PDB Short entry for 1RGQ HEADER VIRAL PROTEIN, HYDROLASE 12-NOV-03 1RGQ TITLE M9A HCV PROTEASE COMPLEX WITH PENTAPEPTIDE KETO-AMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1027-1207; COMPND 5 EC: 3.4.21.98; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS4A PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 9 OF THE PEPTIDE IS NATURALLY FOUND IN HEPATITIS C VIRUS KEYWDS HEPATITIS C VIRUS PROTEASE KETO AMIDE PEPTIDE INHIBITOR, VIRAL KEYWDS 2 PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,V.S.STOLL,P.L.RICHARDSON,A.SALDIVAR,J.L.KLAUS,A.MOLLA, AUTHOR 2 W.KOHLBRENNER,W.M.KATI REVDAT 4 13-JUL-11 1RGQ 1 VERSN REVDAT 3 24-FEB-09 1RGQ 1 VERSN REVDAT 2 01-MAR-05 1RGQ 1 JRNL REVDAT 1 19-OCT-04 1RGQ 0 JRNL AUTH Y.LIU,V.S.STOLL,P.L.RICHARDSON,A.SALDIVAR,J.L.KLAUS,A.MOLLA, JRNL AUTH 2 W.KOHLBRENNER,W.M.KATI JRNL TITL HEPATITIS C NS3 PROTEASE INHIBITION BY JRNL TITL 2 PEPTIDYL-ALPHA-KETOAMIDE INHIBITORS: KINETIC MECHANISM AND JRNL TITL 3 STRUCTURE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 421 207 2004 JRNL REFN ISSN 0003-9861 JRNL PMID 14984200 JRNL DOI 10.1016/J.ABB.2003.11.013 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 6.9 REMARK 3 NUMBER OF REFLECTIONS : 16212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1113 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 18619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16212 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M N/KPO4, 2.0M NACL, 10MM MES, 15% REMARK 280 GLYCEROL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 113.19250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.35172 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.62133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 113.19250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 65.35172 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.62133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 113.19250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 65.35172 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.62133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 113.19250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 65.35172 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.62133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 113.19250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 65.35172 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.62133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 113.19250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 65.35172 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.62133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 130.70344 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.24267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 130.70344 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.24267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 130.70344 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 51.24267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 130.70344 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.24267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 130.70344 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 51.24267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 130.70344 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 51.24267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 SER A -5 REMARK 465 MET A -4 REMARK 465 THR A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLN A 0 REMARK 465 GLN A 1 REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 TYR A 9 REMARK 465 ALA A 10 REMARK 465 GLN A 11 REMARK 465 GLN A 12 REMARK 465 THR A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 465 CYS A 19 REMARK 465 ILE A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 THR A 25 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 ASP A 28 REMARK 465 LYS A 29 REMARK 465 ASN A 30 REMARK 465 GLY A 185 REMARK 465 SER A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 SER B -5 REMARK 465 MET B -4 REMARK 465 THR B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLN B 0 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 LYS D 20 REMARK 465 ILE D 38 REMARK 465 PRO D 39 REMARK 465 LYS D 40 REMARK 465 LYS D 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 142 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 92 NE2 GLN A 92 6555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 32 104.91 60.10 REMARK 500 THR A 43 -85.62 -88.52 REMARK 500 PHE A 46 -157.91 -137.09 REMARK 500 ARG A 158 -63.05 -100.31 REMARK 500 MET B 2 109.10 -54.20 REMARK 500 ALA B 4 -176.57 55.05 REMARK 500 ALA B 42 -52.91 88.52 REMARK 500 PHE B 46 -158.81 -147.14 REMARK 500 SER B 184 -86.24 -73.68 REMARK 500 LYS C 40 170.42 80.17 REMARK 500 ALA D 36 111.48 80.