PDB Short entry for 1T5H HEADER LIGASE 04-MAY-04 1T5H TITLE 4-CHLOROBENZOYL-COA LIGASE/SYNTHETASE UNLIGANDED, SELENOMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-CHLOROBENZOYL COA LIGASE; COMPND 3 CHAIN: X; COMPND 4 EC: 6.2.1.33; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES SP. AL3007; SOURCE 3 ORGANISM_TAXID: 206162; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE70 KEYWDS ADENYLATE-FORMING COENZYME A LIGASE DOMAIN ALTERNATION CONFORMATIONAL KEYWDS 2 CHANGE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK,X.LU,D.DUNAWAY-MARIANO REVDAT 4 11-OCT-17 1T5H 1 REMARK REVDAT 3 13-JUL-11 1T5H 1 VERSN REVDAT 2 24-FEB-09 1T5H 1 VERSN REVDAT 1 03-AUG-04 1T5H 0 JRNL AUTH A.M.GULICK,X.LU,D.DUNAWAY-MARIANO JRNL TITL CRYSTAL STRUCTURE OF 4-CHLOROBENZOATE:COA LIGASE/SYNTHETASE JRNL TITL 2 IN THE UNLIGANDED AND ARYL SUBSTRATE-BOUND STATES JRNL REF BIOCHEMISTRY V. 43 8670 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15236575 JRNL DOI 10.1021/BI049384M REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 39426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3807 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5185 ; 1.062 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 5.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2887 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1574 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.152 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2479 ; 0.415 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3970 ; 0.814 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 1.506 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1215 ; 2.470 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 401 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2496 91.3084 12.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.0585 REMARK 3 T33: 0.1139 T12: -0.0283 REMARK 3 T13: 0.0194 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.8231 L22: 0.7306 REMARK 3 L33: 1.9072 L12: 0.0047 REMARK 3 L13: -0.2476 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.0450 S13: -0.1692 REMARK 3 S21: 0.0365 S22: 0.0049 S23: 0.0623 REMARK 3 S31: 0.2675 S32: -0.2144 S33: 0.0390 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 402 X 503 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3729 77.1690 39.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0498 REMARK 3 T33: 0.0131 T12: -0.0188 REMARK 3 T13: -0.0035 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.4025 L22: 3.2810 REMARK 3 L33: 2.5628 L12: -1.1470 REMARK 3 L13: -1.3180 L23: 0.6869 REMARK 3 S TENSOR REMARK 3 S11: -0.0741 S12: 0.3078 S13: -0.0647 REMARK 3 S21: -0.0048 S22: 0.0407 S23: 0.2210 REMARK 3 S31: -0.0005 S32: -0.1210 S33: 0.0334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.950038 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6-8% PEG 4000; 10% GLYCEROL; 0.25 M REMARK 280 CACL2; 50 MM CHES, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.00067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.00033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.00033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.00067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 216.46998 