PDB Short entry for 1S1Q HEADER TRANSLATION,PROTEIN TURNOVER 07-JAN-04 1S1Q TITLE TSG101(UEV) DOMAIN IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR SUSCEPTIBILITY GENE 101 PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: TSG101(UEV) DOMAIN; COMPND 5 SYNONYM: TSG101(UEV); TUMOR SUSCEPTIBILITY PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBIQUITIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: UBIQUITIN AND RIBOSOMAL PROTEIN S27A PRECURSOR; UBIQUITIN COMPND 11 CARBOXYL EXTENSION PROTEIN 80; 40S RIBOSOMAL PROTEIN S27A; UBIQUITIN- COMPND 12 CEP80; HUBCEP80; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HETERODIMER, TRANSLATION, PROTEIN TURNOVER EXPDTA X-RAY DIFFRACTION AUTHOR W.I.SUNDQUIST,H.L.SCHUBERT,B.N.KELLY,G.C.HILL,J.M.HOLTON,C.P.HILL REVDAT 4 23-AUG-23 1S1Q 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1S1Q 1 VERSN REVDAT 2 24-FEB-09 1S1Q 1 VERSN REVDAT 1 04-MAY-04 1S1Q 0 JRNL AUTH W.I.SUNDQUIST,H.L.SCHUBERT,B.N.KELLY,G.C.HILL,J.M.HOLTON, JRNL AUTH 2 C.P.HILL JRNL TITL UBIQUITIN RECOGNITION BY THE HUMAN TSG101 PROTEIN JRNL REF MOL.CELL V. 13 783 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15053872 JRNL DOI 10.1016/S1097-2765(04)00129-7 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 40921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.295 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3538 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3251 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4803 ; 1.357 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7625 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 6.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3773 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 624 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3548 ; 0.235 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2157 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.037 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2150 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3531 ; 1.422 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 2.201 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1272 ; 3.480 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 72.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD & MOLECULAR REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KPP & 1UBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.81700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.57700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.81700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.57700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL HETERODIMER IS FORMED FROM MOLECULES AB OR REMARK 300 CD. TWO DIMERS IN THE ASU. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 144 REMARK 465 PRO A 145 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 VAL C 3 REMARK 465 SER C 143 REMARK 465 ARG C 144 REMARK 465 PRO C 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 9102 O HOH B 9048 1.87 REMARK 500 O HOH C 9033 O HOH C 9036 2.05 REMARK 500 OG SER C 4 O HOH C 9127 2.11 REMARK 500 O HOH D 9005 O HOH D 9026 2.11 REMARK 500 O HOH A 9025 O HOH A 9063 2.16 REMARK 500 OE1 GLU C 5 O HOH C 9137 2.18 REMARK 500 OE1 GLU D 24 O HOH D 9037 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 9085 O HOH D 9023 4657 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 53 SE MSE A 53 CE -0.520 REMARK 500 MSE C 11 SE MSE C 11 CE -0.365 REMARK 500 MSE C 53 SE MSE C 53 CE -0.590 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 46 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP D 39 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP D 58 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 127.98 72.06 REMARK 500 LYS A 118 117.11 -160.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A9002 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 GLU A 138 OE2 104.5 REMARK 620 3 HOH A9023 O 163.1 84.5 REMARK 620 4 GLU B 34 OE1 83.4 171.6 88.7 REMARK 620 5 HOH B9015 O 102.5 94.6 90.8 80.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B9003 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 115 NE2 REMARK 620 2 HOH A9109 O 109.2 REMARK 620 3 ASP B 32 OD1 105.9 98.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C9001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 102 NE2 REMARK 620 2 GLU C 138 OE2 98.7 REMARK 620 3 HOH C9042 O 167.3 94.0 REMARK 620 4 HOH C9086 O 89.1 91.5 91.7 REMARK 620 5 GLU D 34 OE1 94.6 166.0 72.8 93.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D9004 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 115 NE2 REMARK 620 2 ASP D 32 OD1 102.2 REMARK 620 3 HOH D9005 O 77.4 177.2 REMARK 620 4 HOH D9060 O 93.6 99.9 82.9 REMARK 620 5 HOH D9061 O 99.0 72.8 104.5 166.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KPP RELATED DB: PDB REMARK 900 APO-TSG101(UEV) DOMAIN REMARK 900 RELATED ID: 1KPQ RELATED DB: PDB REMARK 900 APO-TSG101(UEV) DOMAIN REMARK 900 RELATED ID: 1M4P RELATED DB: PDB REMARK 900 PTAP-PEPTIDE BOUND TSG101(UEV) DOMAIN REMARK 900 RELATED ID: 1M4Q RELATED DB: PDB REMARK 900 PTAP-PEPTIDE BOUND TSG101(UEV) DOMAIN DBREF 1S1Q A 1 145 UNP Q99816 TS101_HUMAN 1 145 DBREF 1S1Q B 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 1S1Q C 1 145 UNP Q99816 TS101_HUMAN 1 145 DBREF 1S1Q D 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQADV 1S1Q MSE A 1 UNP Q99816 MET 1 MODIFIED RESIDUE SEQADV 1S1Q MSE A 11 UNP Q99816 MET 11 MODIFIED RESIDUE SEQADV 1S1Q MSE A 53 UNP Q99816 MET 53 MODIFIED RESIDUE SEQADV 1S1Q MSE A 95 UNP Q99816 MET 95 MODIFIED RESIDUE SEQADV 1S1Q MSE A 131 UNP Q99816 MET 131 MODIFIED RESIDUE SEQADV 1S1Q MSE C 1 UNP Q99816 MET 1 MODIFIED RESIDUE SEQADV 1S1Q MSE C 11 UNP Q99816 MET 11 MODIFIED RESIDUE SEQADV 1S1Q MSE C 53 UNP Q99816 MET 53 MODIFIED RESIDUE SEQADV 1S1Q MSE C 95 UNP Q99816 MET 95 MODIFIED RESIDUE SEQADV 1S1Q MSE C 131 UNP Q99816 MET 131 MODIFIED RESIDUE SEQADV 1S1Q MSE B 1 UNP P62988 MET 1 MODIFIED RESIDUE SEQADV 1S1Q MSE D 1 UNP P62988 MET 1 MODIFIED RESIDUE SEQRES 1 A 145 MSE ALA VAL SER GLU SER GLN LEU LYS LYS MSE VAL SER SEQRES 2 A 145 LYS TYR LYS TYR ARG ASP LEU THR VAL ARG GLU THR VAL SEQRES 3 A 145 ASN VAL ILE THR LEU TYR LYS ASP LEU LYS PRO VAL LEU SEQRES 4 A 145 ASP SER TYR VAL PHE ASN ASP GLY SER SER ARG GLU LEU SEQRES 5 A 145 MSE ASN LEU THR GLY THR ILE PRO VAL PRO TYR ARG GLY SEQRES 6 A 