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 193 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 100 SG REMARK 620 2 CYS A 102 SG 87.6 REMARK 620 3 CYS A 148 SG 88.7 92.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 193 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 100 SG REMARK 620 2 CYS B 102 SG 83.3 REMARK 620 3 CYS B 148 SG 97.0 99.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKP B 194 DBREF 1RGQ A 4 184 UNP P27958 POLG_HCVH 1026 1206 DBREF 1RGQ B 4 184 UNP P27958 POLG_HCVH 1026 1206 DBREF 1RGQ C 21 39 UNP O39914 O39914_9HEPC 6 24 DBREF 1RGQ D 21 39 UNP O39914 O39914_9HEPC 6 24 SEQADV 1RGQ MET A -7 UNP P27958 EXPRESSION TAG SEQADV 1RGQ ALA A -6 UNP P27958 EXPRESSION TAG SEQADV 1RGQ SER A -5 UNP P27958 EXPRESSION TAG SEQADV 1RGQ MET A -4 UNP P27958 EXPRESSION TAG SEQADV 1RGQ THR A -3 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLY A -2 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLY A -1 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLN A 0 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLN A 1 UNP P27958 EXPRESSION TAG SEQADV 1RGQ MET A 2 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLY A 3 UNP P27958 EXPRESSION TAG SEQADV 1RGQ THR A 167 UNP P27958 ALA 1190 CONFLICT SEQADV 1RGQ GLY A 185 UNP P27958 EXPRESSION TAG SEQADV 1RGQ SER A 186 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS A 187 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS A 188 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS A 189 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS A 190 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS A 191 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS A 192 UNP P27958 EXPRESSION TAG SEQADV 1RGQ MET B -7 UNP P27958 EXPRESSION TAG SEQADV 1RGQ ALA B -6 UNP P27958 EXPRESSION TAG SEQADV 1RGQ SER B -5 UNP P27958 EXPRESSION TAG SEQADV 1RGQ MET B -4 UNP P27958 EXPRESSION TAG SEQADV 1RGQ THR B -3 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLY B -2 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLY B -1 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLN B 0 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLN B 1 UNP P27958 EXPRESSION TAG SEQADV 1RGQ MET B 2 UNP P27958 EXPRESSION TAG SEQADV 1RGQ GLY B 3 UNP P27958 EXPRESSION TAG SEQADV 1RGQ THR B 167 UNP P27958 ALA 1190 CONFLICT SEQADV 1RGQ GLY B 185 UNP P27958 EXPRESSION TAG SEQADV 1RGQ SER B 186 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS B 187 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS B 188 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS B 189 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS B 190 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS B 191 UNP P27958 EXPRESSION TAG SEQADV 1RGQ HIS B 192 UNP P27958 EXPRESSION TAG SEQRES 1 A 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO SEQRES 2 A 200 ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY SEQRES 3 A 200 CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN SEQRES 4 A 200 VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN SEQRES 5 A 200 THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR SEQRES 6 A 200 VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO SEQRES 7 A 200 LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN SEQRES 8 A 200 ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER SEQRES 9 A 200 LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU SEQRES 10 A 200 VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG SEQRES 11 A 200 GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SEQRES 12 A 200 SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU CYS SEQRES 13 A 200 PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL SEQRES 14 A 200 CYS THR ARG GLY VAL THR LYS ALA VAL ASP PHE ILE PRO SEQRES 15 A 200 VAL GLU ASN LEU GLU THR THR MET ARG SER GLY SER HIS SEQRES 16 A 200 HIS HIS HIS HIS HIS SEQRES 1 B 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO