PDB Short entry for 1RDK HEADER LECTIN 05-SEP-95 1RDK TITLE MANNOSE-BINDING PROTEIN, SUBTILISIN DIGEST FRAGMENT COMPLEX WITH D- TITLE 2 GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-BINDING PROTEIN-C; COMPND 3 CHAIN: 1, 2; COMPND 4 FRAGMENT: SUBTILISIN FRAGMENT (RESIDUES 114 - 226); COMPND 5 SYNONYM: SUB-MBP-C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS RATTUS; SOURCE 3 ORGANISM_COMMON: BLACK RAT; SOURCE 4 ORGANISM_TAXID: 10117; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PINIIIOMPA2; SOURCE 9 OTHER_DETAILS: THE BACTERIALLY EXPRESSED MATERIAL IS DIGESTED WITH SOURCE 10 SUBTILISIN TO PRODUCE THE PROTEIN USED IN THE CRYSTAL STRUCTURE SOURCE 11 ANALYSIS KEYWDS C-TYPE LECTIN, CALCIUM-BINDING PROTEIN, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR K.K.-S.NG,K.DRICKAMER,W.I.WEIS REVDAT 3 29-JUL-20 1RDK 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 24-FEB-09 1RDK 1 VERSN REVDAT 1 08-MAR-96 1RDK 0 JRNL AUTH K.K.NG,K.DRICKAMER,W.I.WEIS JRNL TITL STRUCTURAL ANALYSIS OF MONOSACCHARIDE RECOGNITION BY RAT JRNL TITL 2 LIVER MANNOSE-BINDING PROTEIN. JRNL REF J.BIOL.CHEM. V. 271 663 1996 JRNL REFN ISSN 0021-9258 JRNL PMID 8557671 JRNL DOI 10.1074/JBC.271.2.663 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.I.WEIS,K.DRICKAMER,W.A.HENDRICKSON REMARK 1 TITL STRUCTURE OF A C-TYPE MANNOSE-BINDING PROTEIN COMPLEXED WITH REMARK 1 TITL 2 AN OLIGOSACCHARIDE REMARK 1 REF NATURE V. 360 127 1992 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.I.WEIS,R.KAHN,R.FOURME,K.DRICKAMER,W.A.HENDRICKSON REMARK 1 TITL STRUCTURE OF THE CALCIUM-DEPENDENT LECTIN DOMAIN FROM A RAT REMARK 1 TITL 2 MANNOSE-BINDING PROTEIN DETERMINED BY MAD PHASING REMARK 1 REF SCIENCE V. 254 1608 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.I.WEIS,G.V.CRICHLOW,H.M.K.MURTHY,W.A.HENDRICKSON, REMARK 1 AUTH 2 K.DRICKAMER REMARK 1 TITL PHYSICAL CHARACTERIZATION AND CRYSTALLIZATION OF THE REMARK 1 TITL 2 CARBOHYDRATE-RECOGNITION DOMAIN OF A MANNOSE-BINDING PROTEIN REMARK 1 TITL 3 FROM RAT REMARK 1 REF J.BIOL.CHEM. V. 266 20678 1991 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.A.CHILDS,T.FEIZI,C.