PDB Short entry for 1RZT HEADER TRANSFERASE/DNA 29-DEC-03 1RZT TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE LAMBDA COMPLEXED WITH A TWO TITLE 2 NUCLEOTIDE GAP DNA MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3'; COMPND 3 CHAIN: B, F, J, N; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: TEMPLATE DNA; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*TP*GP*CP*G)-3'; COMPND 8 CHAIN: C, G, K, O; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: UPSTREAM PRIMER DNA; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(P*GP*CP*CP*G)-3'; COMPND 13 CHAIN: D, H, L, P; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: DOWNSTREAM PRIMER DNA; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 18 CHAIN: A, E, I, M; COMPND 19 FRAGMENT: CATALYTIC DOMAIN OF POLYMERASE LAMBDA; COMPND 20 SYNONYM: POL LAMBDA, DNA POLYMERASE KAPPA, DNA POLYMERASE BETA-2, POL COMPND 21 BETA2; COMPND 22 EC: 2.7.7.7; COMPND 23 ENGINEERED: YES; COMPND 24 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: POLL; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS DNA POLYMERASE LAMBDA, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,M.GARCIA-DIAZ,K.BEBENEK,J.M.KRAHN,L.BLANCO,T.A.KUNKEL REVDAT 4 03-APR-24 1RZT 1 REMARK LINK REVDAT 3 11-OCT-17 1RZT 1 REMARK REVDAT 2 24-FEB-09 1RZT 1 VERSN REVDAT 1 02-MAR-04 1RZT 0 JRNL AUTH M.GARCIA-DIAZ,K.BEBENEK,J.M.KRAHN,L.BLANCO,T.A.KUNKEL, JRNL AUTH 2 L.C.PEDERSEN JRNL TITL A STRUCTURAL SOLUTION FOR THE DNA POLYMERASE JRNL TITL 2 LAMBDA-DEPENDENT REPAIR OF DNA GAPS WITH MINIMAL HOMOLOGY. JRNL REF MOL.CELL V. 13 561 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 14992725 JRNL DOI 10.1016/S1097-2765(04)00061-9 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 557836.420 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 108665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2701 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 13587 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 359 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10191 REMARK 3 NUCLEIC ACID ATOMS : 1624 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 1026 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : -2.74000 REMARK 3 B33 (A**2) : 4.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.980 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 40.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : COMBINE.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: POLYMERASE BETA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CACODYLATE, SODIUM ACETATE, PEG8000, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 95.66050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.51700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 95.66050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.51700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, O, P, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 SER E 245 REMARK 465 SER E 246 REMARK 465 GLN E 247 REMARK 465 LYS E 248 REMARK 465 ALA E 249 REMARK 465 SER I 245 REMARK 465 SER