PDB Short entry for 1SKH HEADER UNKNOWN FUNCTION 05-MAR-04 1SKH TITLE N-TERMINAL (1-30) OF BOVINE PRION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-30); COMPND 5 SYNONYM: PRP, MAJOR SCRAPIE-ASSOCIATED FIBRIL PROTEIN 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS COIL-HELIX-COIL, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR H.BIVERSTAHL,A.ANDERSSON,A.GRASLUND,L.MALER REVDAT 3 02-MAR-22 1SKH 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SKH 1 VERSN REVDAT 1 01-MAR-05 1SKH 0 JRNL AUTH H.BIVERSTAHL,A.ANDERSSON,A.GRASLUND,L.MALER JRNL TITL NMR SOLUTION STRUCTURE AND MEMBRANE INTERACTION OF THE JRNL TITL 2 N-TERMINAL SEQUENCE (1-30) OF THE BOVINE PRION PROTEIN. JRNL REF BIOCHEMISTRY V. 43 14940 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15554701 JRNL DOI 10.1021/BI0485070 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX, DYANA 1.5 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SKH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021789. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 3.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM BOVINE PRP, 100 MM REMARK 210 DIHEXANOYL-SN-GLYCERO-3-PHOSPHATIDYLCHOLINE-D22 (DHPC), H2O, D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, DYANA 1.5 REMARK 210 METHOD USED : DYANA TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : A COMBINATION OF LEAST REMARK 210 CONSTRAINT VIOLATIONS AND DYANA REMARK 210 TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 5 56.29 -100.61 REMARK 500 1 LEU A 23 -59.08 -130.73 REMARK 500 1 CYS A 24 75.89 -103.17 REMARK 500 1 LYS A 25 -31.46 166.73 REMARK 500 1 ARG A 27 151.39 62.37 REMARK 500 2 LYS A 5 83.88 46.13 REMARK 500 2 VAL A 21 -94.77 -110.00 REMARK 500 2 LYS A 25 -97.63 -169.80 REMARK 500 2 ARG A 27 82.54 39.06 REMARK 500 3 VAL A 2 -152.90 -79.45 REMARK 500 3 LYS A 3 -105.21 -91.55 REMARK 500 3 LYS A 5 -30.02 164.13 REMARK 500 3 LEU A 23 61.96 -102.55 REMARK 500 3 CYS A 24 64.56 175.73 REMARK 500 3 LYS A 25 -30.04 164.21 REMARK 500 3 ARG A 27 155.47 59.50 REMARK 500 4 VAL A 2 -102.32 61.33 REMARK 500 4 LYS A 3 75.73 78.96 REMARK 500 4 SER A 4 -26.95 160.13 REMARK 500 4 LEU A 23 59.90 -106.27 REMARK 500 4 LYS A 25 -11.43 87.45 REMARK 500 4 LYS A 26 -103.36 -77.25 REMARK 500 5 VAL A 2 -102.07 64.05 REMARK 500 5 LYS A 3 88.56 84.33 REMARK 500 5 SER A 4 -26.99 160.02 REMARK 500 5 CYS A 24 -36.17 174.12 REMARK 500 5 LYS A 26 -103.08 -88.73 REMARK 500 5 LYS A 29 90.22 -178.91 REMARK 500 6 VAL A 2 -103.57 60.02 REMARK 500 6 LYS A 3 -29.57 163.53 REMARK 500 6 SER A 4 -90.55 -105.17 REMARK 500 6 LYS A 5 61.09 169.83 REMARK 500 6 LEU A 23 57.63 -99.68 REMARK 500 6 LYS A 26 87.67 42.87 REMARK 500 6 LYS A 29 88.85 64.98 REMARK 500 7 VAL A 2 167.71 64.92 REMARK 500 7 SER A 4 -27.58 161.22 REMARK 500 7 LYS A 5 71.08 44.73 REMARK 500 7 ILE A 6 -103.05 -119.77 REMARK 500 7 TRP A 9 -71.45 -68.36 REMARK 500 7 LYS A 25 47.14 -152.28 REMARK 500 8 SER A 4 -33.27 171.48 REMARK 500 8 LYS A 5 -9.90 86.43 REMARK 500 8 CYS A 24 -100.71 -95.97 REMARK 500 8 ARG A 27 78.92 52.94 REMARK 500 9 SER A 4 -26.96 160.08 REMARK 500 9 ILE A 6 -102.10 -73.16 REMARK 500 9 LYS A 25 -36.21 176.58 REMARK 500 9 LYS A 26 -104.08 -69.40 REMARK 500 9 ARG A 27 155.49 -39.50 REMARK 500 REMARK 500 THIS ENTRY HAS 131 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1SKH A 1 30 UNP Q01880 PRIO2_BOVIN 1 30 SEQADV 1SKH LYS A 5 UNP Q01880 HIS 5 CONFLICT SEQRES 1 A 30 MET VAL LYS SER LYS ILE GLY SER TRP ILE LEU VAL LEU SEQRES 2 A 30 PHE VAL ALA MET TRP SER ASP VAL GLY LEU CYS LYS LYS SEQRES 3 A 30 ARG PRO LYS PRO HELIX 1 1 SER A 8 GLY A 22 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000