PDB Short entry for 1S2G HEADER TRANSFERASE 08-JAN-04 1S2G TITLE PURINE 2'DEOXYRIBOSYLTRANSFERASE + 2'-DEOXYADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE TRANS DEOXYRIBOSYLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PURINE 2'-DEOXYRIBOSYLTANSFERASE; COMPND 5 EC: 2.4.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS HELVETICUS; SOURCE 3 ORGANISM_TAXID: 1587; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PTD, 2'-DEOXYADENOSINE, 2'-PURINE DEOXYRIBOSYLTANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ANAND,P.A.KAMINSKI,S.E.EALICK REVDAT 5 14-FEB-24 1S2G 1 REMARK REVDAT 4 13-JUL-11 1S2G 1 VERSN REVDAT 3 24-FEB-09 1S2G 1 VERSN REVDAT 2 11-MAY-04 1S2G 1 REMARK REVDAT 1 30-MAR-04 1S2G 0 JRNL AUTH R.ANAND,P.A.KAMINSKI,S.E.EALICK JRNL TITL STRUCTURES OF PURINE 2'-DEOXYRIBOSYLTRANSFERASE, SUBSTRATE JRNL TITL 2 COMPLEXES, AND THE RIBOSYLATED ENZYME INTERMEDIATE AT 2.0 A JRNL TITL 3 RESOLUTION. JRNL REF BIOCHEMISTRY V. 43 2384 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14992575 JRNL DOI 10.1021/BI035723K REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 265301.550 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 33912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3396 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4956 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 585 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.84000 REMARK 3 B22 (A**2) : 2.84000 REMARK 3 B33 (A**2) : -5.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 33.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : 3DA.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : 3DA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : 0.33400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 100MM TRIS , REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.48650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.79350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.79350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.72975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.79350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.79350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.24325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.79350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.79350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 138.72975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.79350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.79350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.24325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.48650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 47 REMARK 465 ASN A 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 VAL A 5 CG1 CG2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 THR A 143 OG1 CG2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 TYR A 167 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 VAL B 4 CG1 CG2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASN B 56 CG OD1 ND2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 LYS C 2 CG CD CE NZ REMARK 470 VAL C 5 CG1 CG2 REMARK 470 SER C 18 OG REMARK 470 LYS C 55 CG CD CE NZ REMARK 470 ASN C 56 CG OD1 ND2 REMARK 470 GLU C 58 CG CD OE1 OE2 REMARK 470 GLU C 119 CG CD OE1 OE2 REMARK 470 GLU