PDB Short entry for 1RGE HEADER HYDROLASE (GUANYLORIBONUCLEASE) 05-JUN-95 1RGE TITLE HYDROLASE, GUANYLORIBONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.27.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AUREOFACIENS; SOURCE 3 ORGANISM_TAXID: 1894 KEYWDS HYDROLASE (GUANYLORIBONUCLEASE) EXPDTA X-RAY DIFFRACTION AUTHOR J.SEVCIK,Z.DAUTER,V.S.LAMZIN,K.S.WILSON REVDAT 3 29-NOV-17 1RGE 1 REMARK REVDAT 2 24-FEB-09 1RGE 1 VERSN REVDAT 1 14-OCT-96 1RGE 0 JRNL AUTH J.SEVCIK,Z.DAUTER,V.S.LAMZIN,K.S.WILSON JRNL TITL RIBONUCLEASE FROM STREPTOMYCES AUREOFACIENS AT ATOMIC JRNL TITL 2 RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 52 327 1996 JRNL REFN ISSN 0907-4449 JRNL PMID 15299705 JRNL DOI 10.1107/S0907444995007669 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SEVCIK,C.P.HILL,Z.DAUTER,K.S.WILSON REMARK 1 TITL COMPLEX OF RIBONUCLEASE FROM STREPTOMYCES AUREOFACIENS WITH REMARK 1 TITL 2 2'-GMP AT 1.7A RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 49 257 1993 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.SEVCIK,I.ZEGERS,L.WYNS,Z.DAUTER,K.S.WILSON REMARK 1 TITL COMPLEX OF RIBONUCLEASE SA WITH A CYCLIC NUCLEOTIDE AND A REMARK 1 TITL 2 PROPOSED MODEL FOR THE REACTION INTERMEDIATE REMARK 1 REF EUR.J.BIOCHEM. V. 216 301 1993 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.SEVCIK,E.J.DODSON,G.G.DODSON REMARK 1 TITL DETERMINATION AND RESTRAINED LEAST-SQUARES REFINEMENT OF THE REMARK 1 TITL 2 STRUCTURES OF RIBONUCLEASE SA AND ITS COMPLEX WITH REMARK 1 TITL 3 3'-GUANYLIC ACID AT 1.8 A RESOLUTION REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 47 240 1991 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.SEVCIK,R.G.SANISHVILI,A.G.PAVLOVSKY,K.M.POLYAKOV REMARK 1 TITL COMPARISON OF ACTIVE SITES OF SOME MICROBIAL RIBONUCLEASES: REMARK 1 TITL 2 STRUCTURAL BASIS FOR GUANYLIC SPECIFICITY REMARK 1 REF TRENDS BIOCHEM.SCI. V. 15 158 1990 REMARK 1 REFN ISSN 0968-0004 REMARK 1 REFERENCE 5 REMARK 1 AUTH S.V.SHLYAPNIKOV,V.BOTH,V.A.KULIKOV,A.A.DEMENTIEV,J.SEVCIK, REMARK 1 AUTH 2 J.ZELINKA REMARK 1 TITL AMINO ACID SEQUENCE DETERMINATION OF GUANYL-SPECIFIC REMARK 1 TITL 2 RIBONUCLEASE SA FROM STREPTOMYCES AUREOFACIENS REMARK 1 REF FEBS LETT. V. 209 335 1986 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.BACOVA,E.ZELINKOVA,J.ZELINKA REMARK 1 TITL EXOCELLULAR RIBONUCLEASE FROM STREPTOMYCES AUREOFACIENS. I. REMARK 1 TITL 2 ISOLATION AND PURIFICATION REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V. 235 335 1971 REMARK 1 REFN ISSN 0006-3002 REMARK 1 REFERENCE 7 REMARK 1 AUTH E.ZELINKOVA,M.BACOVA,J.ZELINKA REMARK 1 TITL EXOCELLULAR RIBONUCLEASE FROM STREPTOMYCES AUREOFACIENS. II. REMARK 1 TITL 2 PROPERTIES AND SPECIFICITY REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V. 235 343 1971 REMARK 1 REFN ISSN 0006-3002 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-93 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.109 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 62714 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 447 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1957.