PDB Short entry for 1SG4 HEADER ISOMERASE 23-FEB-04 1SG4 TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL DELTA3-DELTA2- TITLE 2 ENOYL-COA ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,2-TRANS-ENOYL-COA ISOMERASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DODECENOYL-COA DELTA-ISOMERASE; COMPND 5 EC: 5.3.3.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS CROTONASE FOLD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.PARTANEN,D.K.NOVIKOV,A.N.POPOV,A.M.MURSULA,J.K.HILTUNEN, AUTHOR 2 R.K.WIERENGA REVDAT 2 24-FEB-09 1SG4 1 VERSN REVDAT 1 18-JAN-05 1SG4 0 JRNL AUTH S.T.PARTANEN,D.K.NOVIKOV,A.N.POPOV,A.M.MURSULA, JRNL AUTH 2 J.K.HILTUNEN,R.K.WIERENGA JRNL TITL THE 1.3 A CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL JRNL TITL 2 DELTA3-DELTA2-ENOYL-COA ISOMERASE SHOWS A NOVEL JRNL TITL 3 MODE OF BINDING FOR THE FATTY ACYL GROUP. JRNL REF J.MOL.BIOL. V. 342 1197 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15351645 JRNL DOI 10.1016/J.JMB.2004.07.039 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.157 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 9150 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 182696 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 667 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : 0.031 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.064 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.069 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SG4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-02; 10-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG; EMBL/ REMARK 200 DESY, HAMBURG REMARK 200 BEAMLINE : X13; X13 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.802; 0.9202, 0.9184, 0.8500 REMARK 200 MONOCHROMATOR : TRIANGULAR; TRIANGULAR REMARK 200 OPTICS : BENT MIRRORS; BENT MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, SODIUM ACETATE, SODIUM REMARK 280 CLORIDE, PH 4.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.49200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.14400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.49200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.14400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 TYR A 251 REMARK 465 LEU A 252 REMARK 465 GLU A 253 REMARK 465 ARG A 254 REMARK 465 LEU A 255 REMARK 465 LYS A 256 REMARK 465 GLU A 257 REMARK 465 GLU A 258 REMARK 465 LYS A 259 REMARK 465 GLY A 260 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 GLU C 253 REMARK 465 ARG C 254 REMARK 465 LEU C 255 REMARK 465 LYS C 256 REMARK 465 GLU C 257 REMARK 465 GLU C 258 REMARK 465 LYS C 259 REMARK 465 GLY C 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 113 CB CYS B 113 SG -0.101 REMARK 500 CYS C 113 CB CYS C 113 SG -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 58 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 MET A 71 CA - CB - CG ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 74 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 GLY A 73 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 74 C - N - CA ANGL. DEV. = 26.4 DEGREES REMARK 500 PRO A 76 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 PRO A 76 N - CD - CG ANGL. DEV. = -9.3 DEGREES REMARK 500 TYR A 79 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 79 CG - CD1 - CE1 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR A 79 CG - CD2 - CE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 TYR A 79 CZ - CE2 - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR A 82 CZ - CE2 - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 83 CE3 - CZ3 - CH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP A 83 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 VAL A 190 CA - CB - CG2 ANGL. DEV. = -9.1 DEGREES REMARK 500 MET A 216 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 223 CD - NE - CZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 228 NH1 - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PHE A 238 CA - C - O ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 CYS B 72 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS B 113 CB - CA - C ANGL. DEV. = 7.9 DEGREES REMARK 500 TYR B 130 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP B 206 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 209 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 223 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 223 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 228 NE - CZ - NH1 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG B 228 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 254 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG B 254 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 4 CG - CD - NE ANGL. DEV. = 31.1 DEGREES REMARK 500 ARG C 50 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 58 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 GLY C 73 C - N - CA ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG C 92 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 92 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE C 145 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 GLU C 174 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 LYS C 218 CD - CE - NZ ANGL. DEV. = 42.3 DEGREES REMARK 500 ARG C 223 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG C 223 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 223 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG C 228 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 25 18.66 -140.61 REMARK 500 PRO A 109 -168.38 -72.70 REMARK 500 ASN B 22 76.26 -119.87 REMARK 500 ALA C 13 -150.30 61.62 REMARK 500 CYS C 72 -52.20 -123.19 REMARK 500 ALA C 110 -91.86 -4.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 249 MET A 250 141.03 REMARK 500 GLY C 73 ARG C 74 -135.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 417 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 880 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH C 490 DISTANCE = 5.77 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO8 B 701 DBREF 1SG4 A 1 260 UNP P42126 D3D2_HUMAN 43 302 DBREF 1SG4 B 1 260 UNP P42126 D3D2_HUMAN 43 302 DBREF 1SG4 C 1 260 UNP P42126 D3D2_HUMAN 43 302 SEQRES 1 A 260 GLY SER GLN ARG VAL LEU VAL GLU PRO ASP ALA GLY ALA SEQRES 2 A 260 GLY VAL ALA VAL MET LYS PHE LYS ASN PRO PRO VAL ASN SEQRES 3 A 260 SER LEU SER LEU GLU PHE LEU THR GLU LEU VAL ILE SER SEQRES 4 A 260 LEU GLU LYS LEU GLU ASN ASP LYS SER PHE ARG GLY VAL SEQRES 5 A 260 ILE LEU THR SER ASP ARG PRO GLY VAL PHE SER ALA GLY SEQRES 6 A 260 LEU ASP LEU THR GLU MET CYS GLY ARG SER PRO ALA HIS SEQRES 7 A 260 TYR ALA GLY TYR TRP LYS ALA VAL GLN GLU LEU TRP LEU SEQRES 8 A 260 ARG LEU TYR GLN SER ASN LEU VAL LEU VAL SER ALA ILE SEQRES 9 A 260 ASN GLY ALA CYS PRO ALA GLY GLY CYS