PDB Short entry for 1RYH HEADER HYDROLASE 22-DEC-03 1RYH TITLE ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B, A SELF-ACTIVATING GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 ISOFORM RAC1B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-201; COMPND 5 SYNONYM: RAC1B; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS GTP BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.AHMADIAN,D.FIEGEN REVDAT 5 25-OCT-23 1RYH 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1RYH 1 VERSN REVDAT 3 24-FEB-09 1RYH 1 VERSN REVDAT 2 10-FEB-04 1RYH 1 JRNL REVDAT 1 27-JAN-04 1RYH 0 JRNL AUTH D.FIEGEN,L.C.HAEUSLER,L.BLUMENSTEIN,U.HERBRAND,R.DVORSKY, JRNL AUTH 2 I.R.VETTER,M.R.AHMADIAN JRNL TITL ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B, A JRNL TITL 2 SELF-ACTIVATING GTPASE JRNL REF J.BIOL.CHEM. V. 279 4743 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14625275 JRNL DOI 10.1074/JBC.M310281200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2808 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2701 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2477 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3688 ; 1.883 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5792 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2890 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 491 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2729 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1504 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.006 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.335 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1690 ; 1.152 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2740 ; 1.906 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1011 ; 2.816 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 4.294 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1150 62.7740 41.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0389 REMARK 3 T33: 0.0467 T12: -0.0271 REMARK 3 T13: -0.0361 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.8440 L22: 2.5482 REMARK 3 L33: 2.2449 L12: 1.0991 REMARK 3 L13: -1.4199 L23: -0.3561 REMARK 3 S TENSOR REMARK 3 S11: -0.1704 S12: 0.3823 S13: 0.1943 REMARK 3 S21: -0.1373 S22: 0.2029 S23: 0.0167 REMARK 3 S31: 0.0432 S32: -0.1982 S33: -0.0325 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1790 62.9690 7.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.0238 REMARK 3 T33: 0.0767 T12: -0.0102 REMARK 3 T13: -0.0085 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.6487 L22: 1.8857 REMARK 3 L33: 1.8088 L12: -0.1039 REMARK 3 L13: -0.9571 L23: -0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: -0.2584 S13: 0.2035 REMARK 3 S21: 0.1488 S22: 0.0188 S23: 0.0165 REMARK 3 S31: -0.0099 S32: 0.0830 S33: -0.0557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1RYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 26.261 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1MH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.33500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.33500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 ASP A 63 REMARK 465 TYR A 64 REMARK 465 ASP A 65 REMARK 465 ARG A 66 REMARK 465 LEU A 67 REMARK 465 ARG A 68 REMARK 465 PRO A 69 REMARK 465 LEU A 70 REMARK 465 SER A 71 REMARK 465 TYR A 72 REMARK 465 PRO A 73 REMARK 465 GLN A 74 REMARK 465 THR A 75 REMARK 465 VAL A 76 REMARK 465 GLY A 77 REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 TYR A 80 REMARK 465 GLY A 81 REMARK 465 LYS A 82 REMARK 465 ASP A 83 REMARK 465 ILE A 84 REMARK 465 THR A 85 REMARK 465 SER A 86 REMARK 465 ARG A 87 REMARK 465 GLY A 88 REMARK 465 LYS A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 91 REMARK 465 PRO A 92 REMARK 465 ALA B 59 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 ASP B 63 REMARK 465 TYR B 64 REMARK 465 ASP B 65 REMARK 465 ARG B 66 REMARK 465 LEU B 67 REMARK 465 ARG B 68 REMARK 465 PRO B 69 REMARK 465 LEU B 70 REMARK 465 SER