED DB: PDB REMARK 900 THE WILD TYPE CONSTRUCT OF THE SEC7 DOMAIN OF ARNO SOLVED ISOLATED REMARK 900 RELATED ID: 1R8R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ABORTIVE ARF1[D1-17]/GDP/MG/BREFELDIN A/ REMARK 900 ARNO-SEC7[F190Y/A191S/S198D/P208M] COMPLEX REMARK 900 RELATED ID: 1R8S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ABORTIVE ARF1[D1-17]/GDP/ARNO-SEC7[F190Y/ REMARK 900 A191S/S198D/P208M/E156K] COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ENGINEERED MUTATIONS IN THE ARNO STRUCTURE REMARK 999 (F190Y, A191S, S198D, P208M) ARE BREFELDIN A- REMARK 999 SENSITIZING MUTATIONS. DBREF 1R8Q A 1 181 UNP P84080 ARF1_BOVIN 1 180 DBREF 1R8Q E 50 252 UNP Q99418 CYH2_HUMAN 50 252 DBREF 1R8Q B 1 181 UNP P84080 ARF1_BOVIN 1 180 DBREF 1R8Q F 50 252 UNP Q99418 CYH2_HUMAN 50 252 SEQADV 1R8Q TYR E 190 UNP Q99418 PHE 190 ENGINEERED MUTATION SEQADV 1R8Q SER E 191 UNP Q99418 ALA 191 ENGINEERED MUTATION SEQADV 1R8Q ASP E 198 UNP Q99418 SER 198 ENGINEERED MUTATION SEQADV 1R8Q MET E 208 UNP Q99418 PRO 208 ENGINEERED MUTATION SEQADV 1R8Q TYR F 190 UNP Q99418 PHE 190 ENGINEERED MUTATION SEQADV 1R8Q SER F 191 UNP Q99418 ALA 191 ENGINEERED MUTATION SEQADV 1R8Q ASP F 198 UNP Q99418 SER 198 ENGINEERED MUTATION SEQADV 1R8Q MET F 208 UNP Q99418 PRO 208 ENGINEERED MUTATION SEQRES 1 A 181 MET GLY ASN ILE PHE ALA ASN LEU PHE LYS GLY LEU PHE SEQRES 2 A 181 GLY LYS LYS GLU MET ARG ILE LEU MET VAL GLY LEU ASP SEQRES 3 A 181 ALA ALA GLY LYS THR THR ILE LEU TYR LYS LEU LYS LEU SEQRES 4 A 181 GLY GLU ILE VAL THR THR ILE PRO THR ILE GLY PHE ASN SEQRES 5 A 181 VAL GLU THR VAL GLU TYR LYS ASN ILE SER PHE THR VAL SEQRES 6 A 181 TRP ASP VAL GLY GLY GLN ASP LYS ILE ARG PRO LEU TRP SEQRES 7 A 181 ARG HIS TYR PHE GLN ASN THR GLN GLY LEU ILE PHE VAL SEQRES 8 A 181 VAL ASP SER ASN ASP ARG GLU ARG VAL ASN GLU ALA ARG SEQRES 9 A 181 GLU GLU LEU MET ARG MET LEU ALA GLU ASP GLU LEU ARG SEQRES 10 A 181 ASP ALA VAL LEU LEU VAL PHE ALA ASN LYS GLN ASP LEU SEQRES 11 A 181 PRO ASN ALA MET ASN ALA ALA GLU ILE THR ASP LYS LEU SEQRES 12 A 181 GLY LEU HIS SER LEU ARG HIS ARG ASN TRP TYR ILE GLN SEQRES 13 A 181 ALA THR CYS ALA THR SER GLY ASP GLY LEU TYR GLU GLY SEQRES 14 A 181 LEU ASP TRP LEU SER ASN GLN LEU ARG ASN GLN LYS SEQRES 1 E 203 LEU GLU ALA ASN GLU GLY SER LYS THR LEU GLN ARG ASN SEQRES 2 E 203 ARG LYS MET ALA MET GLY ARG LYS LYS PHE ASN MET ASP SEQRES 3 E 203 PRO LYS LYS GLY ILE GLN PHE LEU VAL GLU ASN GLU LEU SEQRES 4 