145 ASN THR TYR ASN ILE PRO ILE CYS LEU TRP LEU LEU ASP SEQRES 7 A 145 THR TYR PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS PRO SEQRES 8 A 145 THR SER SER MSE THR ILE LYS THR GLY LYS HIS VAL ASP SEQRES 9 A 145 ALA ASN GLY LYS ILE TYR LEU PRO TYR LEU HIS GLU TRP SEQRES 10 A 145 LYS HIS PRO GLN SER ASP LEU LEU GLY LEU ILE GLN VAL SEQRES 11 A 145 MSE ILE VAL VAL PHE GLY ASP GLU PRO PRO VAL PHE SER SEQRES 12 A 145 ARG PRO SEQRES 1 B 76 MSE GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 145 MSE ALA VAL SER GLU SER GLN LEU LYS LYS MSE VAL SER SEQRES 2 C 145 LYS TYR LYS TYR ARG ASP LEU THR VAL ARG GLU THR VAL SEQRES 3 C 145 ASN VAL ILE THR LEU TYR LYS ASP LEU LYS PRO VAL LEU SEQRES 4 C 145 ASP SER TYR VAL PHE ASN ASP GLY SER SER ARG GLU LEU SEQRES 5 C 145 MSE ASN LEU THR GLY THR ILE PRO VAL PRO TYR ARG GLY SEQRES 6 C 145 ASN THR TYR ASN ILE PRO ILE CYS LEU TRP LEU LEU ASP SEQRES 7 C 145 THR TYR PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS PRO SEQRES 8 C 145 THR SER SER MSE THR ILE LYS THR GLY LYS HIS VAL ASP SEQRES 9 C 145 ALA ASN GLY LYS ILE TYR LEU PRO TYR LEU HIS GLU TRP SEQRES 10 C 145 LYS HIS PRO GLN SER ASP LEU LEU GLY LEU ILE GLN VAL SEQRES 11 C 145 MSE ILE VAL VAL PHE GLY ASP GLU PRO PRO VAL PHE SER SEQRES 12 C 145 ARG PRO SEQRES 1 D 76 MSE GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MODRES 1S1Q MSE A 11 MET SELENOMETHIONINE MODRES 1S1Q MSE A 53 MET SELENOMETHIONINE MODRES 1S1Q MSE A 95 MET SELENOMETHIONINE MODRES 1S1Q MSE A 131 MET SELENOMETHIONINE MODRES 1S1Q MSE B 1 MET SELENOMETHIONINE MODRES 1S1Q MSE C 11 MET SELENOMETHIONINE MODRES 1S1Q MSE C 53 MET SELENOMETHIONINE MODRES 1S1Q MSE C 95 MET SELENOMETHIONINE MODRES 1S1Q MSE C 131 MET SELENOMETHIONINE MODRES 1S1Q MSE D 1 MET SELENOMETHIONINE HET MSE A 11 8 HET MSE A 53 8 HET MSE A 95 8 HET MSE A 131 8 HET MSE B 1 8 HET MSE C 11 8 HET MSE C 53 8 HET MSE C 95 8 HET MSE C 131 8 HET MSE D 1 8 HET CU A9002 1 HET SO4 A 503 5 HET SO4 A 504 5 HET CU B9003 1 HET CU C9001 1 HET SO4 C 502 5 HET SO4 C 505 5 HET ACY C 510 4 HET CU D9004 1 HET ACY D 511 4 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 5 CU 4(CU 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 12 ACY 2(C2 H4 O2) FORMUL 15 HOH *350(H2 O) HELIX 1 1 SER A 4 VAL A 12 1 9 HELIX 2 2 TYR A 17 TYR A 32 1 16 HELIX 3 3 LEU A 111 GLU A 116 1 6 HELIX 4 4 ASP A 123 GLU A 138 1 16 HELIX 5 5 THR B 22 GLY B 35 1 14 HELIX 6 6 PRO B 37 ASP B 39 5 3 HELIX 7 7 LEU B 56 ASN B 60 5 5 HELIX 8 8 SER C 4 VAL C 12 1 9 HELIX 9 9 TYR C 17 TYR C 32 1 16 HELIX 10 10 LEU C 111 GLU C 116 1 6 HELIX 11 11 ASP C 123 GLU C 138 1 16 HELIX 12 12 THR D 22 GLY D 35 1 14 HELIX 13 13 PRO D 37 ASP D 39 5 3 HELIX 14 14 LEU D 56 ASN D 60 5 5 SHEET 1 A 4 LEU A 35 VAL A 43 0 SHEET 2 A 4 SER A 49 TYR A 63 -1 O ARG A 50 N TYR A 42 SHEET 3 A 4 ASN A 66 LEU A 76 -1 O TYR A 68 N VAL A 61 SHEET 4 A 4 ILE A 86 VAL A 89 -1 O ILE A 86 N TRP A 75 SHEET 1 B 2 THR A 96 ILE A 97 0 SHEET 2 B 2 VAL A 141 PHE A 142 -1 O PHE A 142 N THR A 96 SHEET 1 C 5 ILE B 13 GLU B 16 0 SHEET 2 C 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 C 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 C 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 