PDB Short entry for 1S7E HEADER TRANSCRIPTION 29-JAN-04 1S7E TITLE SOLUTION STRUCTURE OF HNF-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINGING DOMAIN; COMPND 5 SYNONYM: HNF-6, ONE CUT DOMAIN FAMILY MEMBER 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: FVB-N; SOURCE 6 ORGAN: LIVER; SOURCE 7 GENE: RPOD; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSCRIPTION REGULATION, HOMEOBOX, DNA-BINDING, NUCLEAR PROTEIN, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.LIAO,W.SHENG REVDAT 3 02-MAR-22 1S7E 1 REMARK REVDAT 2 24-FEB-09 1S7E 1 VERSN REVDAT 1 28-DEC-04 1S7E 0 JRNL AUTH W.SHENG,H.YAN,F.M.RAUSA,R.H.COSTA,X.LIAO JRNL TITL STRUCTURE OF THE HEPATOCYTE NUCLEAR FACTOR 6ALPHA AND ITS JRNL TITL 2 INTERACTION WITH DNA. JRNL REF J.BIOL.CHEM. V. 279 33928 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15169783 JRNL DOI 10.1074/JBC.M403805200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT (DYANA), GUENTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S7E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021460. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1MM HNF-6 U-15N,13C, 50MM REMARK 210 PHOSPHATE BUFFER NA, 90% H2O, 10% REMARK 210 D2O; 1MM HNF-6 U-15N, 50MM REMARK 210 PHOSPHATE BUFFER NA, 90% H2O, 10% REMARK 210 D2O; 1MM HNF-6 U-15N,13C 2H, REMARK 210 50MM PHOSPHATE BUFFER NA, 90% REMARK 210 H2O, 10% D2O; 1MM HNF-6 U-13C, REMARK 210 50MM PHOSPHATE BUFFER NA, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D HNCA; REMARK 210 2D 15N HSQC; 3D_13C-SEPARATED_ REMARK 210 NOESY; 2D NOESY; 3D HNCACB, REMARK 210 CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D AND 3D REMARK 210 HOMONUCLEAR AND HETERONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 147 H ALA A 151 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 16 -37.46 -38.05 REMARK 500 1 LEU A 20 -82.19 -64.24 REMARK 500 1 LYS A 21 -73.51 -88.07 REMARK 500 1 ARG A 22 -33.69 176.89 REMARK 500 1 TYR A 23 34.39 -179.04 REMARK 500 1 SER A 24 66.58 -174.72 REMARK 500 1 ARG A 33 -77.56 -90.84 REMARK 500 1 VAL A 34 -67.13 -123.80 REMARK 500 1 ARG A 37 99.28 -172.15 REMARK 500 1 SER A 38 132.42 -171.11 REMARK 500 1 GLN A 39 69.46 -109.78 REMARK 500 1 LYS A 54 40.65 30.72 REMARK 500 1 LEU A 55 86.13 37.59 REMARK 500 1 ARG A 64 -38.75 -35.94 REMARK 500 1 GLN A 70 -72.14 -61.05 REMARK 500 1 GLU A 71 151.27 59.24 REMARK 500 1 PRO A 72 49.61 -74.98 REMARK 500 1 GLU A 73 35.04 34.76 REMARK 500 1 PHE A 74 68.39 177.65 REMARK 500 1 GLN A 75 49.07 -168.19 REMARK 500 1 MET A 77 22.85 -155.82 REMARK 500 1 LEU A 82 -157.50 -179.06 REMARK 500 1 ALA A 84 -176.48 80.99 REMARK 500 1 CYS A 85 71.39 55.88 REMARK 500 1 ARG A 87 -178.32 -57.42 REMARK 500 1 LYS A 88 76.54 64.44 REMARK 500 1 GLU A 89 81.72 -163.28 REMARK 500 1 GLU A 91 -64.34 70.30 REMARK 500 1 HIS A 92 135.88 63.29 REMARK 500 1 LYS A 94 90.83 -57.64 REMARK 500 1 ASP A 95 160.31 174.74 REMARK 500 1 VAL A 106 -73.13 -132.40 REMARK 500 1 PHE A 107 94.21 38.46 REMARK 500 1 GLU A 121 -90.05 -130.02 REMARK 500 1 ASN A 122 -31.85 175.91 REMARK 500 1 LYS A 123 31.63 -88.44 REMARK 500 1 PRO A 125 -91.11 -75.03 REMARK 500 1 SER A 126 84.04 25.76 REMARK 500 1 LEU A 139 -41.28 -171.92 REMARK 500 1 PHE A 148 -30.30 -36.76 REMARK 500 1 ALA A 151 -78.79 -79.15 REMARK 500 2 LEU A 20 -83.12 -53.34 REMARK 500 2 LYS A 21 -67.45 -90.81 REMARK 500 2 ARG A 22 -30.88 165.74 REMARK 500 2 TYR A 23 36.44 176.11 REMARK 500 2 SER A 24 53.60 -170.73 REMARK 500 2 ARG A 33 -70.83 -82.81 REMARK 500 2 VAL A 34 -79.58 -123.43 REMARK 500 2 GLN A 39 42.41 72.19 REMARK 500 2 THR A 41 -29.36 -39.09 REMARK 500 REMARK 500 THIS ENTRY HAS 765 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E3O RELATED DB: PDB DBREF 1S7E A 6 152 UNP O08755 HNF6_MOUSE 291 437 SEQRES 1 A 147 GLU ILE ASN THR LYS GLU VAL ALA GLN ARG ILE THR THR SEQRES 2 A 147 GLU LEU LYS ARG TYR SER ILE PRO GLN ALA ILE PHE ALA SEQRES 3 A 147 GLN ARG VAL LEU CYS ARG SER GLN GLY THR LEU SER ASP SEQRES 4 A 147 LEU LEU ARG ASN PRO LYS PRO TRP SER LYS LEU LYS SER SEQRES 5 A 147 GLY ARG GLU THR PHE ARG ARG MET TRP LYS TRP LEU GLN SEQRES 6 A 147 GLU PRO GLU PHE GLN ARG MET SER ALA LEU ARG LEU ALA SEQRES 7 A 147 ALA CYS LYS ARG LYS GLU GLN GLU HIS GLY LYS ASP ARG SEQRES 8 A 147 GLY ASN THR PRO LYS LYS PRO ARG LEU VAL PHE THR ASP SEQRES 9 A 147 VAL GLN ARG ARG THR LEU HIS ALA ILE PHE LYS GLU ASN SEQRES 10 A 147 LYS ARG PRO SER LYS GLU LEU GLN ILE THR ILE SER GLN SEQRES 11 A 147 GLN LEU GLY LEU GLU LEU SER THR VAL SER ASN PHE PHE SEQRES 12 A 147 MET ASN ALA ARG HELIX 1 1 THR A 9 LYS A 21 1 13 HELIX 2 2 PRO A 26 VAL A 34 1 9 HELIX 3 3 GLY A 40 LEU A 46 1 7 HELIX 4 4 GLY A 58 GLU A 71 1 14 HELIX 5 5 THR A 108 PHE A 119 1 12 HELIX 6 6 SER A 126 GLN A 135 1 10 HELIX 7 7 LEU A 141 ALA A 151 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000