LEU VAL ALA LEU SEQRES 10 A 260 THR CYS ASP TYR ARG ILE LEU ALA ASP ASN PRO ARG TYR SEQRES 11 A 260 CYS ILE GLY LEU ASN GLU THR GLN LEU GLY ILE ILE ALA SEQRES 12 A 260 PRO PHE TRP LEU LYS ASP THR LEU GLU ASN THR ILE GLY SEQRES 13 A 260 HIS ARG ALA ALA GLU ARG ALA LEU GLN LEU GLY LEU LEU SEQRES 14 A 260 PHE PRO PRO ALA GLU ALA LEU GLN VAL GLY ILE VAL ASP SEQRES 15 A 260 GLN VAL VAL PRO GLU GLU GLN VAL GLN SER THR ALA LEU SEQRES 16 A 260 SER ALA ILE ALA GLN TRP MET ALA ILE PRO ASP HIS ALA SEQRES 17 A 260 ARG GLN LEU THR LYS ALA MET MET ARG LYS ALA THR ALA SEQRES 18 A 260 SER ARG LEU VAL THR GLN ARG ASP ALA ASP VAL GLN ASN SEQRES 19 A 260 PHE VAL SER PHE ILE SER LYS ASP SER ILE GLN LYS SER SEQRES 20 A 260 LEU GLN MET TYR LEU GLU ARG LEU LYS GLU GLU LYS GLY SEQRES 1 B 260 GLY SER GLN ARG VAL LEU VAL GLU PRO ASP ALA GLY ALA SEQRES 2 B 260 GLY VAL ALA VAL MET LYS PHE LYS ASN PRO PRO VAL ASN SEQRES 3 B 260 SER LEU SER LEU GLU PHE LEU THR GLU LEU VAL ILE SER SEQRES 4 B 260 LEU GLU LYS LEU GLU ASN ASP LYS SER PHE ARG GLY VAL SEQRES 5 B 260 ILE LEU THR SER ASP ARG PRO GLY VAL PHE SER ALA GLY SEQRES 6 B 260 LEU ASP LEU THR GLU MET CYS GLY ARG SER PRO ALA HIS SEQRES 7 B 260 TYR ALA GLY TYR TRP LYS ALA VAL GLN GLU LEU TRP LEU SEQRES 8 B 260 ARG LEU TYR GLN SER ASN LEU VAL LEU VAL SER ALA ILE SEQRES 9 B 260 ASN GLY ALA CYS PRO ALA GLY GLY CYS LEU VAL ALA LEU SEQRES 10 B 260 THR CYS ASP TYR ARG ILE LEU ALA ASP ASN PRO ARG TYR SEQRES 11 B 260 CYS ILE GLY LEU ASN GLU THR GLN LEU GLY ILE ILE ALA SEQRES 12 B 260 PRO PHE TRP LEU LYS ASP THR LEU GLU ASN THR ILE GLY SEQRES 13 B 260 HIS ARG ALA ALA GLU ARG ALA LEU GLN LEU GLY LEU LEU SEQRES 14 B 260 PHE PRO PRO ALA GLU ALA LEU GLN VAL GLY ILE VAL ASP SEQRES 15 B 260 GLN VAL VAL PRO GLU GLU GLN VAL GLN SER THR ALA LEU SEQRES 16 B 260 SER ALA ILE ALA GLN TRP MET ALA ILE PRO ASP HIS ALA SEQRES 17 B 260 ARG GLN LEU THR LYS ALA MET MET ARG LYS ALA THR ALA SEQRES 18 B 260 SER ARG LEU VAL THR GLN ARG ASP ALA ASP VAL GLN ASN SEQRES 19 B 260 PHE VAL SER PHE ILE SER LYS ASP SER ILE GLN LYS SER SEQRES 20 B 260 LEU GLN MET TYR LEU GLU ARG LEU LYS GLU GLU LYS GLY SEQRES 1 C 260 GLY SER GLN ARG VAL LEU VAL GLU PRO ASP ALA GLY ALA SEQRES 2 C 260 GLY VAL ALA VAL MET LYS PHE LYS ASN PRO PRO VAL ASN SEQRES 3 C 260 SER LEU SER LEU GLU PHE LEU THR GLU LEU VAL ILE SER SEQRES 4 C 260 LEU GLU LYS LEU GLU ASN ASP LYS SER PHE ARG GLY VAL SEQRES 5 C 260 ILE LEU THR SER ASP ARG PRO GLY VAL PHE SER ALA GLY SEQRES 6 C 260 LEU ASP LEU THR GLU MET CYS GLY ARG SER PRO ALA HIS SEQRES 7 C 260 TYR ALA GLY TYR TRP LYS ALA VAL GLN GLU LEU TRP LEU SEQRES 8 C 260 ARG LEU TYR GLN SER ASN LEU VAL LEU VAL SER ALA ILE SEQRES 9 C 260 ASN GLY ALA CYS PRO ALA GLY GLY CYS LEU VAL ALA LEU SEQRES 10 C 260 THR CYS ASP TYR ARG ILE LEU ALA ASP ASN PRO ARG TYR SEQRES 11 C 260 CYS ILE GLY LEU ASN GLU THR GLN LEU GLY ILE ILE ALA SEQRES 12 C 260 PRO PHE TRP LEU LYS ASP THR LEU GLU ASN THR ILE GLY SEQRES 13 C 260 HIS ARG ALA ALA GLU ARG ALA LEU GLN LEU GLY LEU LEU SEQRES 14 C 260 PHE PRO PRO ALA GLU ALA LEU GLN VAL GLY ILE VAL ASP SEQRES 15 C 260 GLN VAL VAL PRO GLU GLU GLN VAL GLN SER THR ALA LEU SEQRES 16 C 260 SER ALA ILE ALA GLN TRP MET ALA ILE PRO ASP HIS ALA SEQRES 17 C 260 ARG GLN LEU THR LYS ALA MET MET ARG LYS ALA THR ALA SEQRES 18 C 260 SER ARG LEU VAL THR GLN ARG ASP ALA ASP VAL GLN ASN SEQRES 19 C 260 PHE VAL SER PHE ILE SER LYS ASP SER ILE GLN