PDB Short entry for 1S31 HEADER SIGNALING PROTEIN 12-JAN-04 1S31 TITLE CRYSTAL STRUCTURE ANALYSIS OF THE HUMAN TUB PROTEIN (ISOFORM A) TITLE 2 SPANNING RESIDUES 289 THROUGH 561 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBBY ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TUB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS BETA BARREL, HYDROPHOBIC HELIX, HYDROPHOBIC CORE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BOUTBOUL,K.J.CARROLL,A.BASDEVANT,C.GOMEZ,E.NANDROT,K.CLEMENT, AUTHOR 2 L.SHAPIRO,M.ABITBOL REVDAT 5 23-AUG-23 1S31 1 REMARK SEQADV REVDAT 4 11-OCT-17 1S31 1 REMARK REVDAT 3 13-JUL-11 1S31 1 VERSN REVDAT 2 24-FEB-09 1S31 1 VERSN REVDAT 1 25-JAN-05 1S31 0 JRNL AUTH S.BOUTBOUL,K.J.CARROLL,A.BASDEVANT,C.GOMEZ,E.NANDROT, JRNL AUTH 2 K.CLEMENT,L.SHAPIRO,M.ABITBOL JRNL TITL A NOVEL HUMAN OBESITY AND SENSORY DEFICIT SYNDROME RESULTING JRNL TITL 2 FROM A MUTATION IN THE TUB GENE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.OTWINOWSKI,W.MINOR REMARK 1 TITL PROCESSING OF X-RAY DIFFRACTION DATA COLLECTED IN REMARK 1 TITL 2 OSCILLATION MODE REMARK 1 REF METHODS ENZYMOL. V. 276 307 1997 REMARK 1 REFN ISSN 0076-6879 REMARK 1 DOI 10.1016/S0076-6879(97)76066-X REMARK 1 REFERENCE 2 REMARK 1 AUTH J.NAVAZA REMARK 1 TITL AMORE: AN AUTOMATED PACKAGE FOR MOLECULAR REPLACEMENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 50 157 1994 REMARK 1 REFN ISSN 0108-7673 REMARK 1 DOI 10.1107/S0108767393007597 REMARK 1 REFERENCE 3 REMARK 1 AUTH G.N.MURSHUDOV,A.A.VAGIN,E.J.DODSON REMARK 1 TITL REFINEMENT OF MACROMOLECULAR STRUCTURES BY THE REMARK 1 TITL 2 MAXIMUM-LIKELIHOOD METHOD REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 53 240 1997 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444996012255 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.967 REMARK 3 FREE R VALUE TEST SET COUNT : 767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1033 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 561 REMARK 3 ORIGIN FOR THE GROUP (A): 121.8740 21.1890 73.1110 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.0593 REMARK 3 T33: 0.1429 T12: -0.0229 REMARK 3 T13: -0.0135 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.5789 L22: 2.8262 REMARK 3 L33: 0.7035 L12: 0.9031 REMARK 3 L13: 0.1422 L23: -0.3490 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: -0.0139 S13: 0.2364 REMARK 3 S21: -0.0491 S22: 0.1017 S23: 0.3134 REMARK 3 S31: -0.1653 S32: 0.0078 S33: -0.0244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1S31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9814 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.00 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE CCP4 4.2 REMARK 200 STARTING MODEL: PDB ENTRY 1C8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 400, 5MM MAGNESIUM CHLORIDE, REMARK 280 100MM SODIUM ACETATE, 15MM DTT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.2K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.99050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.99050 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.99050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 74.99050 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 74.99050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 74.99050 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 74.99050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.99050 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 74.99050 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 74.99050 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 74.99050 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 74.99050 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 74.99050 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 74.99050 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 74.99050 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 74.99050 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 74.99050 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 74.99050 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 74.99050 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 74.99050 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 74.99050 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 74.99050 