B 71 REMARK 465 TYR B 72 REMARK 465 PRO B 73 REMARK 465 GLN B 74 REMARK 465 THR B 75 REMARK 465 VAL B 76 REMARK 465 GLY B 77 REMARK 465 GLU B 78 REMARK 465 THR B 79 REMARK 465 TYR B 80 REMARK 465 GLY B 81 REMARK 465 LYS B 82 REMARK 465 ASP B 83 REMARK 465 ILE B 84 REMARK 465 THR B 85 REMARK 465 SER B 86 REMARK 465 ARG B 87 REMARK 465 GLY B 88 REMARK 465 LYS B 89 REMARK 465 ASP B 90 REMARK 465 LYS B 91 REMARK 465 PRO B 92 REMARK 465 PRO B 200 REMARK 465 VAL B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 TYR A 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 36 CG1 CG2 REMARK 470 ILE A 93 CG1 CG2 CD1 REMARK 470 LYS A 151 CD CE NZ REMARK 470 VAL A 201 CG1 CG2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 VAL B 36 CG1 CG2 REMARK 470 ILE B 93 CG1 CG2 CD1 REMARK 470 PRO B 199 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 140 O HOH A 662 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 143 CG ASP A 143 OD1 0.146 REMARK 500 VAL A 171 CB VAL A 171 CG2 -0.137 REMARK 500 VAL B 14 CB VAL B 14 CG2 -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 95 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 140 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 140 CB - CG - OD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 182 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 47 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 182 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 182 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2A 93.89 79.92 REMARK 500 THR A 35 8.52 -58.91 REMARK 500 LYS A 115 -57.78 -124.39 REMARK 500 LYS B 115 -55.61 -123.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 539 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 GNP A 538 O2B 93.7 REMARK 620 3 GNP A 538 O2G 170.0 96.2 REMARK 620 4 HOH A 540 O 81.7 172.0 88.7 REMARK 620 5 HOH A 609 O 86.6 97.2 90.7 89.1 REMARK 620 6 HOH A 625 O 89.9 87.7 92.0 85.8 174.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1539 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 GNP B1538 O2B 91.4 REMARK 620 3 GNP B1538 O2G 175.6 92.5 REMARK 620 4 HOH B1540 O 86.4 173.9 89.6 REMARK 620 5 HOH B1541 O 89.7 86.9 88.4 87.4 REMARK 620 6 HOH B1612 O 86.2 97.6 95.3 87.9 174.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 539 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1539 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 538 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1538 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RYF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GUANOSINE-5'-DIPHOSPHATE DBREF 1RYH A 1 201 UNP P63000 RAC1_HUMAN 1 201 DBREF 1RYH B 1 201 UNP P63000 RAC1_HUMAN 1 201 SEQADV 1RYH GLY A 1A UNP P63000 CLONING ARTIFACT SEQADV 1RYH SER A 2A UNP P63000 CLONING ARTIFACT SEQADV 1RYH GLY B 1A UNP P63000 CLONING ARTIFACT SEQADV 1RYH SER B 2A UNP P63000 CLONING ARTIFACT SEQRES 1 A 203 GLY SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP SEQRES 2 A 203 GLY ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR SEQRES 3 A 203 THR ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE SEQRES 4 A 203 ASP ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO SEQRES 5 A 203 VAL ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 A 203 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR VAL SEQRES 7 A 203 GLY GLU THR TYR GLY LYS ASP ILE THR SER ARG GLY LYS SEQRES 8 A 203 ASP LYS PRO ILE ALA ASP VAL PHE LEU ILE CYS PHE SER SEQRES 9 A 203 LEU VAL SER PRO ALA SER PHE GLU ASN VAL ARG ALA LYS SEQRES 10 A 203 TRP TYR PRO GLU VAL ARG HIS HIS CYS PRO ASN THR PRO SEQRES 11 A 203 ILE ILE LEU VAL GLY THR LYS LEU ASP LEU ARG ASP ASP SEQRES 12 A 203 LYS ASP THR ILE GLU LYS LEU LYS GLU LYS LYS LEU THR SEQRES 13 A 203 PRO ILE THR TYR PRO GLN GLY LEU ALA MET ALA LYS GLU SEQRES 14 A 203 ILE GLY ALA VAL LYS TYR LEU GLU CYS SER ALA LEU THR SEQRES 15 A 203 GLN ARG GLY LEU LYS THR VAL PHE ASP GLU ALA ILE ARG SEQRES 16 A 203 ALA VAL LEU CYS PRO PRO PRO VAL SEQRES 1 B 203 