E 203 LEU GLN ASN THR PRO GLU GLU ILE ALA ARG PHE LEU TYR SEQRES 5 E 203 LYS GLY GLU GLY LEU ASN LYS THR ALA ILE GLY ASP TYR SEQRES 6 E 203 LEU GLY GLU ARG GLU GLU LEU ASN LEU ALA VAL LEU HIS SEQRES 7 E 203 ALA PHE VAL ASP LEU HIS GLU PHE THR ASP LEU ASN LEU SEQRES 8 E 203 VAL GLN ALA LEU ARG GLN PHE LEU TRP SER PHE ARG LEU SEQRES 9 E 203 PRO GLY GLU ALA GLN LYS ILE ASP ARG MET MET GLU ALA SEQRES 10 E 203 PHE ALA GLN ARG TYR CYS LEU CYS ASN PRO GLY VAL PHE SEQRES 11 E 203 GLN SER THR ASP THR CYS TYR VAL LEU SER TYR SER VAL SEQRES 12 E 203 ILE MET LEU ASN THR ASP LEU HIS ASN PRO ASN VAL ARG SEQRES 13 E 203 ASP LYS MET GLY LEU GLU ARG PHE VAL ALA MET ASN ARG SEQRES 14 E 203 GLY ILE ASN GLU GLY GLY ASP LEU PRO GLU GLU LEU LEU SEQRES 15 E 203 ARG ASN LEU TYR ASP SER ILE ARG ASN GLU PRO PHE LYS SEQRES 16 E 203 ILE PRO GLU ASP ASP GLY ASN ASP SEQRES 1 B 181 MET GLY ASN ILE PHE ALA ASN LEU PHE LYS GLY LEU PHE SEQRES 2 B 181 GLY LYS LYS GLU MET ARG ILE LEU MET VAL GLY LEU ASP SEQRES 3 B 181 ALA ALA GLY LYS THR THR ILE LEU TYR LYS LEU LYS LEU SEQRES 4 B 181 GLY GLU ILE VAL THR THR ILE PRO THR ILE GLY PHE ASN SEQRES 5 B 181 VAL GLU THR VAL GLU TYR LYS ASN ILE SER PHE THR VAL SEQRES 6 B 181 TRP ASP VAL GLY GLY GLN ASP LYS ILE ARG PRO LEU TRP SEQRES 7 B 181 ARG HIS TYR PHE GLN ASN THR GLN GLY LEU ILE PHE VAL SEQRES 8 B 181 VAL ASP SER ASN ASP ARG GLU ARG VAL ASN GLU ALA ARG SEQRES 9 B 181 GLU GLU LEU MET ARG MET LEU ALA GLU ASP GLU LEU ARG SEQRES 10 B 181 ASP ALA VAL LEU LEU VAL PHE ALA ASN LYS GLN ASP LEU SEQRES 11 B 181 PRO ASN ALA MET ASN ALA ALA GLU ILE THR ASP LYS LEU SEQRES 12 B 181 GLY LEU HIS SER LEU ARG HIS ARG ASN TRP TYR ILE GLN SEQRES 13 B 181 ALA THR CYS ALA THR SER GLY ASP GLY LEU TYR GLU GLY SEQRES 14 B 181 LEU ASP TRP LEU SER ASN GLN LEU ARG ASN GLN LYS SEQRES 1 F 203 LEU GLU ALA ASN GLU GLY SER LYS THR LEU GLN ARG ASN SEQRES 2 F 203 ARG LYS MET ALA MET GLY ARG LYS LYS PHE ASN MET ASP SEQRES 3 F 203 PRO LYS LYS GLY ILE GLN PHE LEU VAL GLU ASN GLU LEU SEQRES 4 F 203 LEU GLN ASN THR PRO GLU GLU ILE ALA ARG PHE LEU TYR SEQRES 5 F 203 LYS GLY GLU GLY LEU ASN LYS THR ALA ILE GLY ASP TYR SEQRES 6 F 203 LEU GLY GLU ARG GLU GLU LEU ASN LEU ALA VAL LEU HIS SEQRES 7 F 203 ALA PHE VAL ASP LEU HIS GLU PHE THR ASP LEU ASN LEU SEQRES 8 F 203 VAL GLN ALA LEU ARG GLN PHE LEU TRP SER PHE ARG LEU SEQRES 9 F 203 PRO GLY GLU ALA GLN LYS ILE ASP ARG MET MET GLU ALA SEQRES 10 F 203 PHE ALA GLN ARG TYR CYS LEU CYS ASN