C 146 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1254 O HOH C 1213 6555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 115 79.07 -117.87 REMARK 500 CYS A 156 67.40 38.32 REMARK 500 ASN A 159 81.37 -159.24 REMARK 500 SER B 14 146.71 -177.32 REMARK 500 PHE B 16 51.18 -169.50 REMARK 500 ASP B 47 -103.10 -105.07 REMARK 500 ASN B 159 84.63 -153.87 REMARK 500 SER C 14 149.55 -174.35 REMARK 500 TYR C 17 -42.83 72.77 REMARK 500 ASP C 46 -83.94 -57.12 REMARK 500 LYS C 55 -90.31 -42.30 REMARK 500 ILE C 59 98.50 -65.00 REMARK 500 ARG C 63 133.18 74.99 REMARK 500 ASN C 159 88.54 -158.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3D1 A 1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3D1 B 1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3D1 C 1170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F8Y RELATED DB: PDB REMARK 900 STRUCTURE OF 2'-DEOXYRIBOSYLTRANSFERASE(NTD) REMARK 900 RELATED ID: 1S2D RELATED DB: PDB REMARK 900 PURINE 2'-DEOXYRIBOSYL COMPLEX WITH ARABINOSIDE: RIBOSYLATED REMARK 900 INTERMEDIATE (ARAA) REMARK 900 RELATED ID: 1S2I RELATED DB: PDB REMARK 900 PURINE 2'DEOXYRIBOSYLTRANSFERASE + BROMOPURINE REMARK 900 RELATED ID: 1S2L RELATED DB: PDB REMARK 900 PURINE 2'DEOXYRIBOSYLTRANSFERASE NATIVE STRUCTURE REMARK 900 RELATED ID: 1S3F RELATED DB: PDB REMARK 900 PURINE 2'-DEOXYRIBOSYLTRANSFERASE + SELENOINOSINE DBREF 1S2G A 1 167 UNP Q8RLY5 Q8RLY5_LACHE 1 167 DBREF 1S2G B 1 167 UNP Q8RLY5 Q8RLY5_LACHE 1 167 DBREF 1S2G C 1 167 UNP Q8RLY5 Q8RLY5_LACHE 1 167 SEQRES 1 A 167 MET LYS ALA VAL VAL PRO THR GLY LYS ILE TYR LEU GLY SEQRES 2 A 167 SER PRO PHE TYR SER ASP ALA GLN ARG GLU ARG ALA ALA SEQRES 3 A 167 LYS ALA LYS GLU LEU LEU ALA LYS ASN PRO SER ILE ALA SEQRES 4 A 167 HIS VAL PHE PHE PRO PHE ASP ASP GLY PHE THR ASP PRO SEQRES 5 A 167 ASP GLU LYS ASN PRO GLU ILE GLY GLY ILE ARG SER MET SEQRES 6 A 167 VAL TRP ARG ASP ALA THR TYR GLN ASN ASP LEU THR GLY SEQRES 7 A 167 ILE SER ASN ALA THR CYS GLY VAL PHE LEU TYR ASP MET SEQRES 8 A 167 ASP GLN LEU ASP ASP GLY SER ALA PHE GLU ILE GLY PHE SEQRES 9 A 167 MET ARG ALA MET HIS LYS PRO VAL ILE LEU VAL PRO PHE SEQRES 10 A 167 THR GLU HIS PRO GLU LYS GLU LYS LYS MET ASN LEU MET SEQRES 11 A 167 ILE ALA GLN GLY VAL THR THR ILE ILE ASP GLY ASN THR SEQRES 12 A 167 GLU PHE GLU LYS LEU ALA ASP TYR ASN PHE ASN GLU CYS SEQRES 13 A 167 PRO SER ASN PRO VAL ARG GLY TYR GLY ILE TYR SEQRES 1 B 167 MET LYS ALA VAL VAL PRO THR GLY LYS ILE TYR LEU GLY SEQRES 2 B 167 SER PRO PHE TYR SER ASP ALA GLN ARG GLU ARG ALA ALA SEQRES 3 B 167 LYS ALA LYS GLU LEU LEU ALA LYS ASN PRO SER ILE ALA SEQRES 4 B 167 HIS VAL PHE PHE PRO PHE ASP ASP GLY PHE THR ASP PRO SEQRES 5 B 167 ASP GLU LYS ASN PRO GLU ILE GLY GLY ILE ARG SER MET SEQRES 6 B 167 VAL TRP ARG ASP ALA THR TYR GLN ASN ASP LEU THR GLY SEQRES 7 B 167 ILE SER ASN ALA THR CYS GLY VAL PHE LEU TYR ASP MET SEQRES 8 B 167 ASP GLN LEU ASP ASP GLY SER ALA PHE GLU ILE GLY PHE SEQRES 9 B 167 MET ARG ALA MET HIS LYS PRO VAL ILE LEU VAL PRO PHE SEQRES 10 B 167 THR GLU HIS PRO GLU LYS GLU LYS LYS MET ASN LEU MET SEQRES 11 B 167 ILE ALA GLN GLY VAL THR THR ILE ILE ASP GLY ASN THR SEQRES 12 B 167 GLU PHE GLU LYS LEU ALA ASP TYR ASN PHE ASN GLU CYS SEQRES 13 B 167 PRO SER ASN PRO VAL ARG GLY TYR GLY ILE TYR SEQRES 1 C 167 MET LYS ALA VAL VAL PRO THR