-T.YUEN,K.DRICKAMER,M.S.QUESENBERRY REMARK 1 TITL DIFFERENTIAL RECOGNITION OF CORE AND TERMINAL PORTIONS OF REMARK 1 TITL 2 OLIGOSACCHARIDE LIGANDS BY CARBOHYDRATE-RECOGNITION DOMAINS REMARK 1 TITL 3 OF TWO MANNOSE-BINDING PROTEINS REMARK 1 REF J.BIOL.CHEM. V. 265 20770 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 19350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.400 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.400 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MTRIX REMARK 300 THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW REMARK 300 DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE REMARK 300 VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE REMARK 300 MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED REMARK 300 SECOND. REMARK 300 REMARK 300 APPLIED TO TRANSFORMED TO REMARK 300 MTRIX RESIDUES RESIDUES RMSD REMARK 300 M1 1 115 .. 1 225 2 115 .. 2 225 0.277 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS 1 114 REMARK 465 ASP 1 226 REMARK 465 ASP 2 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG 1 182 -67.94 -98.31 REMARK 500 ASN 1 185 49.58 -144.47 REMARK 500 ARG 2 182 -65.86 -102.99 REMARK 500 ASN 2 185 49.73 -142.96 REMARK 500 ASN 2 193 51.08 38.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GAL 1 1 O1 REMARK 620 2 GAL 1 1 O2 66.5 REMARK 620 3 GLU 1 190 OE1 129.9 72.6 REMARK 620 4 ASN 1 192 OD1 117.1 75.3 77.1 REMARK 620 5 GLU 1 198 OE1 74.0 109.8 149.7 74.7 REMARK 620 6 ASN 1 210 OD1 80.7 80.8 65.0 139.8 144.9 REMARK 620 7 ASP 1 211 O 73.2 136.0 126.5 142.0 73.8 75.8 REMARK 620 8 ASP 1 211 OD1 149.3 143.3 72.7 85.5 94.4 95.2 76.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 227 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 1 166 OD1 REMARK 620 2 ASP 1 166 OD2 48.5 REMARK 620 3 GLU 1 170 OE2 119.4 71.6 REMARK 620 4 GLU 1 170 OE1 99.8 74.4 48.6 REMARK 620 5 ASN 1 193 OD1 162.4 148.3 76.7 85.4 REMARK 620 6 GLU 1 198 O 91.0 126.7 139.9 157.0 78.7 REMARK 620 7 ASN 1 199 OD1 80.2 115.2 125.8 80.0 84.2 82.0 REMARK 620 8 HOH 1 274 O 100.1 80.1 74.7 122.5 90.9 74.6 156.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 2 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GAL 2 1 O2 REMARK 620 2 GAL 2 1 O1 66.6 REMARK 620 3 GLU 2 190 OE1 75.8 133.8 REMARK 620 4 ASN 2 192 OD1 78.2 120.7 74.0 REMARK 620 5 GLU 2 198 OE1 110.4 73.9 147.4 76.1 REMARK 620 6 ASN 2 210 OD1 80.0 79.1 68.5 140.1 143.3 REMARK 620 7 ASP 2 211 OD1 146.2 145.7 71.4 85.3 93.5 95.0 REMARK 620 8 ASP 2 211 O 132.8 70.1 126.9 142.8 73.5 74.2 75.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 2 227 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 2 166 OD2 REMARK 620 2 ASP 2 166 OD1 49.6 REMARK 620 3 GLU 2 170 OE2 71.6 120.5 REMARK 620 4 GLU 2 170 OE1 77.2 102.5 49.4 REMARK 620 5 ASN 2 193 OD1 149.9 157.9 78.6 80.9 REMARK 620 6 GLU 2 198 O 130.8 92.7 139.6 150.1 75.7 REMARK 620 7 ASN 2 199 OD1 113.2 76.3 128.5 80.5 82.8 78.3 REMARK 620 8 HOH 2 232 O 80.8 98.9 77.4 126.5 96.2 75.0 152.