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 13 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 18013 REMARK 3 NUMBER OF RESTRAINTS : 21102 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : 0.019 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.304 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.085 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.160 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.300 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 1.800 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 6.100 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: BASED ON BABINET'S PRINCIPLE REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ANISOU RECORDS CONTAIN ANISOTROPIC DISPLACEMENT PARAMETERS REMARK 3 U11 U22 U33 U23 U13 U12 (ANGSTROMS**2) MULTIPLIED BY 10000. REMARK 3 REMARK 3 ISOTROPIC EQUIVALENTS OF ANISOTROPIC TEMPERATURE FACTORS REMARK 3 ARE ALSO PRESENTED IN THIS ENTRY. REMARK 4 REMARK 4 1RGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXL-93 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ROOM TEMPERATURE, PH 6.7, AMMONIUM REMARK 280 SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.36500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.36500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 SECONDARY STRUCTURE BOUNDARIES HAVE BEEN DETERMINED USING REMARK 400 SS PROGRAM (V.S.LAMZIN, EMBL HAMBURG) AS DESCRIBED IN REMARK 400 V.S.LAMZIN,Z.DAUTER,V.O.POPOV,E.H.HARUTYUNYAN,K.S.WILSON REMARK 400 J.MOL.BIOL. (1994) V.236, 759-785. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 38 CD OE1 NE2 REMARK 480 ARG B 40 CD NE CZ NH1 NH2 REMARK 480 GLU B 41 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 64 H GLY B 66 1.25 REMARK 500 HH TYR A 86 O3P 2GP A 98 1.39 REMARK 500 HH TYR B 86 O HOH B 97 1.42 REMARK 500 OE2 GLU B 54 OH TYR B 86 1.44 REMARK 500 HE22 GLN B 32 O HOH B 220 1.54 REMARK 500 HG2 GLN A 32 O HOH A 325 1.57 REMARK 500 OE1 GLU B 41 O HOH B 313 1.77 REMARK 500 O HOH B 154 O HOH B 229 2.03 REMARK 500 OE2 GLU A 74 O HOH A 311 2.04 REMARK 500 O HOH B 133 O HOH B 177 2.08 REMARK 500 O HOH A 150 O HOH A 225 2.10 REMARK 500 OH TYR B 86 O HOH B 97 2.12 REMARK 500 O HOH A 159 O HOH B 300 2.13 REMARK 500 NE2 GLN B 32 O HOH B 220 2.14 REMARK 500 O HOH B 193 O HOH B 246 2.17 REMARK 500 OH TYR A 86 O3P 2GP A 98 2.17 REMARK 500 NH2 ARG A 40 O HOH A 272 2.17 REMARK 500 O HOH A 268 O HOH A 296 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 175 O HOH B 173 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 40 CD ARG B 40 NE 0.310 REMARK 500 ARG B 40 NE ARG B 40 CZ 0.284 REMARK 500 ARG B 40 CZ ARG B 40 NH1 0.613 REMARK 500 ARG B 40 CZ ARG B 40 NH2 0.296 REMARK 500 ARG B 65 CD ARG B 65 NE -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 74 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG B 40 CG - CD - NE ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG B 40 CD - NE - CZ ANGL. DEV. = -23.0 DEGREES REMARK 500 ARG B 40 NH1 - CZ - NH2 ANGL. DEV. = -35.0 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = -35.1 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -26.5 DEGREES REMARK 500 ARG B 63 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 65 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 TYR B 86 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 86 10.79 80.26 REMARK 500 TYR B 86 9.07 81.