PDB Short entry for 1S4X HEADER CELL ADHESION 19-JAN-04 1S4X TITLE NMR STRUCTURE OF THE INTEGRIN B3 CYTOPLASMIC DOMAIN IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN (RESIDUES 742-788); COMPND 5 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIIA, GPIIIA, CD61 ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB3, GP3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.VINOGRADOVA,J.VAYNBERG,X.KONG,T.A.HAAS,E.F.PLOW,J.QIN REVDAT 4 02-MAR-22 1S4X 1 REMARK SEQADV REVDAT 3 24-FEB-09 1S4X 1 VERSN REVDAT 2 06-APR-04 1S4X 1 JRNL REVDAT 1 09-MAR-04 1S4X 0 JRNL AUTH O.VINOGRADOVA,J.VAYNBERG,X.KONG,T.A.HAAS,E.F.PLOW,J.QIN JRNL TITL MEMBRANE-MEDIATED STRUCTURAL TRANSITIONS AT THE CYTOPLASMIC JRNL TITL 2 FACE DURING INTEGRIN ACTIVATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 4094 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15024114 JRNL DOI 10.1073/PNAS.0400742101 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S4X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021371. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1MM PEPTIDE, 300MM DDPC, 95/5% REMARK 210 H2O/D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N/13C-SIMULTENEOUS SEPARETED REMARK 210 3D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PIPP, X-PLOR REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY - REMARK 210 DYNAMIC SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 88 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 39 H ARG A 41 0.90 REMARK 500 O ARG A 29 H ALA A 33 1.42 REMARK 500 O SER A 57 H ASN A 61 1.49 REMARK 500 O LEU A 23 H HIS A 27 1.50 REMARK 500 O THR A 60 H TYR A 64 1.53 REMARK 500 O GLU A 31 H PHE A 35 1.53 REMARK 500 O GLU A 36 H ALA A 40 1.54 REMARK 500 O ARG A 39 N ARG A 41 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 29 -15.65 -49.79 REMARK 500 1 ALA A 40 15.67 -27.45 REMARK 500 1 ALA A 42 3.68 -64.71 REMARK 500 1 TRP A 44 25.24 -144.97 REMARK 500 1 ASP A 45 -76.23 -176.19 REMARK 500 1 THR A 46 -42.78 79.31 REMARK 500 1 ASN A 48 -109.62 -7.87 REMARK 500 1 PRO A 50 -9.09 -55.26 REMARK 500 1 ASN A 61 -8.02 -57.67 REMARK 500 1 TYR A 64 -7.87 -52.39 REMARK 500 1 ARG A 65 1.41 -63.89 REMARK 500 2 ARG A 29 -14.85 -49.65 REMARK 500 2 ALA A 40 15.55 -26.34 REMARK 500 2 TRP A 44 19.95 -148.16 REMARK 500 2 ASP A 45 -70.26 -172.17 REMARK 500 2 THR A 46 -35.47 81.08 REMARK 500 2 ASN A 48 -126.39 23.74 REMARK 500 2 PRO A 50 -10.16 -48.39 REMARK 500 2 ASN A 61 -7.53 -58.63 REMARK 500 3 ALA A 40 14.74 -30.00 REMARK 500 3 TRP A 44 21.75 -148.62 REMARK 500 3 ASP A 45 -68.39 -175.64 REMARK 500 3 THR A 46 -40.87 80.30 REMARK 500 3 ASN A 48 -114.29 30.60 REMARK 500 3 PRO A 50 -7.50 -50.47 REMARK 500 3 ASN A 61 -7.90 -56.60 REMARK 500 4 ALA A 40 3.22 -46.32 REMARK 500 4 TRP A 44 20.74 -149.49 REMARK 500 4 ASP A 45 -68.57 -175.41 REMARK 500 4 THR A 46 -40.06 81.89 REMARK 500 4 ASN A 48 -120.61 33.57 REMARK 500 4 PRO A 50 -10.93 -47.54 REMARK 500 4 ASN A 61 -7.53 -58.96 REMARK 500 5 ARG A 29 -15.34 -49.08 REMARK 500 5 ALA A 40 14.78 -26.71 REMARK 500 5 TRP A 44 20.46 -147.21 REMARK 500 5 ASP A 45 -70.47 -172.42 REMARK 500 5 THR A 46 -34.96 80.40 REMARK 500 5 ASN A 48 -128.60 20.14 REMARK 500 5 PRO A 50 -7.75 -48.61 REMARK 500 5 ASN A 61 -9.20 -54.67 REMARK 500 5 TYR A 64 -7.53 -49.59 REMARK 500 6 ALA A 40 15.64 -29.28 REMARK 500 6 ALA A 42 3.58 -64.60 REMARK 500 6 TRP A 44 20.02 -148.24 REMARK 500 6 ASP A 45 -68.96 -174.54 REMARK 500 6 THR A 46 -40.74 82.97 REMARK 500 6 ASN A 48 -95.95 37.78 REMARK 500 6 PRO A 50 -7.03 -44.65 REMARK 500 6 ASN A 61 -8.01 -58.92 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S4W RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE INTEGRIN AIIB CYTOPLASMIC DOMAIN IN DPC REMARK 900 MICELLES DBREF 1S4X A 21 67 UNP P05106 ITB3_HUMAN 742 788 SEQADV 1S4X GLY A 1 UNP P05106 CLONING ARTIFACT SEQADV 1S4X SER A 2 UNP P05106 CLONING ARTIFACT SEQADV 1S4X SER A 3 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 4 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 5 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 6 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 7 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 8 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 9 UNP P05106 CLONING ARTIFACT SEQADV 1S4X SER A 10 UNP P05106 CLONING ARTIFACT SEQADV 1S4X SER A 11 UNP P05106 CLONING ARTIFACT SEQADV 1S4X GLY A 12 UNP P05106 CLONING ARTIFACT SEQADV 1S4X LEU A 13 UNP P05106 CLONING ARTIFACT SEQADV 1S4X VAL A 14 UNP P05106 CLONING ARTIFACT SEQADV 1S4X PRO A 15 UNP P05106 CLONING ARTIFACT SEQADV 1S4X ARG A 16 UNP P05106 CLONING ARTIFACT SEQADV 1S4X GLY A 17 UNP P05106 CLONING ARTIFACT SEQADV 1S4X SER A 18 UNP P05106 CLONING ARTIFACT SEQADV 1S4X HIS A 19 UNP P05106 CLONING ARTIFACT SEQADV 1S4X MET A 20 UNP P05106 CLONING ARTIFACT SEQRES 1 A 67 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 67 VAL PRO ARG GLY SER HIS MET LYS LEU LEU ILE THR ILE SEQRES 3 A 67 HIS ASP ARG LYS GLU PHE ALA LYS PHE GLU GLU GLU ARG SEQRES 4 A 67 ALA ARG ALA LYS TRP ASP THR ALA ASN ASN PRO LEU TYR SEQRES 5 A 67 LYS GLU ALA THR SER THR PHE THR ASN ILE THR TYR ARG SEQRES 6 A 67 GLY THR HELIX 1 1 LYS A 21 ALA A 40 1 20 HELIX 2 2 PRO A 50 ASN A 61 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000