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CA1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITES REMARK 800 REMARK 800 SITE_IDENTIFIER: CA2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITES REMARK 800 REMARK 800 SITE_IDENTIFIER: CA3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITES REMARK 800 REMARK 800 SITE_IDENTIFIER: CA4 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITES DBREF 1RDK 1 114 226 UNP P08661 MBL2_RAT 132 244 DBREF 1RDK 2 114 226 UNP P08661 MBL2_RAT 132 244 SEQRES 1 1 113 LYS LYS TYR PHE MET SER SER VAL ARG ARG MET PRO LEU SEQRES 2 1 113 ASN ARG ALA LYS ALA LEU CYS SER GLU LEU GLN GLY THR SEQRES 3 1 113 VAL ALA THR PRO ARG ASN ALA GLU GLU ASN ARG ALA ILE SEQRES 4 1 113 GLN ASN VAL ALA LYS ASP VAL ALA PHE LEU GLY ILE THR SEQRES 5 1 113 ASP GLN ARG THR GLU ASN VAL PHE GLU ASP LEU THR GLY SEQRES 6 1 113 ASN ARG VAL ARG TYR THR ASN TRP ASN GLU GLY GLU PRO SEQRES 7 1 113 ASN ASN VAL GLY SER GLY GLU ASN CYS VAL VAL LEU LEU SEQRES 8 1 113 THR ASN GLY LYS TRP ASN ASP VAL PRO CYS SER ASP SER SEQRES 9 1 113 PHE LEU VAL VAL CYS GLU PHE SER ASP SEQRES 1 2 113 LYS LYS TYR PHE MET SER SER VAL ARG ARG MET PRO LEU SEQRES 2 2 113 ASN ARG ALA LYS ALA LEU CYS SER GLU LEU GLN GLY THR SEQRES 3 2 113 VAL ALA THR PRO ARG ASN ALA GLU GLU ASN ARG ALA ILE SEQRES 4 2 113 GLN ASN VAL ALA LYS ASP VAL ALA PHE LEU GLY ILE THR SEQRES 5 2 113 ASP GLN ARG THR GLU ASN VAL PHE GLU ASP LEU THR GLY SEQRES 6 2 113 ASN ARG VAL ARG TYR THR ASN TRP ASN GLU GLY GLU PRO SEQRES 7 2 113 ASN ASN VAL GLY SER GLY GLU ASN CYS VAL VAL LEU LEU SEQRES 8 2 113 THR ASN GLY LYS TRP ASN ASP VAL PRO CYS SER ASP SER SEQRES 9 2 113 PHE LEU VAL VAL CYS GLU PHE SER ASP HET GAL 1 1 12 HET CA 1 227 1 HET CA 1 2 1 HET CL 1 3 1 HET GAL 2 1 12 HET CA 2 227 1 HET CA 2 2 1 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 GAL 2(C6 H12 O6) FORMUL 4 CA 4(CA 2+) FORMUL 6 CL CL 1- FORMUL 10 HOH *286(H2 O) HELIX 1 1 LEU 1 126 LEU 1 136 1 11 HELIX 2 2 ALA 1 146 VAL 1 155 1 10 HELIX 3 3 LEU 2 126 LEU 2 136 1 11 HELIX 4 4 ALA 2 146 VAL 2 155 1 10 SHEET 1 A 2 TYR 1 116 SER 1 119 0 SHEET 2 A 2 VAL 1 221 PHE 1 224 -1 N PHE 1 224 O TYR 1 116 SHEET 1 B 2 CYS 1 200 LEU 1 203 0 SHEET 2 B 2 TRP 1 209 VAL 1 212 -1 N VAL 1 212 O CYS 1 200 SHEET 1 C 2 TYR 2 116 SER 2 119 0 SHEET 