I 246 REMARK 465 GLN I 247 REMARK 465 LYS I 248 REMARK 465 ALA I 249 REMARK 465 SER M 245 REMARK 465 SER M 246 REMARK 465 GLN M 247 REMARK 465 LYS M 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS E 307 CG CD CE NZ REMARK 470 ARG E 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 330 CG CD OE1 OE2 REMARK 470 GLN E 453 CG CD OE1 NE2 REMARK 470 LYS E 544 CG CD CE NZ REMARK 470 VAL E 545 CG1 CG2 REMARK 470 THR I 250 OG1 CG2 REMARK 470 LYS I 307 CG CD CE NZ REMARK 470 GLU I 318 CG CD OE1 OE2 REMARK 470 ARG I 323 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 330 CG CD OE1 OE2 REMARK 470 LYS I 401 CG CD CE NZ REMARK 470 ARG I 438 CG CD NE CZ NH1 NH2 REMARK 470 ASN I 539 CG OD1 ND2 REMARK 470 LYS I 544 CG CD CE NZ REMARK 470 VAL I 545 CG1 CG2 REMARK 470 ARG M 438 CG CD NE CZ NH1 NH2 REMARK 470 LYS M 544 CG CD CE NZ REMARK 470 VAL M 545 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.086 REMARK 500 DG H 1 P DG H 1 OP3 -0.086 REMARK 500 DG L 1 P DG L 1 OP3 -0.087 REMARK 500 DG P 1 P DG P 1 OP3 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 435 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -133.90 -106.61 REMARK 500 ARG E 364 7.31 -65.22 REMARK 500 SER E 365 -23.02 -143.04 REMARK 500 CYS E 415 -136.44 -110.20 REMARK 500 LYS E 422 151.33 -49.79 REMARK 500 ARG E 438 -36.98 -138.08 REMARK 500 SER E 439 -4.21 -59.01 REMARK 500 ILE E 443 -43.70 -135.02 REMARK 500 ALA E 535 152.87 -47.89 REMARK 500 ILE I 256 -62.86 -94.47 REMARK 500 HIS I 290 6.63 -61.94 REMARK 500 SER I 319 -4.23 -161.02 REMARK 500 ARG I 323 -42.89 -25.35 REMARK 500 CYS I 415 -137.41 -106.06 REMARK 500 ASP I 427 -174.44 -173.51 REMARK 500 ARG I 438 -29.59 -140.69 REMARK 500 GLU I 454 0.73 -69.27 REMARK 500 ALA I 531 -177.74 -173.43 REMARK 500 ASN I 539 -122.01 -74.22 REMARK 500 THR M 250 103.69 84.39 REMARK 500 CYS M 415 -135.78 -107.18 REMARK 500 SER M 439 2.30 -69.54 REMARK 500 HIS M 541 6.54 -68.64 REMARK 500 LYS M 544 103.79 -45.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG D 1 0.06 SIDE CHAIN REMARK 500 DG H 1 0.07 SIDE CHAIN REMARK 500 DC P 2 0.07 SIDE CHAIN REMARK 500 DC P 3 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B2009 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1013 O REMARK 620 2 HOH B1014 O 80.5 REMARK 620 3 HOH B1015 O 121.2 92.1 REMARK 620 4 HOH B1016 O 147.3 82.3 87.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 5 OP1 REMARK 620 2 HOH C 52 O 89.4 REMARK 620 3 SER A 339 O 171.8 83.3 REMARK 620 4 ILE A 341 O 91.6 177.4 95.9 REMARK 620 5 ALA A 344 O 94.1 93.8 89.9 83.7 REMARK 620 6 HOH A2092 O 88.6 90.6 88.0 91.9 174.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F2007 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F1008 O REMARK 620 2 HOH F1009 O 102.0 REMARK 620 3 HOH F1010 O 93.4 92.5 REMARK 620 4 HOH F1011 O 167.7 87.7 93.6 REMARK 620 5 HOH F1012 O 87.7 169.9 89.7 82.