GLY SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP SEQRES 2 B 203 GLY ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR SEQRES 3 B 203 THR ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE SEQRES 4 B 203 ASP ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO SEQRES 5 B 203 VAL ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 B 203 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR VAL SEQRES 7 B 203 GLY GLU THR TYR GLY LYS ASP ILE THR SER ARG GLY LYS SEQRES 8 B 203 ASP LYS PRO ILE ALA ASP VAL PHE LEU ILE CYS PHE SER SEQRES 9 B 203 LEU VAL SER PRO ALA SER PHE GLU ASN VAL ARG ALA LYS SEQRES 10 B 203 TRP TYR PRO GLU VAL ARG HIS HIS CYS PRO ASN THR PRO SEQRES 11 B 203 ILE ILE LEU VAL GLY THR LYS LEU ASP LEU ARG ASP ASP SEQRES 12 B 203 LYS ASP THR ILE GLU LYS LEU LYS GLU LYS LYS LEU THR SEQRES 13 B 203 PRO ILE THR TYR PRO GLN GLY LEU ALA MET ALA LYS GLU SEQRES 14 B 203 ILE GLY ALA VAL LYS TYR LEU GLU CYS SER ALA LEU THR SEQRES 15 B 203 GLN ARG GLY LEU LYS THR VAL PHE ASP GLU ALA ILE ARG SEQRES 16 B 203 ALA VAL LEU CYS PRO PRO PRO VAL HET MG A 539 1 HET GNP A 538 32 HET MG B1539 1 HET GNP B1538 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 4 GNP 2(C10 H17 N6 O13 P3) FORMUL 7 HOH *296(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 SER A 105 LYS A 115 1 11 HELIX 3 3 LYS A 115 CYS A 124 1 10 HELIX 4 4 LYS A 135 ASP A 140 1 6 HELIX 5 5 ASP A 141 GLU A 150 1 10 HELIX 6 6 THR A 157 GLY A 169 1 13 HELIX 7 7 GLY A 183 CYS A 197 1 15 HELIX 8 8 GLY B 15 ASN B 26 1 12 HELIX 9 9 SER B 105 LYS B 115 1 11 HELIX 10 10 LYS B 115 CYS B 124 1 10 HELIX 11 11 LYS B 135 ASP B 140 1 6 HELIX 12 12 ASP B 141 LYS B 151 1 11 HELIX 13 13 THR B 157 GLY B 169 1 13 HELIX 14 14 GLY B 183 CYS B 197 1 15 SHEET 1 A 6 ASN A 39 VAL A 46 0 SHEET 2 A 6 LYS A 49 TRP A 56 -1 O LEU A 53 N ALA A 42 SHEET 3 A 6 SER A 2A GLY A 10 1 N CYS A 6 O TRP A 56 SHEET 4 A 6 SER B 2A GLY B 10 -1 O MET B 1 N MET A 1 SHEET 5 A 6 LYS B 49 TRP B 56 1 O GLY B 54 N CYS B 6 SHEET 6 A 6 ASN B 39 VAL B 46 -1 N TYR B 40 O LEU B 55 SHEET 1 B 8 LYS A 172 GLU A 175 0 SHEET 2 B 8 ILE A 129 THR A 134 1 N LEU A 131 O LYS A 172 SHEET 3 B 8 VAL A 96 SER A 102 1 N PHE A 101 O THR A 134 SHEET 4 B 8 SER A 2A GLY A 10 1 N VAL A 9 O CYS A 100 SHEET 5 B 8 SER B 2A GLY B 10 -1 O MET B 1 N MET A 1 SHEET 6 B 8 VAL B 96 SER B 102 1 O CYS B 100 N VAL B 9 SHEET 7 B 8 ILE B 129 THR B 134 1 O THR B 134 N PHE B 101 SHEET 8 B 8 LYS B 172 GLU B 175 1 O LEU B 174 N GLY B 133 LINK OG1 THR A 17 MG MG A 539 1555 1555 2.09 LINK O2B GNP A 538 MG MG A 539 1555 1555 1.98 LINK O2G GNP A 538 MG MG A 539 1555 1555 2.12 LINK MG MG A 539 O HOH A 540 1555 1555 2.23 LINK MG MG A 539 O HOH A 609 1555 1555 2.02 LINK MG MG A 539 O HOH A 625 1555 1555 2.11 LINK OG1 THR B 17 MG MG B1539 1555 1555 2.04 LINK O2B GNP B1538 MG MG B1539 1555 1555 2.05 LINK O2G GNP B1538 MG MG B1539 1555 1555 2.05 LINK MG MG B1539 O HOH B1540 1555 1555 2.17 LINK MG MG B1539 O HOH B1541 1555 1555 2.15 LINK MG MG B1539 O HOH B1612 1555 1555 2.07 CISPEP 1 GLY A 1A SER A 2A 0 6.59 SITE 1 AC1 5 THR A 17 GNP A 538 HOH A 540 HOH A 609 SITE 2 AC1 5 HOH A 625 SITE 1 AC2 5 THR B 17 GNP B1538 HOH B1540 HOH B1541 SITE 2 AC2 5 HOH B1612 SITE 1 AC3 25 GLY A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC3 25 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC3 25 GLY A 60 LYS A 135 ASP A 137 LEU A 138 SITE 4 AC3 25 SER A 177 ALA A 178 LEU A 179 MG A 539 SITE 5 AC3 25 HOH A 540 HOH A 541 HOH A 600 HOH A 601 SITE 6 AC3 25 HOH A 606 HOH A 609 HOH A 625 HOH A 640 SITE 7 AC3 25 HOH B1690 SITE 1 AC4 25 GLY B 12 ALA B 13 VAL B 14 GLY B 15 SITE 2 AC4 25 LYS B 16 THR B 17 CYS B 18 PHE B 28 SITE 3 AC4 25 LYS B 135 ASP B 137 LEU B 138 SER B 177 SITE 4 AC4 25 ALA B 178 LEU B 179 MG B1539 HOH B1540 SITE 5 AC4 25 HOH B1541 HOH B1550 HOH B1612 HOH B1614 SITE 6 AC4 25 HOH B1652 HOH B1663 HOH B1682 HOH B1683 SITE 7 AC4 25 HOH B1687 CRYST1 51.550 78.670 96.880 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010322 0.00000