PDB Short entry for 1RJJ HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-NOV-03 1RJJ TITLE SOLUTION STRUCTURE OF A HOMODIMERIC HYPOTHETICAL PROTEIN, AT5G22580, A TITLE 2 STRUCTURAL GENOMICS TARGET FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXPRESSED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)/PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BETA BARREL, HOMODIMER, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.CORNILESCU,C.C.CORNILESCU,Q.ZHAO,R.O.FREDERICK,F.C.PETERSON,S.THAO, AUTHOR 2 J.L.MARKLEY,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 02-MAR-22 1RJJ 1 REMARK REVDAT 6 24-FEB-09 1RJJ 1 VERSN REVDAT 5 12-FEB-08 1RJJ 1 REMARK REVDAT 4 01-FEB-05 1RJJ 1 AUTHOR KEYWDS REMARK REVDAT 3 29-JUN-04 1RJJ 1 JRNL REVDAT 2 23-DEC-03 1RJJ 1 REMARK REVDAT 1 09-DEC-03 1RJJ 0 JRNL AUTH G.CORNILESCU,C.C.CORNILESCU,Q.ZHAO,R.O.FREDERICK, JRNL AUTH 2 F.C.PETERSON,S.THAO,J.L.MARKLEY JRNL TITL SOLUTION STRUCTURE OF A HOMODIMERIC HYPOTHETICAL PROTEIN, JRNL TITL 2 AT5G22580, A STRUCTURAL GENOMICS TARGET FROM ARABIDOPSIS JRNL TITL 3 THALIANA. JRNL REF J.BIOMOL.NMR V. 29 387 2004 JRNL REFN ISSN 0925-2738 JRNL PMID 15213437 JRNL DOI 10.1023/B:JNMR.0000032525.70677.16 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, VNMR, XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RJJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020805. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ; 600 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, PIPP, NMRPIPE, XPLOR REMARK 210 -NIH REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 PRO A 111 O REMARK 470 PRO B 111 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 31 H ILE A 34 1.40 REMARK 500 O VAL B 31 H ILE B 34 1.40 REMARK 500 O GLY B 26 H LEU B 30 1.43 REMARK 500 O GLY A 26 H LEU A 30 1.43 REMARK 500 O THR B 87 H ILE B 90 1.44 REMARK 500 O THR A 87 H ILE A 90 1.44 REMARK 500 O HIS A 49 H ARG A 53 1.53 REMARK 500 O HIS B 49 H ARG B 53 1.53 REMARK 500 O LYS A 104 H SER A 106 1.53 REMARK 500 O LYS B 104 H SER B 106 1.53 REMARK 500 O LEU B 27 H VAL B 31 1.55 REMARK 500 O LEU A 27 H VAL A 31 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 -100.50 -139.64 REMARK 500 1 ASP A 17 64.82 153.83 REMARK 500 1 THR A 18 105.20 -50.93 REMARK 500 1 VAL A 37 21.44 37.83 REMARK 500 1 LYS A 46 80.82 -68.50 REMARK 500 1 GLU A 47 54.66 -96.91 REMARK 500 1 SER A 48 -138.10 -134.14 REMARK 500 1 GLN A 54 -4.00 55.90 REMARK 500 1 PHE A 56 -128.02 -59.26 REMARK 500 1 THR A 57 -36.13 -164.99 REMARK 500 1 ASN A 66 -174.57 -173.75 REMARK 500 1 SER A 75 12.37 -66.81 REMARK 500 1 ALA A 102 74.74 -56.46 REMARK 500 1 VAL A 103 -26.22 -148.36 REMARK 500 1 LYS A 104 -28.26 -38.45 REMARK 500 1 SER A 105 70.72 -57.69 REMARK 500 1 VAL A 107 30.18 -91.73 REMARK 500 1 SER B 4 -100.51 -139.47 REMARK 500 1 ASP B 17 64.68 153.75 REMARK 500 1 THR B 18 105.19 -50.73 REMARK 500 1 VAL B 37 21.38 37.93 REMARK 500 1 LYS B 46 80.89 -68.59 REMARK 500 1 GLU B 47 54.56 -96.95 REMARK 500 1 SER B 48 -138.22 -134.14 REMARK 500 1 GLN B 54 -4.06 55.87 REMARK 500 1 PHE B 56 -128.08 -58.92 REMARK 500 1 THR B 57 -36.25 -164.90 REMARK 500 1 ASN B 66 -174.40 -173.57 REMARK 500 1 SER B 75 12.34 -66.66 REMARK 500 1 ALA B 102 74.74 -56.39 REMARK 500 1 VAL B 103 -26.15 -148.33 REMARK 500 1 LYS B 104 -28.13 -38.60 REMARK 500 1 SER B 105 70.69 -57.77 REMARK 500 1 VAL B 107 30.29 -91.76 REMARK 500 2 ALA A 2 110.68 -38.25 REMARK 500 2 THR A 3 -49.07 -147.64 REMARK 500 2 SER A 4 -103.76 -124.05 REMARK 500 2 ASP A 17 62.51 155.24 REMARK 500 2 THR A 18 105.20 -49.04 REMARK 500 2 ASP A 35 -9.43 -58.91 REMARK 500 2 VAL A 37 45.09 30.26 REMARK 500 2 LYS A 46 81.17 -65.50 REMARK 500 2 SER A 48 73.34 -158.49 REMARK 500 2 HIS A 49 125.12 54.34 REMARK 500 2 GLN A 54 13.71 49.21 REMARK 500 2 PRO A 77 -7.54 -43.78 REMARK 500 2 ALA A 88 -26.57 -38.85 REMARK 500 2 ALA A 102 76.05 -58.88 REMARK 500 2 VAL A 107 51.62 -177.19 REMARK 500 2 VAL A 108 43.42 -168.06 REMARK 500 REMARK 500 THIS ENTRY HAS 651 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8972 RELATED DB: BMRB REMARK 900 RELATED ID: 1Q53 RELATED DB: PDB REMARK 900 RELATED ID: 1IUJ RELATED DB: PDB REMARK 900 RELATED ID: 1LQ9 RELATED DB: PDB REMARK 900 RELATED ID: GO.22997 RELATED DB: TARGETDB DBREF 1RJJ A 1 111 UNP Q9FK81 Q9FK81_ARATH 1 111 DBREF 1RJJ B 1 111 UNP Q9FK81 Q9FK81_ARATH 1 111 SEQRES 1 A 111 MET ALA THR SER GLY PHE LYS HIS LEU VAL VAL VAL LYS SEQRES 2 A 111 PHE LYS GLU ASP THR LYS VAL ASP GLU ILE LEU LYS GLY SEQRES 3 A 111 LEU GLU ASN LEU VAL SER GLN ILE ASP THR VAL LYS SER SEQRES 4 A 111 PHE GLU TRP GLY GLU ASP LYS GLU SER HIS ASP MET LEU SEQRES 5 A 111 ARG GLN GLY PHE THR HIS ALA PHE SER MET THR PHE GLU SEQRES 6 A 111 ASN LYS ASP GLY TYR VAL ALA PHE THR SER HIS PRO LEU SEQRES 7 A 111 HIS VAL GLU PHE SER ALA ALA PHE THR ALA VAL ILE ASP SEQRES 8 A 111 LYS ILE VAL LEU LEU ASP PHE PRO VAL ALA ALA VAL LYS SEQRES 9 A 111 SER SER VAL VAL ALA THR PRO SEQRES 1 B 111 MET ALA THR SER GLY PHE LYS HIS LEU VAL VAL VAL LYS SEQRES 2 B 111 PHE LYS GLU ASP THR LYS VAL ASP GLU ILE LEU LYS GLY SEQRES 3 B 111 LEU GLU ASN LEU VAL SER GLN ILE ASP THR VAL LYS SER SEQRES 4 B 111 PHE GLU TRP GLY GLU ASP LYS GLU SER HIS ASP MET LEU SEQRES 5 B 111 ARG GLN GLY PHE THR HIS ALA PHE SER MET THR PHE GLU SEQRES 6 B 111 ASN LYS ASP GLY TYR VAL ALA PHE THR SER HIS PRO LEU SEQRES 7 B 111 HIS VAL GLU PHE SER ALA ALA PHE THR ALA VAL ILE ASP SEQRES 8 B 111 LYS ILE VAL LEU LEU ASP PHE PRO VAL ALA ALA VAL LYS SEQRES 9 B 111 SER SER VAL VAL ALA THR PRO HELIX 1 1 LYS A 19 SER A 32 1 14 HELIX 2 2 GLN A 33 VAL A 37 5 5 HELIX 3 3 ASN A 66 SER A 75 1 10 HELIX 4 4 HIS A 76 VAL A 89 1 14 HELIX 5 5 LYS B 19 SER B 32 1 14 HELIX 6 6 GLN B 33 VAL B 37 5 5 HELIX 7 7 ASN B 66 SER B 75 1 10 HELIX 8 8 HIS B 76 VAL B 89 1 14 SHEET 1 A 4 SER A 39 ASP A 45 0 SHEET 2 A 4 HIS A 58 PHE A 64 -1 O ALA A 59 N GLU A 44 SHEET 3 A 4 GLY A 5 LYS A 13 -1 N HIS A 8 O MET A 62 SHEET 4 A 4 LYS A 92 VAL A 100 -1 O VAL A 100 N GLY A 5 SHEET 1 B 4 SER B 39 ASP B 45 0 SHEET 2 B 4 HIS B 58 PHE B 64 -1 O ALA B 59 N GLU B 44 SHEET 3 B 4 GLY B 5 LYS B 13 -1 N HIS B 8 O MET B 62 SHEET 4 B 4 LYS B 92 VAL B 100 -1 O VAL B 100 N GLY B 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000