2 C 2 VAL 2 221 PHE 2 224 -1 N PHE 2 224 O TYR 2 116 SHEET 1 D 3 TRP 2 209 VAL 2 212 0 SHEET 2 D 3 CYS 2 200 LEU 2 203 -1 N VAL 2 202 O ASN 2 210 SHEET 3 D 3 ALA 2 160 THR 2 165 -1 N ILE 2 164 O VAL 2 201 SSBOND 1 CYS 1 133 CYS 1 222 1555 1555 2.03 SSBOND 2 CYS 1 200 CYS 1 214 1555 1555 2.02 SSBOND 3 CYS 2 133 CYS 2 222 1555 1555 2.03 SSBOND 4 CYS 2 200 CYS 2 214 1555 1555 2.03 LINK O1 GAL 1 1 CA CA 1 2 1555 1555 2.52 LINK O2 GAL 1 1 CA CA 1 2 1555 1555 2.58 LINK CA CA 1 2 OE1 GLU 1 190 1555 1555 2.49 LINK CA CA 1 2 OD1 ASN 1 192 1555 1555 2.48 LINK CA CA 1 2 OE1 GLU 1 198 1555 1555 2.42 LINK CA CA 1 2 OD1 ASN 1 210 1555 1555 2.53 LINK CA CA 1 2 O ASP 1 211 1555 1555 2.59 LINK CA CA 1 2 OD1 ASP 1 211 1555 1555 2.40 LINK OD1 ASP 1 166 CA CA 1 227 1555 1555 2.72 LINK OD2 ASP 1 166 CA CA 1 227 1555 1555 2.58 LINK OE2 GLU 1 170 CA CA 1 227 1555 1555 2.75 LINK OE1 GLU 1 170 CA CA 1 227 1555 1555 2.57 LINK OD1 ASN 1 193 CA CA 1 227 1555 1555 2.53 LINK O GLU 1 198 CA CA 1 227 1555 1555 2.41 LINK OD1 ASN 1 199 CA CA 1 227 1555 1555 2.39 LINK CA CA 1 227 O HOH 1 274 1555 1555 2.36 LINK O2 GAL 2 1 CA CA 2 2 1555 1555 2.50 LINK O1 GAL 2 1 CA CA 2 2 1555 1555 2.63 LINK CA CA 2 2 OE1 GLU 2 190 1555 1555 2.52 LINK CA CA 2 2 OD1 ASN 2 192 1555 1555 2.32 LINK CA CA 2 2 OE1 GLU 2 198 1555 1555 2.42 LINK CA CA 2 2 OD1 ASN 2 210 1555 1555 2.56 LINK CA CA 2 2 OD1 ASP 2 211 1555 1555 2.43 LINK CA CA 2 2 O ASP 2 211 1555 1555 2.64 LINK OD2 ASP 2 166 CA CA 2 227 1555 1555 2.52 LINK OD1 ASP 2 166 CA CA 2 227 1555 1555 2.67 LINK OE2 GLU 2 170 CA CA 2 227 1555 1555 2.72 LINK OE1 GLU 2 170 CA CA 2 227 1555 1555 2.51 LINK OD1 ASN 2 193 CA CA 2 227 1555 1555 2.54 LINK O GLU 2 198 CA CA 2 227 1555 1555 2.42 LINK OD1 ASN 2 199 CA CA 2 227 1555 1555 2.28 LINK CA CA 2 227 O HOH 2 232 1555 1555 2.34 CISPEP 1 GLU 1 190 PRO 1 191 0 0.31 CISPEP 2 GLU 2 190 PRO 2 191 0 -0.14 SITE 1 CA1 7 CA 1 227 ASP 1 166 GLU 1 170 ASN 1 193 SITE 2 CA1 7 GLU 1 198 ASN 1 199 HOH 1 274 SITE 1 CA2 7 CA 2 227 ASP 2 166 GLU 2 170 ASN 2 193 SITE 2 CA2 7 GLU 2 198 ASN 2 199 HOH 2 232 SITE 1 CA3 7 CA 1 2 GLU 1 190 ASN 1 192 GLU 1 198 SITE 2 CA3 7 ASN 1 210 ASP 1 211 GAL 1 1 SITE 1 CA4 7 CA 2 2 GLU 2 190 ASN 2 192 GLU 2 198 SITE 2 CA4 7 ASN 2 210 ASP 2 211 GAL 2 1 CRYST1 60.700 75.300 57.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017422 0.00000 MTRIX1 1 0.999847 0.015104 0.008816 -0.36690 1 MTRIX2 1 0.015249 -0.999746 -0.016597 37.55800 1 MTRIX3 1 0.008563 0.016729 -0.999823 6.56620 1