LYS SER SEQRES 20 C 260 LEU GLN MET TYR LEU GLU ARG LEU LYS GLU GLU LYS GLY HET CO8 B 701 57 HETNAM CO8 OCTANOYL-COENZYME A FORMUL 4 CO8 C29 H50 N7 O17 P3 S FORMUL 5 HOH *666(H2 O) HELIX 1 1 SER A 29 ASP A 46 1 18 HELIX 2 2 LEU A 68 CYS A 72 5 5 HELIX 3 3 SER A 75 GLN A 95 1 21 HELIX 4 4 PRO A 109 LEU A 117 1 9 HELIX 5 5 ASN A 135 GLY A 140 5 6 HELIX 6 6 PRO A 144 GLY A 156 1 13 HELIX 7 7 GLY A 156 GLY A 167 1 12 HELIX 8 8 PRO A 171 VAL A 178 1 8 HELIX 9 9 PRO A 186 GLU A 188 5 3 HELIX 10 10 GLN A 189 ALA A 203 1 15 HELIX 11 11 PRO A 205 THR A 226 1 22 HELIX 12 12 GLN A 227 SER A 240 1 14 HELIX 13 13 LYS A 241 GLN A 249 1 9 HELIX 14 14 SER B 29 ASP B 46 1 18 HELIX 15 15 ASP B 67 MET B 71 5 5 HELIX 16 16 SER B 75 GLN B 95 1 21 HELIX 17 17 PRO B 109 CYS B 119 1 11 HELIX 18 18 ASN B 135 GLY B 140 5 6 HELIX 19 19 PRO B 144 GLY B 156 1 13 HELIX 20 20 GLY B 156 GLY B 167 1 12 HELIX 21 21 PRO B 171 GLY B 179 1 9 HELIX 22 22 PRO B 186 GLU B 188 5 3 HELIX 23 23 GLN B 189 ALA B 203 1 15 HELIX 24 24 PRO B 205 THR B 226 1 22 HELIX 25 25 GLN B 227 LYS B 241 1 15 HELIX 26 26 LYS B 241 GLU B 258 1 18 HELIX 27 27 SER C 29 ASP C 46 1 18 HELIX 28 28 ASP C 67 MET C 71 5 5 HELIX 29 29 SER C 75 GLN C 95 1 21 HELIX 30 30 PRO C 109 CYS C 119 1 11 HELIX 31 31 ASN C 135 GLY C 140 5 6 HELIX 32 32 PRO C 144 GLY C 156 1 13 HELIX 33 33 GLY C 156 GLY C 167 1 12 HELIX 34 34 PRO C 171 GLY C 179 1 9 HELIX 35 35 PRO C 186 GLU C 188 5 3 HELIX 36 36 GLN C 189 ALA C 203 1 15 HELIX 37 37 PRO C 205 THR C 226 1 22 HELIX 38 38 GLN C 227 SER C 240 1 14 HELIX 39 39 LYS C 241 LEU C 252 1 12 SHEET 1 A 6 VAL A 5 ASP A 10 0 SHEET 2 A 6 VAL A 15 PHE A 20 -1 O LYS A 19 N LEU A 6 SHEET 3 A 6 GLY A 51 SER A 56 1 O ILE A 53 N MET A 18 SHEET 4 A 6 VAL A 99 ILE A 104 1 O ALA A 103 N LEU A 54 SHEET 5 A 6 TYR A 121 ALA A 125 1 O ILE A 123 N ILE A 104 SHEET 6 A 6 GLN A 183 VAL A 185 1 O GLN A 183 N LEU A 124 SHEET 1 B 2 SER A 27 LEU A 28 0 SHEET 2 B 2 GLY A 65 LEU A 66 1 O GLY A 65 N LEU A 28 SHEET 1 C 2 GLY A 60 VAL A 61 0 SHEET 2 C 2 GLY A 106 ALA A 107 1 O ALA A 107 N GLY A 60 SHEET 1 D 6 VAL B 5 ASP B 10 0 SHEET 2 D 6 VAL B 15 PHE B 20 -1 O LYS B 19 N LEU B 6 SHEET 3 D 6 GLY B 51 SER B 56 1 O ILE B 53 N MET B 18 SHEET 4 D 6 VAL B 99 ILE B 104 1 O VAL B 101 N LEU B 54 SHEET 5 D 6 TYR B 121 ALA B 125 1 O ILE B 123 N ILE B 104 SHEET 6 D 6 GLN B 183 VAL B 185 1 O GLN B 183 N LEU B 124 SHEET 1 E 2 GLY B 60 VAL B 61 0 SHEET 2 E 2 GLY B 106 ALA B 107 1 O ALA B 107 N GLY B 60 SHEET 1 F 6 VAL C 5 PRO C 9 0 SHEET 2 F 6 GLY C 14 PHE C 20 -1 O VAL C 17 N GLU C 8 SHEET 3 F 6 PHE C 49 SER C 56 1 O ILE C 53 N MET C 18 SHEET 4 F 6 VAL C 99 ILE C 104 1 O ALA C 103 N LEU C 54 SHEET 5 F 6 TYR C 121 ALA C 125 1 O ILE C 123 N ILE C 104 SHEET 6 F 6 GLN C 183 VAL C 185 1 O GLN C 183 N LEU C 124 SHEET 1 G 2 GLY C 60 VAL C 61 0 SHEET 2 G 2 GLY C 106 ALA C 107 1 O ALA C 107 N GLY C 60 CISPEP 1 PRO A 23 PRO A 24 0 2.69 CISPEP 2 PRO B 23 PRO B 24 0 5.63 CISPEP 3 PRO C 23 PRO C 24 0 3.80 SITE 1 AC1 16 PRO B 24 VAL B 25 VAL B 61 ALA B 64 SITE 2 AC1 16 LEU B 66 ASP B 67 LEU B 68 PRO B 109 SITE 3 AC1 16 ALA B 110 GLY B 111 ASN B 135 ILE B 142 SITE 4 AC1 16 TYR B 251 LEU B 255 LYS B 256 LYS B 259 CRYST1 100.984 78.288 113.209 90.00 116.39 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009903 0.000000 0.004914 0.00000 SCALE2 0.000000 0.012773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009861 0.00000