GLY LYS ILE TYR LEU GLY SEQRES 2 C 167 SER PRO PHE TYR SER ASP ALA GLN ARG GLU ARG ALA ALA SEQRES 3 C 167 LYS ALA LYS GLU LEU LEU ALA LYS ASN PRO SER ILE ALA SEQRES 4 C 167 HIS VAL PHE PHE PRO PHE ASP ASP GLY PHE THR ASP PRO SEQRES 5 C 167 ASP GLU LYS ASN PRO GLU ILE GLY GLY ILE ARG SER MET SEQRES 6 C 167 VAL TRP ARG ASP ALA THR TYR GLN ASN ASP LEU THR GLY SEQRES 7 C 167 ILE SER ASN ALA THR CYS GLY VAL PHE LEU TYR ASP MET SEQRES 8 C 167 ASP GLN LEU ASP ASP GLY SER ALA PHE GLU ILE GLY PHE SEQRES 9 C 167 MET ARG ALA MET HIS LYS PRO VAL ILE LEU VAL PRO PHE SEQRES 10 C 167 THR GLU HIS PRO GLU LYS GLU LYS LYS MET ASN LEU MET SEQRES 11 C 167 ILE ALA GLN GLY VAL THR THR ILE ILE ASP GLY ASN THR SEQRES 12 C 167 GLU PHE GLU LYS LEU ALA ASP TYR ASN PHE ASN GLU CYS SEQRES 13 C 167 PRO SER ASN PRO VAL ARG GLY TYR GLY ILE TYR HET 3D1 A1168 18 HET 3D1 B1169 18 HET 3D1 C1170 18 HETNAM 3D1 (2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2- HETNAM 2 3D1 (HYDROXYMETHYL)FURAN-3-OL HETSYN 3D1 2'-DEOXYADENOSINE FORMUL 4 3D1 3(C10 H13 N5 O3) FORMUL 7 HOH *272(H2 O) HELIX 1 1 SER A 18 ALA A 33 1 16 HELIX 2 2 SER A 64 ALA A 82 1 19 HELIX 3 3 ASP A 95 MET A 108 1 14 HELIX 4 4 ASN A 128 VAL A 135 1 8 HELIX 5 5 GLU A 144 ASP A 150 5 7 HELIX 6 6 SER B 18 LYS B 34 1 17 HELIX 7 7 SER B 64 ALA B 82 1 19 HELIX 8 8 ASP B 95 MET B 108 1 14 HELIX 9 9 LEU B 129 VAL B 135 1 7 HELIX 10 10 ASP B 140 PHE B 145 1 6 HELIX 11 11 GLU B 146 ASP B 150 5 5 HELIX 12 12 SER C 18 LYS C 34 1 17 HELIX 13 13 SER C 64 ALA C 82 1 19 HELIX 14 14 ASP C 95 MET C 108 1 14 HELIX 15 15 ASN C 128 VAL C 135 1 8 HELIX 16 16 ASP C 140 PHE C 145 1 6 HELIX 17 17 GLU C 146 ASP C 150 5 5 SHEET 1 A 5 ILE A 38 PHE A 42 0 SHEET 2 A 5 GLY A 8 GLY A 13 1 N GLY A 8 O ALA A 39 SHEET 3 A 5 CYS A 84 ASP A 90 1 O VAL A 86 N TYR A 11 SHEET 4 A 5 VAL A 112 PHE A 117 1 O ILE A 113 N GLY A 85 SHEET 5 A 5 THR A 137 ILE A 138 1 O THR A 137 N LEU A 114 SHEET 1 B 2 LYS A 126 MET A 127 0 SHEET 2 B 2 GLY A 165 ILE A 166 1 O GLY A 165 N MET A 127 SHEET 1 C 5 ILE B 38 PHE B 42 0 SHEET 2 C 5 GLY B 8 GLY B 13 1 N ILE B 10 O PHE B 42 SHEET 3 C 5 CYS B 84 ASP B 90 1 O VAL B 86 N TYR B 11 SHEET 4 C 5 VAL B 112 PHE B 117 1 O ILE B 113 N GLY B 85 SHEET 5 C 5 THR B 137 ILE B 138 1 O THR B 137 N LEU B 114 SHEET 1 D 2 LYS B 126 ASN B 128 0 SHEET 2 D 2 GLY B 165 TYR B 167 1 O GLY B 165 N MET B 127 SHEET 1 E 5 ILE C 38 PHE C 42 0 SHEET 2 E 5 GLY C 8 GLY C 13 1 N GLY C 8 O ALA C 39 SHEET 3 E 5 CYS C 84 ASP C 90 1 O VAL C 86 N TYR C 11 SHEET 4 E 5 VAL C 112 PHE C 117 1 O ILE C 113 N GLY C 85 SHEET 5 E 5 THR C 137 ILE C 138 1 O THR C 137 N LEU C 114 SITE 1 AC1 16 TYR A 11 GLY A 13 SER A 14 TYR A 17 SITE 2 AC1 16 PRO A 44 PHE A 45 THR A 71 ASP A 75 SITE 3 AC1 16 ASP A 95 GLY A 97 GLU A 101 HOH A1214 SITE 4 AC1 16 ASN C 128 MET C 130 TYR C 167 HOH C1174 SITE 1 AC2 15 GLY B 13 SER B 14 TYR B 17 PRO B 44 SITE 2 AC2 15 PHE B 45 THR B 71 ASP B 75 ASP B 95 SITE 3 AC2 15 GLY B 97 GLU B 101 ASN B 128 LEU B 129 SITE 4 AC2 15 MET B 130 TYR B 167 HOH B1184 SITE 1 AC3 15 ASN A 128 LEU A 129 MET A 130 TYR A 167 SITE 2 AC3 15 HOH A1182 GLY C 13 SER C 14 PRO C 44 SITE 3 AC3 15 PHE C 45 TRP C 67 THR C 71 ASP C 75 SITE 4 AC3 15 ASP C 95 GLY C 97 GLU C 101 CRYST1 79.587 79.587 184.973 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005406 0.00000