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E2002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG G 5 OP1 REMARK 620 2 HOH G 359 O 79.6 REMARK 620 3 HOH G 360 O 83.7 91.3 REMARK 620 4 SER E 339 O 161.2 93.3 79.1 REMARK 620 5 ILE E 341 O 97.1 93.8 174.9 100.7 REMARK 620 6 ALA E 344 O 91.0 169.0 82.1 94.0 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA J2010 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH J1017 O REMARK 620 2 HOH J1018 O 85.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA J2011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH J1019 O REMARK 620 2 HOH J1020 O 87.6 REMARK 620 3 HOH J1021 O 82.3 83.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I2003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG K 5 OP1 REMARK 620 2 HOH K 407 O 85.4 REMARK 620 3 HOH K 578 O 83.0 90.9 REMARK 620 4 SER I 339 O 167.7 83.7 91.5 REMARK 620 5 ILE I 341 O 95.4 178.7 88.2 95.4 REMARK 620 6 ALA I 344 O 91.4 91.1 173.8 94.4 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M2005 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG O 5 OP1 REMARK 620 2 HOH O 6 O 91.0 REMARK 620 3 HOH O 7 O 82.7 90.0 REMARK 620 4 SER M 339 O 170.1 82.0 90.3 REMARK 620 5 ILE M 341 O 95.3 173.2 93.5 92.1 REMARK 620 6 ALA M 344 O 99.2 91.1 177.8 88.0 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M2006 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC P 3 OP1 REMARK 620 2 HOH P 468 O 83.1 REMARK 620 3 CYS M 300 O 157.5 81.2 REMARK 620 4 ILE M 302 O 90.7 161.9 99.3 REMARK 620 5 ILE M 305 O 99.6 106.1 100.2 91.6 REMARK 620 6 HOH M2930 O 85.9 76.1 74.7 86.5 174.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA I 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA M 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA M 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA F 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA J 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA J 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO M 2801 DBREF 1RZT A 245 575 UNP Q9UGP5 DPOL_HUMAN 245 575 DBREF 1RZT E 245 575 UNP Q9UGP5 DPOL_HUMAN 245 575 DBREF 1RZT I 245 575 UNP Q9UGP5 DPOL_HUMAN 245 575 DBREF 1RZT M 245 575 UNP Q9UGP5 DPOL_HUMAN 245 575 DBREF 1RZT B 1 11 PDB 1RZT 1RZT 1 11 DBREF 1RZT C 1 5 PDB 1RZT 1RZT 1 5 DBREF 1RZT D 1 4 PDB 1RZT 1RZT 1 4 DBREF 1RZT F 1 11 PDB 1RZT 1RZT 1 11 DBREF 1RZT G 1 5 PDB 1RZT 1RZT 1 5 DBREF 1RZT H 1 4 PDB 1RZT 1RZT 1 4 DBREF 1RZT J 1 11 PDB 1RZT 1RZT 1 11 DBREF 1RZT K 1 5 PDB 1RZT 1RZT 1 5 DBREF 1RZT L 1 4 PDB 1RZT 1RZT 1 4 DBREF 1RZT N 1 11 PDB 1RZT 1RZT 1 11 DBREF 1RZT O 1 5 PDB 1RZT 1RZT 1 5 DBREF 1RZT P 1 4 PDB 1RZT 1RZT 1 4 SEQRES 1 B 11 DC DG DG DC DA DA DC DG DC DA DC SEQRES 1 C 5 DG DT DG DC DG SEQRES 1 D 4 DG DC DC DG SEQRES 1 F 11 DC DG DG DC DA DA DC DG DC DA DC SEQRES 1 G 5 DG DT DG DC DG SEQRES 1 H 4 DG DC DC DG SEQRES 1 J 11 DC DG DG DC DA DA DC DG DC DA DC SEQRES 1 K 5 DG DT DG DC DG SEQRES 1 L 4 DG DC DC DG SEQRES 1 N 11 DC DG DG DC DA DA DC DG DC DA DC SEQRES 1 O 5 DG DT DG DC DG SEQRES 1 P 4 DG DC DC DG SEQRES 1 A 331 SER SER GLN LYS ALA THR ASN HIS ASN LEU HIS ILE THR SEQRES 2 A 331 GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SER VAL GLN SEQRES 3 A 331 GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA LYS ALA ILE SEQRES 4 A 331 ASN ALA LEU LYS SER PHE HIS LYS PRO VAL THR SER TYR SEQRES 5 A 331 GLN GLU ALA CYS SER ILE PRO GLY ILE GLY LYS ARG MET SEQRES 6 A 331 ALA GLU LYS ILE ILE GLU ILE LEU GLU SER GLY HIS LEU SEQRES 7 A 331 ARG LYS LEU ASP HIS ILE SER GLU SER VAL PRO VAL LEU SEQRES 8 A 331 GLU LEU PHE SER ASN ILE TRP GLY ALA GLY THR LYS THR SEQRES 9 A 331 ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SER LEU GLU SEQRES 10 A 331 ASP ILE ARG SER GLN ALA SER LEU THR THR GLN GLN ALA SEQRES 11 A 331 ILE GLY LEU LYS HIS TYR SER ASP PHE LEU GLU ARG MET SEQRES 12 A 331 PRO ARG GLU GLU ALA THR GLU ILE GLU GLN THR VAL GLN SEQRES 13 A 331 LYS ALA ALA GLN ALA PHE ASN SER GLY LEU LEU CYS VAL SEQRES 14 A 331 ALA CYS GLY SER TYR ARG ARG GLY LYS ALA THR CYS GLY SEQRES 15 A 331 ASP VAL ASP VAL LEU ILE THR HIS PRO ASP GLY ARG SER SEQRES 16 A 331 HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SER LEU ARG SEQRES 17 A 331 GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SER GLN GLU SEQRES 18 A 331 GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY VAL CYS ARG SEQRES 19 A 331 LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE SEQRES 20 A 331 ILE VAL VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU SEQRES 21 A 331 TYR PHE THR GLY SER ALA HIS PHE ASN ARG SER MET ARG SEQRES 22 A 331 ALA LEU ALA LYS THR LYS GLY MET SER LEU SER GLU HIS SEQRES 23 A 331 ALA LEU SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS SEQRES 24 A 331 LYS VAL GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU SEQRES 25 A 331 LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU SEQRES 26 A 331 PRO ALA GLU ARG ASP TRP SEQRES 1 E 331 SER SER GLN LYS ALA THR ASN HIS ASN LEU HIS ILE THR SEQRES 2 E 331 GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SER VAL GLN SEQRES 3 E 331 GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA LYS ALA ILE SEQRES 4 E 331 ASN ALA LEU LYS SER PHE HIS LYS PRO VAL THR SER TYR SEQRES 5 E 331 GLN GLU ALA CYS SER ILE PRO GLY ILE GLY LYS ARG MET SEQRES 6 E 331 ALA GLU LYS ILE ILE GLU ILE LEU GLU SER GLY HIS LEU SEQRES 7 E 331 ARG LYS LEU ASP HIS ILE SER GLU SER VAL PRO VAL LEU SEQRES 8 E 331 GLU LEU PHE SER ASN ILE TRP GLY ALA GLY THR LYS THR SEQRES 9 E 331 ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SER LEU GLU SEQRES 10 E 331 ASP ILE ARG SER GLN ALA SER LEU THR THR GLN GLN ALA SEQRES 11 E 331 ILE GLY LEU LYS HIS TYR SER ASP PHE LEU GLU ARG MET SEQRES 12 E 331 PRO ARG GLU GLU ALA THR GLU ILE GLU GLN THR VAL GLN SEQRES 13 E 331 LYS ALA ALA GLN ALA PHE ASN SER GLY LEU LEU CYS VAL SEQRES 14 E 331 ALA CYS GLY SER TYR ARG ARG GLY LYS ALA THR CYS GLY SEQRES 15 E 331 ASP VAL ASP VAL LEU ILE THR HIS PRO ASP GLY ARG SER SEQRES 16 E 331 HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SER LEU ARG SEQRES 17 E 331 GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SER GLN GLU SEQRES 18 E 331 GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY VAL CYS ARG SEQRES 19 E 331 LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE SEQRES 20 E 331 ILE VAL VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU SEQRES 21 E 331 TYR PHE THR GLY SER ALA HIS PHE ASN ARG SER MET ARG SEQRES 22 E 331 ALA LEU ALA LYS THR LYS GLY MET SER LEU SER GLU HIS SEQRES 23 E 331 ALA LEU SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS SEQRES 24 E 331 LYS VAL GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU SEQRES 25 E 331 LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU SEQRES 26 E 331 PRO ALA GLU ARG ASP TRP SEQRES 1 I 331 SER SER GLN LYS ALA THR ASN HIS ASN LEU HIS ILE THR SEQRES 2 I 331 GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SER VAL GLN SEQRES 3 I 331 GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA LYS ALA ILE SEQRES 4 I 331 ASN ALA LEU LYS SER PHE HIS LYS PRO VAL THR SER TYR SEQRES 5 I 331 GLN GLU ALA CYS SER ILE PRO GLY ILE GLY LYS ARG MET SEQRES 6 I 331 ALA GLU LYS ILE ILE GLU ILE LEU GLU SER GLY HIS LEU SEQRES 7 I 331 ARG LYS LEU ASP HIS ILE SER GLU SER VAL PRO VAL LEU SEQRES 8 I 331 GLU LEU PHE SER ASN ILE TRP GLY ALA GLY THR LYS THR SEQRES 9 I 331 ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SER LEU GLU SEQRES 10 I 331 ASP ILE ARG SER GLN ALA SER LEU THR THR GLN GLN ALA SEQRES 11 I 331 ILE GLY LEU LYS HIS TYR SER ASP PHE LEU GLU ARG MET SEQRES 12 I 331 PRO ARG GLU GLU ALA THR GLU ILE GLU GLN THR VAL GLN SEQRES 13 I 331 LYS ALA ALA GLN ALA PHE ASN SER GLY LEU LEU CYS VAL SEQRES 14 I 331 ALA CYS GLY SER TYR ARG ARG GLY LYS ALA THR CYS GLY SEQRES 15 I 331 ASP VAL ASP VAL LEU ILE THR HIS PRO ASP GLY ARG SER SEQRES 16 I 331 HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SER LEU ARG SEQRES 17 I 331 GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SER GLN GLU SEQRES 18 I 331 GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY VAL CYS ARG SEQRES 19 I 331 LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE SEQRES 20 I 331 ILE VAL VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU SEQRES 21 I 331 TYR PHE THR GLY SER ALA HIS PHE ASN ARG SER MET ARG SEQRES 22 I 331 ALA LEU ALA LYS THR LYS GLY MET SER LEU SER GLU HIS SEQRES 23 I 331 ALA LEU SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS SEQRES 24 I 331 LYS VAL GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU SEQRES 25 I 331 LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU SEQRES 26 I 331 PRO ALA GLU ARG ASP TRP SEQRES 1 M 331 SER SER GLN LYS ALA THR ASN HIS ASN LEU HIS ILE THR SEQRES 2 M 331 GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SER VAL GLN SEQRES 3 M 331 GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA LYS ALA ILE SEQRES 4 M 331 ASN ALA LEU LYS SER PHE HIS LYS PRO VAL THR SER TYR SEQRES 5 M 331 GLN GLU ALA CYS SER ILE PRO GLY ILE GLY LYS ARG MET SEQRES 6 M 331 ALA GLU LYS ILE ILE GLU ILE LEU GLU SER GLY HIS LEU SEQRES 7 M 331 ARG LYS LEU ASP HIS ILE SER GLU SER VAL PRO VAL LEU SEQRES 8 M 331 GLU LEU PHE SER ASN ILE TRP GLY ALA GLY THR LYS THR SEQRES 9 M 331 ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SER LEU GLU SEQRES 10 M 331 ASP ILE ARG SER GLN ALA SER LEU THR THR