SEQRES 2 B 200 ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY SEQRES 3 B 200 CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN SEQRES 4 B 200 VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN SEQRES 5 B 200 THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR SEQRES 6 B 200 VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO SEQRES 7 B 200 LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN SEQRES 8 B 200 ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER SEQRES 9 B 200 LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU SEQRES 10 B 200 VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG SEQRES 11 B 200 GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SEQRES 12 B 200 SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU CYS SEQRES 13 B 200 PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL SEQRES 14 B 200 CYS THR ARG GLY VAL THR LYS ALA VAL ASP PHE ILE PRO SEQRES 15 B 200 VAL GLU ASN LEU GLU THR THR MET ARG SER GLY SER HIS SEQRES 16 B 200 HIS HIS HIS HIS HIS SEQRES 1 C 22 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SER SEQRES 2 C 22 GLY LYS PRO ALA ILE ILE PRO LYS LYS SEQRES 1 D 22 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SER SEQRES 2 D 22 GLY LYS PRO ALA ILE ILE PRO LYS LYS HET ZN A 193 1 HET ZN B 193 1 HET AKP B 194 62 HETNAM ZN ZINC ION HETNAM AKP N-(PYRAZIN-2-YLCARBONYL)LEUCYLISOLEUCYL-N~1~-{1-[2-({1- HETNAM 2 AKP CARBOXY-2-[4-(PHOSPHONOOXY)PHENYL]ETHYL}AMINO)-1,1- HETNAM 3 AKP DIHYDROXY-2-OXOETHYL]BUT-3-ENYL}-3- HETNAM 4 AKP CYCLOHEXYLALANINAMIDE FORMUL 5 ZN 2(ZN 2+) FORMUL 7 AKP C41 H60 N7 O13 P HELIX 1 1 TYR A 59 GLY A 63 1 5 HELIX 2 2 SER A 136 LYS A 139 5 4 HELIX 3 3 VAL A 175 SER A 184 1 10 HELIX 4 4 GLY B 15 GLY B 26 1 12 HELIX 5 5 TYR B 59 GLY B 63 1 5 HELIX 6 6 ILE B 135 LYS B 139 1 5 HELIX 7 7 VAL B 175 GLY B 185 1 11 SHEET 1 A 7 THR A 66 ILE A 67 0 SHEET 2 A 7 SER D 22 VAL D 30 1 O VAL D 23 N THR A 66 SHEET 3 A 7 VAL A 36 SER A 40 -1 N VAL A 36 O ILE D 29 SHEET 4 A 7 THR A 45 ILE A 51 -1 O ALA A 48 N GLN A 37 SHEET 5 A 7 VAL A 54 VAL A 58 -1 O TRP A 56 N THR A 49 SHEET 6 A 7 LEU A 85 PRO A 89 -1 O TRP A 88 N CYS A 55 SHEET 7 A 7 TYR A 78 ASN A 80 -1 N ASN A 80 O LEU A 85 SHEET 1 B 3 THR A 66 ILE A 67 0 SHEET 2 B 3 SER D 22 VAL D 30 1 O VAL D 23 N THR A 66 SHEET 3 B 3 ALA C 36 ILE C 37 -1 N ALA C 36 O VAL D 30 SHEET 1 C 7 ASP A 106 VAL A 110 0 SHEET 2 C 7 VAL A 116 ARG A 121 -1 O VAL A 119 N LEU A 107 SHEET 3 C 7 ARG A 126 PRO A 134 -1 O SER A 128 N ARG A 120 SHEET 4 C 7 VAL A 166 PRO A 174 -1 O THR A 167 N ARG A 133 SHEET 5 C 7 ALA A 153 THR A 163 -1 N ALA A 159 O ASP A 171 SHEET 6 C 7 PRO A 145 LEU A 147 -1 N LEU A 146 O VAL A 154 SHEET 7 C 7 ASP A 106 VAL A 110 -1 N TYR A 108 O LEU A 147 SHEET 1 D 7 TYR B 9 GLN B 12 0 SHEET 2 D 7 VAL C 24 VAL C 30 -1 O ARG C 28 N GLN B 11 SHEET 3 D 7 VAL B 36 SER B 40 -1 N VAL B 36 O ILE C 29 SHEET 4 D 7 THR B 45 ILE B 51 -1 O ALA B 48 N GLN B 37 SHEET 5 D 7 VAL B 54 VAL B 58 -1 O TRP B 56 N THR B 49 SHEET 6 D 7 LEU B 85 PRO B 89 -1 O TRP B 88 N CYS B 55 SHEET 7 D 7 TYR B 78 ASN B 80 -1 N ASN B 80 O LEU B 85 SHEET 1 E 2 ILE B 67 SER B 69 0 SHEET 2 E 2 GLY B 72 VAL B 74 -1 O VAL B 74 N ILE B 67 SHEET 1 F 7 ASP B 106 VAL B 110 0 SHEET 2 F 7 VAL B 116 ARG B 121 -1 O VAL B 119 N LEU B 107 SHEET 3 F 7 ARG B 126 PRO B 134 -1 O SER B 128 N ARG B 120 SHEET 4 F 7 VAL B 166 PRO B 174 -1 O THR B 167 N ARG B 133 SHEET 5 F 7 ALA B 153 THR B 163 -1 N ALA B 159 O ASP B 171 SHEET 6 F 7 PRO B 145 LEU B 147 -1 N LEU B 146 O VAL B 154 SHEET 7 F 7 ASP B 106 VAL B 110 -1 N TYR B 108 O LEU B 147 LINK SG CYS A 100 ZN ZN A 193 1555 1555 2.56 LINK SG CYS A 102 ZN ZN A 193 1555 1555 2.64 LINK SG CYS A 148 ZN ZN A 193 1555 1555 2.59 LINK SG CYS B 100 ZN ZN B 193 1555 1555 2.43 LINK SG CYS B 102 ZN ZN B 193 1555 1555 2.60 LINK SG CYS B 148 ZN ZN B 193 1555 1555 2.53 LINK CB SER B 142 O15 AKP B 194 1555 1555 1.42 SITE 1 AC1 4 CYS A 100 THR A 101 CYS A 102 CYS A 148 SITE 1 AC2 3 CYS B 100 CYS B 102 CYS B 148 SITE 1 AC3 14 GLN B 44 THR B 45 HIS B 60 ILE B 135 SITE 2 AC3 14 LEU B 138 LYS B 139 GLY B 140 SER B 141 SITE 3 AC3 14 SER B 142 ARG B 158 ALA B 159 ALA B 160 SITE 4 AC3 14 VAL B 161 CYS B 162 CRYST1 226.385 226.385 76.864 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004417 0.002550 0.000000 0.00000 SCALE2 0.000000 0.005101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013010 0.00000