PRO GLY VAL PHE SEQRES 11 F 203 GLN SER THR ASP THR CYS TYR VAL LEU SER TYR SER VAL SEQRES 12 F 203 ILE MET LEU ASN THR ASP LEU HIS ASN PRO ASN VAL ARG SEQRES 13 F 203 ASP LYS MET GLY LEU GLU ARG PHE VAL ALA MET ASN ARG SEQRES 14 F 203 GLY ILE ASN GLU GLY GLY ASP LEU PRO GLU GLU LEU LEU SEQRES 15 F 203 ARG ASN LEU TYR ASP SER ILE ARG ASN GLU PRO PHE LYS SEQRES 16 F 203 ILE PRO GLU ASP ASP GLY ASN ASP HET MG A 402 1 HET G3D A 401 32 HET AFB A 403 20 HET ZN E 601 1 HET MG B 502 1 HET G3D B 501 32 HET AFB B 503 20 HETNAM MG MAGNESIUM ION HETNAM G3D GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE HETNAM AFB 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6- HETNAM 2 AFB METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE HETNAM ZN ZINC ION HETSYN AFB BREFELDIN A FORMUL 5 MG 2(MG 2+) FORMUL 6 G3D 2(C10 H16 N5 O14 P3) FORMUL 7 AFB 2(C16 H24 O4) FORMUL 8 ZN ZN 2+ FORMUL 12 HOH *345(H2 O) HELIX 1 1 ASN A 3 LEU A 8 1 6 HELIX 2 2 GLY A 29 LYS A 38 1 10 HELIX 3 3 GLN A 71 LEU A 77 5 7 HELIX 4 4 TRP A 78 GLN A 83 1 6 HELIX 5 5 ASP A 96 GLU A 98 5 3 HELIX 6 6 ARG A 99 ALA A 112 1 14 HELIX 7 7 GLU A 113 ARG A 117 5 5 HELIX 8 8 ASN A 135 LEU A 143 1 9 HELIX 9 9 GLY A 144 LEU A 148 5 5 HELIX 10 10 GLY A 165 GLN A 180 1 16 HELIX 11 11 THR E 58 ASP E 75 1 18 HELIX 12 12 ASP E 75 ASN E 86 1 12 HELIX 13 13 THR E 92 GLY E 103 1 12 HELIX 14 14 ASN E 107 GLY E 116 1 10 HELIX 15 15 GLU E 119 LEU E 132 1 14 HELIX 16 16 ASN E 139 SER E 150 1 12 HELIX 17 17 GLU E 156 ASN E 175 1 20 HELIX 18 18 SER E 181 ASN E 201 1 21 HELIX 19 19 GLY E 209 ASN E 217 1 9 HELIX 20 20 PRO E 227 GLU E 241 1 15 HELIX 21 21 ILE B 4 PHE B 9 1 6 HELIX 22 22 LEU B 12 LYS B 16 5 5 HELIX 23 23 GLY B 29 LYS B 38 1 10 HELIX 24 24 GLN B 71 LEU B 77 5 7 HELIX 25 25 TRP B 78 GLN B 83 1 6 HELIX 26 26 ASP B 96 GLU B 98 5 3 HELIX 27 27 ARG B 99 ALA B 112 1 14 HELIX 28 28 GLU B 113 ARG B 117 5 5 HELIX 29 29 ASN B 135 LEU B 143 1 9 HELIX 30 30 GLY B 144 LEU B 148 5 5 HELIX 31 31 GLY B 165 GLN B 180 1 16 HELIX 32 32 SER F 56 ASP F 75 1 20 HELIX 33 33 ASP F 75 ASN F 86 1 12 HELIX 34 34 THR F 92 GLY F 103 1 12 HELIX 35 35 ASN F 107 GLY F 116 1 10 HELIX 36 36 GLU F 119 HIS F 133 1 15 HELIX 37 37 ASN F 139 SER F 150 1 12 HELIX 38 38 GLU F 156 ASN F 175 1 20 HELIX 39 39 SER F 181 ASN F 201 1 21 HELIX 40 40 GLY F 209 ARG F 218 1 10 HELIX 41 41 PRO F 227 GLU F 241 1 15 SHEET 1 A 6 THR A 55 GLU A 57 0 SHEET 2 A 6 ILE A 61 VAL A 65 -1 O PHE A 63 N VAL