GLN GLN ALA SEQRES 11 M 331 ILE GLY LEU LYS HIS TYR SER ASP PHE LEU GLU ARG MET SEQRES 12 M 331 PRO ARG GLU GLU ALA THR GLU ILE GLU GLN THR VAL GLN SEQRES 13 M 331 LYS ALA ALA GLN ALA PHE ASN SER GLY LEU LEU CYS VAL SEQRES 14 M 331 ALA CYS GLY SER TYR ARG ARG GLY LYS ALA THR CYS GLY SEQRES 15 M 331 ASP VAL ASP VAL LEU ILE THR HIS PRO ASP GLY ARG SER SEQRES 16 M 331 HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SER LEU ARG SEQRES 17 M 331 GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SER GLN GLU SEQRES 18 M 331 GLU ASN GLY GLN GLN GLN LYS TYR LEU GLY VAL CYS ARG SEQRES 19 M 331 LEU PRO GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE SEQRES 20 M 331 ILE VAL VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU SEQRES 21 M 331 TYR PHE THR GLY SER ALA HIS PHE ASN ARG SER MET ARG SEQRES 22 M 331 ALA LEU ALA LYS THR LYS GLY MET SER LEU SER GLU HIS SEQRES 23 M 331 ALA LEU SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS SEQRES 24 M 331 LYS VAL GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU SEQRES 25 M 331 LYS ASP VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU SEQRES 26 M 331 PRO ALA GLU ARG ASP TRP HET NA B2009 1 HET NA F2007 1 HET NA J2010 1 HET NA J2011 1 HET NA A2001 1 HET NA A2008 1 HET NA E2002 1 HET NA I2003 1 HET NA M2005 1 HET NA M2006 1 HET EDO M2801 4 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 17 NA 10(NA 1+) FORMUL 27 EDO C2 H6 O2 FORMUL 28 HOH *1026(H2 O) HELIX 1 1 ASN A 253 GLN A 270 1 18 HELIX 2 2 ASP A 272 SER A 288 1 17 HELIX 3 3 SER A 295 ILE A 302 1 8 HELIX 4 4 GLY A 306 GLY A 320 1 15 HELIX 5 5 LEU A 322 ILE A 328 5 7 HELIX 6 6 SER A 331 ASN A 340 1 10 HELIX 7 7 GLY A 345 GLN A 355 1 11 HELIX 8 8 SER A 359 ALA A 367 1 9 HELIX 9 9 THR A 370 HIS A 379 1 10 HELIX 10 10 HIS A 379 GLU A 385 1 7 HELIX 11 11 ARG A 389 ALA A 405 1 17 HELIX 12 12 CYS A 415 ARG A 420 1 6 HELIX 13 13 ILE A 443 GLU A 454 1 12 HELIX 14 14 PRO A 495 SER A 497 5 3 HELIX 15 15 GLU A 498 GLY A 508 1 11 HELIX 16 16 SER A 509 LYS A 523 1 15 HELIX 17 17 THR A 555 LEU A 563 1 9 HELIX 18 18 GLU A 569 ARG A 573 5 5 HELIX 19 19 ASN E 253 GLY E 271 1 19 HELIX 20 20 ASP E 272 SER E 288 1 17 HELIX 21 21 SER E 295 SER E 301 1 7 HELIX 22 22 GLY E 306 GLY E 320 1 15 HELIX 23 23 LEU E 322 ILE E 328 5 7 HELIX 24 24 SER E 331 ASN E 340 1 10 HELIX 25 25 GLY E 345 GLY E 356 1 12 HELIX 26 26 SER E 359 ALA E 367 1 9 HELIX 27 27 THR E 370 HIS E 379 1 10 HELIX 28 28 HIS E 379 GLU E 385 1 7 HELIX 29 29 ARG E 389 ALA E 405 1 17 HELIX 30 30 CYS E 415 ARG E 420 1 6 HELIX 31 31 ILE E 443 GLN E 453 1 11 HELIX 32 32 PRO E 495 SER E 497 5 3 HELIX 33 33 GLU E 498 GLY E 508 1 11 HELIX 34 34 SER E 509 LYS E 523 1 15 HELIX 35 35 THR E 555 GLY E 564 1 10 HELIX 36 36 GLU E 569 ARG E 573 5 5 HELIX 37 37 ASN I 253 GLN I 270 1 18 HELIX 38 38 ASP I 272 SER I 288 1 17 HELIX 39 39 SER I 295 ILE I 302 1 8 HELIX 40 40 GLY I 306 GLU I 318 1 13 HELIX 41 41 LEU I 322 ASP I 326 5 5 HELIX 42 42 SER I 331 ASN I 340 1 10 HELIX 43 43 GLY I 345 GLN I 355 1 11 HELIX 44 44 SER I 359 ALA I 367 1 9 HELIX 45 45 THR I 