C 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 D 4 LEU C 35 VAL C 43 0 SHEET 2 D 4 SER C 49 TYR C 63 -1 O LEU C 52 N ASP C 40 SHEET 3 D 4 ASN C 66 LEU C 76 -1 O ILE C 72 N GLY C 57 SHEET 4 D 4 ILE C 86 VAL C 89 -1 O ILE C 86 N TRP C 75 SHEET 1 E 2 THR C 96 ILE C 97 0 SHEET 2 E 2 VAL C 141 PHE C 142 -1 O PHE C 142 N THR C 96 SHEET 1 F 5 ILE D 13 GLU D 16 0 SHEET 2 F 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 F 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 F 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 F 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK C LYS A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N VAL A 12 1555 1555 1.33 LINK C LEU A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N ASN A 54 1555 1555 1.32 LINK C SER A 94 N MSE A 95 1555 1555 1.34 LINK C MSE A 95 N THR A 96 1555 1555 1.33 LINK C VAL A 130 N MSE A 131 1555 1555 1.32 LINK C MSE A 131 N ILE A 132 1555 1555 1.33 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C LYS C 10 N MSE C 11 1555 1555 1.33 LINK C MSE C 11 N VAL C 12 1555 1555 1.33 LINK C LEU C 52 N MSE C 53 1555 1555 1.32 LINK C MSE C 53 N ASN C 54 1555 1555 1.33 LINK C SER C 94 N MSE C 95 1555 1555 1.34 LINK C MSE C 95 N THR C 96 1555 1555 1.33 LINK C VAL C 130 N MSE C 131 1555 1555 1.32 LINK C MSE C 131 N ILE C 132 1555 1555 1.34 LINK C MSE D 1 N GLN D 2 1555 1555 1.32 LINK NE2 HIS A 102 CU CU A9002 1555 1555 2.05 LINK NE2 HIS A 115 CU CU B9003 4656 1555 2.02 LINK OE2 GLU A 138 CU CU A9002 1555 1555 1.93 LINK CU CU A9002 O HOH A9023 1555 1555 2.15 LINK CU CU A9002 OE1 GLU B 34 1555 4646 2.19 LINK CU CU A9002 O HOH B9015 1555 4646 2.38 LINK O HOH A9109 CU CU B9003 4656 1555 2.24 LINK OD1 ASP B 32 CU CU B9003 1555 1555 1.98 LINK NE2 HIS C 102 CU CU C9001 1555 1555 2.12 LINK NE2 HIS C 115 CU CU D9004 4647 1555 2.13 LINK OE2 GLU C 138 CU CU C9001 1555 1555 2.04 LINK CU CU C9001 O HOH C9042 1555 1555 2.27 LINK CU CU C9001 O HOH C9086 1555 1555 2.28 LINK CU CU C9001 OE1 GLU D 34 1555 4657 2.31 LINK OD1 ASP D 32 CU CU D9004 1555 1555 2.02 LINK CU CU D9004 O HOH D9005 1555 1555 1.98 LINK CU CU D9004 O HOH D9060 1555 1555 2.09 LINK CU CU D9004 O HOH D9061 1555 1555 2.11 CISPEP 1 TYR A 80 PRO A 81 0 9.70 CISPEP 2 HIS A 119 PRO A 120 0 3.72 CISPEP 3 TYR C 80 PRO C 81 0 3.80 CISPEP 4 HIS C 119 PRO C 120 0 -1.17 SITE 1 AC1 6 LYS C 101 HIS C 102 GLU C 138 HOH C9042 SITE 2 AC1 6 HOH C9086 GLU D 34 SITE 1 AC2 5 HIS A 102 GLU A 138 HOH A9023 GLU B 34 SITE 2 AC2 5 HOH B9015 SITE 1 AC3 3 HIS A 115 HOH A9109 ASP B 32 SITE 1 AC4 5 HIS C 115 ASP D 32 HOH D9005 HOH D9060 SITE 2 AC4 5 HOH D9061 SITE 1 AC5 4 LYS C 16 ARG C 18 ASP C 19 HOH C9087 SITE 1 AC6 4 LYS A 16 ARG A 18 ASP A 19 HOH A9065 SITE 1 AC7 5 GLY A 100 LYS A 101 THR B 7 THR B 9 SITE 2 AC7 5 GLY B 10 SITE 1 AC8 4 THR C 92 SER C 93 HOH C9082 ASN D 60 SITE 1 AC9 4 ILE C 70 PRO C 139 PRO C 140 VAL C 141 SITE 1 BC1 5 LYS D 27 PRO D 38 ASP D 39 ASP D 52 SITE 2 BC1 5 HOH D9037 CRYST1 143.634 59.154 93.998 90.00 128.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006962 0.000000 0.005572 0.00000 SCALE2 0.000000 0.016905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013626 0.00000