A 56 SHEET 3 A 6 MET A 18 VAL A 23 1 N MET A 22 O THR A 64 SHEET 4 A 6 GLY A 87 ASP A 93 1 O ILE A 89 N LEU A 21 SHEET 5 A 6 VAL A 120 ASN A 126 1 O LEU A 122 N PHE A 90 SHEET 6 A 6 TRP A 153 ALA A 157 1 O GLN A 156 N VAL A 123 SHEET 1 B 6 THR B 55 TYR B 58 0 SHEET 2 B 6 ILE B 61 VAL B 65 -1 O ILE B 61 N TYR B 58 SHEET 3 B 6 MET B 18 VAL B 23 1 N MET B 22 O THR B 64 SHEET 4 B 6 GLY B 87 ASP B 93 1 O VAL B 91 N VAL B 23 SHEET 5 B 6 VAL B 120 ASN B 126 1 O VAL B 120 N LEU B 88 SHEET 6 B 6 TRP B 153 ALA B 157 1 O TYR B 154 N VAL B 123 LINK OG1 THR A 31 MG MG A 402 1555 1555 1.97 LINK O2B G3D A 401 MG MG A 402 1555 1555 1.84 LINK MG MG A 402 O HOH A 410 1555 1555 1.84 LINK MG MG A 402 O HOH A 450 1555 1555 1.90 LINK MG MG A 402 O HOH A 504 1555 1555 1.77 LINK MG MG A 402 O HOH A 510 1555 1555 1.98 LINK NE2 HIS E 127 ZN ZN E 601 1555 1555 2.05 LINK OD2 ASP E 131 ZN ZN E 601 1555 1555 2.05 LINK ZN ZN E 601 NE2 HIS F 127 1555 1655 2.08 LINK ZN ZN E 601 OD2 ASP F 131 1555 1655 2.04 LINK OG1 THR B 31 MG MG B 502 1555 1555 1.77 LINK O2B G3D B 501 MG MG B 502 1555 1555 1.98 LINK MG MG B 502 O HOH B 517 1555 1555 2.07 LINK MG MG B 502 O HOH B 563 1555 1555 1.93 LINK MG MG B 502 O HOH B 567 1555 1555 1.57 LINK MG MG B 502 O HOH B 570 1555 1555 1.71 SITE 1 AC1 6 THR A 31 G3D A 401 HOH A 410 HOH A 450 SITE 2 AC1 6 HOH A 504 HOH A 510 SITE 1 AC2 6 THR B 31 G3D B 501 HOH B 517 HOH B 563 SITE 2 AC2 6 HOH B 567 HOH B 570 SITE 1 AC3 4 HIS E 127 ASP E 131 HIS F 127 ASP F 131 SITE 1 AC4 21 ALA A 27 ALA A 28 GLY A 29 LYS A 30 SITE 2 AC4 21 THR A 31 THR A 32 ASN A 126 LYS A 127 SITE 3 AC4 21 ASP A 129 LEU A 130 CYS A 159 ALA A 160 SITE 4 AC4 21 THR A 161 MG A 402 HOH A 410 HOH A 432 SITE 5 AC4 21 HOH A 435 HOH A 445 HOH A 504 HOH A 510 SITE 6 AC4 21 LYS B 142 SITE 1 AC5 11 VAL A 53 THR A 64 VAL A 65 TRP A 66 SITE 2 AC5 11 ASP A 67 TRP A 78 TYR A 81 HOH A 406 SITE 3 AC5 11 HOH A 414 TYR E 190 MET E 194 SITE 1 AC6 19 LYS A 142 ALA B 27 ALA B 28 GLY B 29 SITE 2 AC6 19 LYS B 30 THR B 31 THR B 32 ASN B 126 SITE 3 AC6 19 LYS B 127 ASP B 129 LEU B 130 CYS B 159 SITE 4 AC6 19 ALA B 160 THR B 161 MG B 502 HOH B 563 SITE 5 AC6 19 HOH B 567 HOH B 569 HOH B 570 SITE 1 AC7 13 VAL B 53 THR B 64 VAL B 65 TRP B 66 SITE 2 AC7 13 ASP B 67 TRP B 78 TYR B 81 HOH B 506 SITE 3 AC7 13 HOH B 508 HOH B 513 TYR F 190 MET F 194 SITE 4 AC7 13 THR F 197 CRYST1 69.081 109.773 118.326 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008451 0.00000