370 HIS I 379 1 10 HELIX 46 46 HIS I 379 GLU I 385 1 7 HELIX 47 47 ARG I 389 ALA I 405 1 17 HELIX 48 48 CYS I 415 ARG I 420 1 6 HELIX 49 49 GLY I 442 ARG I 452 1 11 HELIX 50 50 PRO I 495 SER I 497 5 3 HELIX 51 51 GLU I 498 GLY I 508 1 11 HELIX 52 52 SER I 509 LYS I 523 1 15 HELIX 53 53 THR I 555 LEU I 563 1 9 HELIX 54 54 GLU I 569 ARG I 573 5 5 HELIX 55 55 ASN M 253 GLN M 270 1 18 HELIX 56 56 ASP M 272 PHE M 289 1 18 HELIX 57 57 SER M 295 SER M 301 1 7 HELIX 58 58 GLY M 306 GLY M 320 1 15 HELIX 59 59 LEU M 322 HIS M 327 5 6 HELIX 60 60 SER M 331 ASN M 340 1 10 HELIX 61 61 GLY M 345 GLN M 355 1 11 HELIX 62 62 SER M 359 ALA M 367 1 9 HELIX 63 63 THR M 370 HIS M 379 1 10 HELIX 64 64 HIS M 379 GLU M 385 1 7 HELIX 65 65 ARG M 389 ALA M 405 1 17 HELIX 66 66 CYS M 415 ARG M 420 1 6 HELIX 67 67 ILE M 443 GLU M 454 1 12 HELIX 68 68 PRO M 495 SER M 497 5 3 HELIX 69 69 GLU M 498 GLY M 508 1 11 HELIX 70 70 SER M 509 LYS M 523 1 15 HELIX 71 71 THR M 555 LEU M 563 1 9 HELIX 72 72 GLU M 569 ARG M 573 5 5 SHEET 1 A 2 MET A 387 PRO A 388 0 SHEET 2 A 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 B 5 LEU A 411 ALA A 414 0 SHEET 2 B 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 B 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 B 5 GLN A 470 CYS A 477 -1 N TYR A 473 O ILE A 491 SHEET 5 B 5 LEU A 457 ASN A 467 -1 N ASP A 459 O VAL A 476 SHEET 1 C 2 MET A 525 LEU A 527 0 SHEET 2 C 2 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 1 D 2 VAL A 537 ARG A 538 0 SHEET 2 D 2 LYS A 544 GLY A 546 -1 O GLY A 546 N VAL A 537 SHEET 1 E 2 MET E 387 PRO E 388 0 SHEET 2 E 2 THR E 424 CYS E 425 -1 O CYS E 425 N MET E 387 SHEET 1 F 5 LEU E 411 ALA E 414 0 SHEET 2 F 5 VAL E 428 THR E 433 -1 O LEU E 431 N VAL E 413 SHEET 3 F 5 ARG E 487 VAL E 493 1 O ILE E 492 N ILE E 432 SHEET 4 F 5 GLN E 470 CYS E 477 -1 N CYS E 477 O ARG E 487 SHEET 5 F 5 LEU E 457 ASN E 467 -1 N ASP E 459 O VAL E 476 SHEET 1 G 2 MET E 525 LEU E 527 0 SHEET 2 G 2 LEU E 532 THR E 534 -1 O SER E 533 N SER E 526 SHEET 1 H 2 MET I 387 PRO I 388 0 SHEET 2 H 2 THR I 424 CYS I 425 -1 O CYS I 425 N MET I 387 SHEET 1 I 5 LEU I 411 ALA I 414 0 SHEET 2 I 5 VAL I 428 THR I 433 -1 O LEU I 431 N VAL I 413 SHEET 3 I 5 ARG I 487 VAL I 493 1 O ILE I 492 N ILE I 432 SHEET 4 I 5 GLN I 470 CYS I 477 -1 N GLY I 475 O LEU I 489 SHEET 5 I 5 LEU I 457 ASN I 467 -1 N ASP I 459 O VAL I 476 SHEET 1 J 3 MET I 525 LEU I 527 0 SHEET 2 J 3 LEU I 532 THR I 534 -1 O SER I 533 N SER I 526 SHEET 3 J 3 VAL I 550 LEU I 551 -1 O LEU I 551 N LEU I 532 SHEET 1 K 2 VAL I 537 ARG I 538 0 SHEET 2 K 2 LYS I 544 GLY I 546 -1 O GLY I 546 N VAL I 537 SHEET 1 L 2 MET M 387 PRO M 388 0 SHEET 2 L 2 THR M 424 CYS M 425 -1 O CYS M 425 N MET M 387 SHEET 1 M 5 LEU M 411 ALA M 414 0 SHEET 2 M 5 VAL M 428 THR M 433 -1 O LEU M 431 N VAL M 413 SHEET 3 M 5 ARG M 487 VAL M 493 1 O ILE M 492 N ILE M 432 SHEET 4 M 5 GLN M 470 CYS M 477 -1 N CYS M 477 O ARG M 487 SHEET 5 M 5 LEU M 457 ASN M 467 -1 N GLU M 465 O LYS M 472 SHEET 1 N 3 MET M 525 LEU M 527 0 SHEET 2 N 3 LEU M 532 THR M 534 -1 O SER M 533 N