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 40 0.07 SIDE CHAIN REMARK 500 ARG B 40 0.40 SIDE CHAIN REMARK 500 ARG B 65 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 97 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GP A 98 DBREF 1RGE A 1 96 UNP P05798 RNSA_STRAU 1 96 DBREF 1RGE B 1 96 UNP P05798 RNSA_STRAU 1 96 SEQRES 1 A 96 ASP VAL SER GLY THR VAL CYS LEU SER ALA LEU PRO PRO SEQRES 2 A 96 GLU ALA THR ASP THR LEU ASN LEU ILE ALA SER ASP GLY SEQRES 3 A 96 PRO PHE PRO TYR SER GLN ASP GLY VAL VAL PHE GLN ASN SEQRES 4 A 96 ARG GLU SER VAL LEU PRO THR GLN SER TYR GLY TYR TYR SEQRES 5 A 96 HIS GLU TYR THR VAL ILE THR PRO GLY ALA ARG THR ARG SEQRES 6 A 96 GLY THR ARG ARG ILE ILE THR GLY GLU ALA THR GLN GLU SEQRES 7 A 96 ASP TYR TYR THR GLY ASP HIS TYR ALA THR PHE SER LEU SEQRES 8 A 96 ILE ASP GLN THR CYS SEQRES 1 B 96 ASP VAL SER GLY THR VAL CYS LEU SER ALA LEU PRO PRO SEQRES 2 B 96 GLU ALA THR ASP THR LEU ASN LEU ILE ALA SER ASP GLY SEQRES 3 B 96 PRO PHE PRO TYR SER GLN ASP GLY VAL VAL PHE GLN ASN SEQRES 4 B 96 ARG GLU SER VAL LEU PRO THR GLN SER TYR GLY TYR TYR SEQRES 5 B 96 HIS GLU TYR THR VAL ILE THR PRO GLY ALA ARG THR ARG SEQRES 6 B 96 GLY THR ARG ARG ILE ILE THR GLY GLU ALA THR GLN GLU SEQRES 7 B 96 ASP TYR TYR THR GLY ASP HIS TYR ALA THR PHE SER LEU SEQRES 8 B 96 ILE ASP GLN THR CYS HET SO4 A 97 5 HET 2GP A 98 24 HETNAM SO4 SULFATE ION HETNAM 2GP GUANOSINE-2'-MONOPHOSPHATE FORMUL 3 SO4 O4 S 2- FORMUL 4 2GP C10 H14 N5 O8 P FORMUL 5 HOH *447(H2 O) HELIX 1 H1A CYS A 7 LEU A 11 5 5 HELIX 2 H2A PRO A 12 ASP A 25 13/10 RES 12-16 AND 22-25 14 HELIX 3 H1B CYS B 7 LEU B 11 5 5 HELIX 4 H2B PRO B 12 ASP B 25 13/10 RES 12-16 AND 22-25 14 SHEET 1 S1A 6 VAL A 35 PHE A 37 0 SHEET 2 S1A 6 TYR A 52 VAL A 57 -1 SHEET 3 S1A 6 ARG A 68 GLY A 73 -1 SHEET 4 S1A 6 GLU A 78 THR A 82 -1 SHEET 5 S1A 6 PHE A 89 ASP A 93 -1 SHEET 6 S1A 6 SER A 3 LEU A 8 1 SHEET 1 S1B 6 VAL B 35 PHE B 37 0 SHEET 2 S1B 6 TYR B 52 VAL B 57 -1 SHEET 3 S1B 6 ARG B 68 GLY B 73 -1 SHEET 4 S1B 6 GLU B 78 THR B 82 -1 SHEET 5 S1B 6 PHE B 89 ASP B 93 -1 SHEET 6 S1B 6 SER B 3 LEU B 8 1 SSBOND 1 CYS A 7 CYS A 96 1555 1555 2.04 SSBOND 2 CYS B 7 CYS B 96 1555 1555 2.02 CISPEP 1 GLY A 26 PRO A 27 0 2.65 CISPEP 2 GLY B 26 PRO B 27 0 0.51 SITE 1 AC1 8 ALA A 62 ARG A 63 THR A 64 HOH A 175 SITE 2 AC1 8 HOH A 193 HOH A 219 PRO B 12 ARG B 68 SITE 1 AC2 18 PHE A 37 GLN A 38 ASN A 39 ARG A 40 SITE 2 AC2 18 GLU A 41 GLU A 54 ARG A 65 ARG A 69 SITE 3 AC2 18 HIS A 85 TYR A 86 HOH A 153 HOH A 222 SITE 4 AC2 18 HOH A 267 HOH A 272 THR B 5 VAL B 6 SITE 5 AC2 18 HOH B 133 HOH B 187 CRYST1 64.730 78.560 38.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025648 0.00000 MTRIX1 1 0.970760 0.234530 0.051160 -33.23187 1 MTRIX2 1 -0.040910 0.371640 -0.927480 21.02109 1 MTRIX3 1 -0.236530 0.898270 0.370360 19.04894 1