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 74.99050 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 74.99050 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 74.99050 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 74.99050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 149.98100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 LEU A 558 CG CD1 CD2 REMARK 470 GLU A 561 C CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 300 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 327 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 372 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 490 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 304 -102.05 -103.88 REMARK 500 LEU A 353 -54.05 -120.60 REMARK 500 LYS A 363 33.45 -93.61 REMARK 500 THR A 364 -90.47 -124.28 REMARK 500 SER A 365 114.78 162.83 REMARK 500 PRO A 405 33.45 -73.35 REMARK 500 LEU A 413 9.00 -61.55 REMARK 500 PHE A 434 57.92 -46.40 REMARK 500 VAL A 454 -167.18 -61.01 REMARK 500 SER A 556 123.04 -33.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 555 SER A 556 -146.94 REMARK 500 LYS A 557 LEU A 558 -140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C8Z RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF MOUSE BRAIN TUBBY PROTEIN REMARK 900 RELATED ID: 1I7E RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF MOUSE BRAIN TUBBY PROTEIN BOUND TO REMARK 900 PHOSPHATIDYLINOSITOL 4,5-BIS-PHOSPHATE DBREF 1S31 A 289 561 UNP P50607 TUB_HUMAN 289 561 SEQADV 1S31 PHE A 336 UNP P50607 TYR 336 CONFLICT SEQRES 1 A 273 ALA PRO SER PRO THR ALA PRO GLU GLN PRO VAL ASP VAL SEQRES 2 A 273 GLU VAL GLN ASP LEU GLU GLU PHE ALA LEU ARG PRO ALA SEQRES 3 A 273 PRO GLN GLY ILE THR ILE LYS CYS ARG ILE THR ARG ASP SEQRES 4 A 273 LYS LYS GLY MET ASP ARG GLY MET PHE PRO THR TYR PHE SEQRES 5 A 273 LEU HIS LEU ASP ARG GLU ASP GLY LYS LYS VAL PHE LEU SEQRES 6 A 273 LEU ALA GLY ARG LYS ARG LYS LYS SER LYS THR SER ASN SEQRES 7 A 273 TYR LEU ILE SER VAL ASP PRO THR ASP LEU SER ARG GLY SEQRES 8 A 273 GLY ASP SER TYR ILE GLY LYS LEU ARG SER ASN LEU MET SEQRES 9 A 273 GLY THR LYS PHE THR VAL TYR ASP ASN GLY VAL ASN PRO SEQRES 10 A 273 GLN LYS ALA SER SER SER THR LEU GLU SER GLY THR LEU SEQRES 11 A 273 ARG GLN GLU LEU ALA ALA VAL CYS TYR GLU THR ASN VAL SEQRES 12 A 273 LEU GLY PHE LYS GLY PRO ARG LYS MET SER VAL ILE VAL SEQRES 13 A 273 PRO GLY MET ASN MET VAL HIS GLU ARG VAL SER ILE ARG SEQRES 14 A 273 PRO ARG ASN GLU HIS GLU THR LEU LEU ALA ARG TRP GLN SEQRES 15 A 273 ASN LYS ASN THR GLU SER ILE ILE GLU LEU GLN ASN LYS SEQRES 16 A 273 THR PRO VAL TRP ASN ASP ASP THR GLN SER TYR VAL LEU SEQRES 17 A 273 ASN PHE HIS GLY ARG VAL THR GLN ALA SER VAL LYS ASN SEQRES 18 A 273 PHE GLN ILE ILE HIS GLY ASN ASP PRO ASP TYR ILE VAL SEQRES 19 A 273 MET GLN PHE GLY ARG VAL ALA GLU ASP VAL PHE THR MET SEQRES 20 A 273 ASP TYR ASN TYR PRO LEU CYS ALA LEU GLN ALA PHE ALA SEQRES 21 A 273 ILE ALA LEU SER SER PHE ASP SER LYS LEU ALA CYS GLU HET PGE A 1 10 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 PGE C6 H14 O4 FORMUL 3 HOH *90(H2 O) HELIX 1 1 ASP A 305 LEU A 311 1 7 HELIX 2 2 GLY A 330 GLY A 334 5 5 HELIX 3 3 ASP A 372 ARG A 378 1 7 HELIX 4 4 ASN A 460 GLU A 463 5 4 HELIX 5 5 THR A 464 ASN A 471 1 8 HELIX 6 6 CYS A 542 SER A 556 1 15 SHEET 1 A13 ILE A 320 ASP A 327 0 SHEET 2 A13 THR A 338 ASP A 344 -1 O THR A 338 N ASP A 327 SHEET 3 A13 LYS A 350 LYS A 358 -1 O VAL A 351 N LEU A 343 SHEET 4 A13 ASN A 366 SER A 370 -1 O SER A 370 N ALA A 355 SHEET 5 A13 GLY A 385 SER A 389 -1 O GLY A 385 N ILE A 369 SHEET 6 A13 LYS A 395 ASP A 400 -1 O THR A 397 N ARG A 388 SHEET 7 A13 GLU A 421 TYR A 427 -1 O ALA A 423 N VAL A 398 SHEET 8 A13 MET A 440 PRO A 445 -1 O SER A 441 N CYS A 426 SHEET 9 A13 ILE A 477 ASN A 482 -1 O LEU A 480 N VAL A 442 SHEET 10 A13 PHE A 510 HIS A 514 -1 O ILE A 513 N GLN A 481 SHEET 11 A13 MET A 523 ALA A 529 -1 O MET A 523 N ILE A 512 SHEET 12 A13 VAL A 532 TYR A 537 -1 O THR A 534 N GLY A 526 SHEET 13 A13 ILE A 320 ASP A 327 -1 N ILE A 324 O PHE A 533 SHEET 1 B 2 VAL A 486 ASN A 488 0 SHEET 2 B 2 SER A 493 VAL A 495 -1 O SER A 493 N ASN A 488 CISPEP 1 TYR A 539 PRO A 540 0 20.22 SITE 1 AC1 5 THR A 325 PHE A 340 HIS A 342 PHE A 352 SITE 2 AC1 5 HOH A 695 CRYST1 149.981 149.981 149.981 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006668 0.00000