SER M 526 SHEET 3 N 3 VAL M 550 LEU M 551 -1 O LEU M 551 N LEU M 532 SHEET 1 O 2 VAL M 537 ARG M 538 0 SHEET 2 O 2 LYS M 544 GLY M 546 -1 O GLY M 546 N VAL M 537 SSBOND 1 CYS A 543 CYS M 543 1555 1555 2.03 LINK O HOH B1013 NA NA B2009 1555 1555 2.02 LINK O HOH B1014 NA NA B2009 1555 1555 2.16 LINK O HOH B1015 NA NA B2009 1555 1555 2.01 LINK O HOH B1016 NA NA B2009 1555 1555 1.90 LINK OP1 DG C 5 NA NA A2001 1555 1555 2.50 LINK O HOH C 52 NA NA A2001 1555 1555 2.56 LINK O HOH F1008 NA NA F2007 1555 1555 1.86 LINK O HOH F1009 NA NA F2007 1555 1555 1.89 LINK O HOH F1010 NA NA F2007 1555 1555 1.90 LINK O HOH F1011 NA NA F2007 1555 1555 1.98 LINK O HOH F1012 NA NA F2007 1555 1555 2.01 LINK OP1 DG G 5 NA NA E2002 1555 1555 2.60 LINK O HOH G 359 NA NA E2002 1555 1555 2.58 LINK O HOH G 360 NA NA E2002 1555 1555 2.82 LINK O HOH J1017 NA NA J2010 1555 1555 2.07 LINK O HOH J1018 NA NA J2010 1555 1555 2.01 LINK O HOH J1019 NA NA J2011 1555 1555 2.02 LINK O HOH J1020 NA NA J2011 1555 1555 2.05 LINK O HOH J1021 NA NA J2011 1555 1555 2.05 LINK OP1 DG K 5 NA NA I2003 1555 1555 2.50 LINK O HOH K 407 NA NA I2003 1555 1555 2.26 LINK O HOH K 578 NA NA I2003 1555 1555 2.18 LINK OP1 DG O 5 NA NA M2005 1555 1555 2.35 LINK O HOH O 6 NA NA M2005 1555 1555 2.51 LINK O HOH O 7 NA NA M2005 1555 1555 2.42 LINK OP1 DC P 3 NA NA M2006 1555 1555 2.71 LINK O HOH P 468 NA NA M2006 1555 1555 2.39 LINK O SER A 339 NA NA A2001 1555 1555 2.33 LINK O ILE A 341 NA NA A2001 1555 1555 2.67 LINK O ALA A 344 NA NA A2001 1555 1555 2.42 LINK NA NA A2001 O HOH A2092 1555 1555 2.14 LINK O SER E 339 NA NA E2002 1555 1555 2.20 LINK O ILE E 341 NA NA E2002 1555 1555 2.64 LINK O ALA E 344 NA NA E2002 1555 1555 2.34 LINK O SER I 339 NA NA I2003 1555 1555 2.29 LINK O ILE I 341 NA NA I2003 1555 1555 2.56 LINK O ALA I 344 NA NA I2003 1555 1555 2.35 LINK O CYS M 300 NA NA M2006 1555 1555 2.66 LINK O ILE M 302 NA NA M2006 1555 1555 2.56 LINK O ILE M 305 NA NA M2006 1555 1555 2.21 LINK O SER M 339 NA NA M2005 1555 1555 2.46 LINK O ILE M 341 NA NA M2005 1555 1555 2.64 LINK O ALA M 344 NA NA M2005 1555 1555 2.51 LINK NA NA M2006 O HOH M2930 1555 1555 2.20 CISPEP 1 GLY A 508 SER A 509 0 0.65 CISPEP 2 GLY E 508 SER E 509 0 0.98 CISPEP 3 GLY I 508 SER I 509 0 0.55 CISPEP 4 GLY M 508 SER M 509 0 1.40 SITE 1 AC1 6 SER A 339 ILE A 341 ALA A 344 HOH A2092 SITE 2 AC1 6 DG C 5 HOH C 52 SITE 1 AC2 6 SER E 339 ILE E 341 ALA E 344 DG G 5 SITE 2 AC2 6 HOH G 359 HOH G 360 SITE 1 AC3 6 SER I 339 ILE I 341 ALA I 344 DG K 5 SITE 2 AC3 6 HOH K 407 HOH K 578 SITE 1 AC4 6 SER M 339 ILE M 341 ALA M 344 DG O 5 SITE 2 AC4 6 HOH O 6 HOH O 7 SITE 1 AC5 6 CYS M 300 ILE M 302 ILE M 305 HOH M2930 SITE 2 AC5 6 DC P 3 HOH P 468 SITE 1 AC6 5 HOH F1008 HOH F1009 HOH F1010 HOH F1011 SITE 2 AC6 5 HOH F1012 SITE 1 AC7 2 TYR A 267 GLN A 270 SITE 1 AC8 4 HOH B1013 HOH B1014 HOH B1015 HOH B1016 SITE 1 AC9 2 HOH J1017 HOH J1018 SITE 1 BC1 3 HOH J1019 HOH J1020 HOH J1021 SITE 1 BC2 2 HOH E2111 GLN M 350 CRYST1 191.321 99.034 104.838 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009539 0.00000