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.00033 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X1140 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 110 REMARK 465 ARG X 111 REMARK 465 GLY X 163 REMARK 465 THR X 164 REMARK 465 THR X 165 REMARK 465 SER X 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X 87 CG CD NE CZ NH1 NH2 REMARK 470 VAL X 109 CG1 CG2 REMARK 470 GLN X 112 CG CD OE1 NE2 REMARK 470 VAL X 113 CG1 CG2 REMARK 470 ASP X 115 CG OD1 OD2 REMARK 470 PHE X 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN X 149 CG CD OE1 NE2 REMARK 470 SER X 162 OG REMARK 470 ASN X 347 CG OD1 ND2 REMARK 470 ASN X 491 CG OD1 ND2 REMARK 470 LYS X 492 CG CD CE NZ REMARK 470 ARG X 496 CG CD NE CZ NH1 NH2 REMARK 470 GLN X 500 CG CD OE1 NE2 REMARK 470 SER X 503 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 272 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP X 378 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL X 214 -70.80 -113.16 REMARK 500 MSE X 310 -128.21 57.80 REMARK 500 PHE X 329 -32.02 83.20 REMARK 500 SER X 358 -155.92 -99.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 999 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN X 484 OE1 REMARK 620 2 ASP X 483 OD1 91.9 REMARK 620 3 ASP X 483 OD2 90.8 48.4 REMARK 620 4 HOH X1067 O 88.0 163.6 148.0 REMARK 620 5 HOH X1183 O 79.7 81.9 129.2 82.0 REMARK 620 6 HOH X1184 O 154.0 80.5 102.1 92.5 74.7 REMARK 620 7 ASP X 472 OD2 127.9 113.1 76.3 79.3 145.6 77.5 REMARK 620 8 ASP X 472 OD1 77.5 119.3 71.8 76.7 149.0 127.9 50.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PG4 RELATED DB: PDB REMARK 900 SALMONELLA ACETYL-COA SYNTHETASE REMARK 900 RELATED ID: 1RY2 RELATED DB: PDB REMARK 900 YEAST ACETYL-COA SYNTHETASE REMARK 900 RELATED ID: 1AMU RELATED DB: PDB REMARK 900 PHENYLALANINE ACTIVIATING DOMAIN OF GRSA REMARK 900 RELATED ID: 1MDB RELATED DB: PDB REMARK 900 BACILLUS SUBTILLIS DHBE REMARK 900 RELATED ID: 1T5D RELATED DB: PDB DBREF 1T5H X 1 504 UNP Q8GN86 Q8GN86_9BURK 1 501 SEQADV 1T5H MSE X 1 UNP Q8GN86 MET 1 MODIFIED RESIDUE SEQADV 1T5H MSE X 7 UNP Q8GN86 MET 7 MODIFIED RESIDUE SEQADV 1T5H ALA X 43 UNP Q8GN86 SEE REMARK 999 SEQADV 1T5H ARG X 45 UNP Q8GN86 GLY 44 SEE REMARK 999 SEQADV 1T5H GLY X 78 UNP Q8GN86 SEE REMARK 999 SEQADV 1T5H MSE X 102 UNP Q8GN86 MET 100 MODIFIED RESIDUE SEQADV 1T5H GLU X 151 UNP Q8GN86 ASP 149 SEE REMARK 999 SEQADV 1T5H PRO X 152 UNP Q8GN86 ALA 150 SEE REMARK 999 SEQADV 1T5H MSE X 185 UNP Q8GN86 MET 183 MODIFIED RESIDUE SEQADV 1T5H MSE X 203 UNP Q8GN86 MET 201 MODIFIED RESIDUE SEQADV 1T5H ALA X 259 UNP Q8GN86 SEE REMARK 999 SEQADV 1T5H MSE X 284 UNP Q8GN86 MET 281 MODIFIED RESIDUE SEQADV 1T5H MSE X 310 UNP Q8GN86 MET 307 MODIFIED RESIDUE SEQADV 1T5H MSE X 315 UNP Q8GN86 MET 312 MODIFIED RESIDUE SEQADV 1T5H GLN X 317 UNP Q8GN86 HIS 314 SEE REMARK 999 SEQADV 1T5H PRO X 318 UNP Q8GN86 ALA 315 SEE REMARK 999 SEQADV 1T5H MSE X 324 UNP Q8GN86 MET 321 MODIFIED RESIDUE SEQADV 1T5H MSE X 404 UNP Q8GN86 MET 401 MODIFIED RESIDUE SEQADV 1T5H THR X 428 UNP Q8GN86 ALA 425 SEE REMARK 999 SEQADV 1T5H GLN X 497 UNP Q8GN86 HIS 494 SEE REMARK 999 SEQADV 1T5H LEU X 498 UNP Q8GN86 VAL 495 SEE REMARK 999 SEQRES 1 X 504 MSE GLN THR VAL ASN GLU MSE LEU ARG ARG ALA ALA THR SEQRES 2 X 504 ARG ALA PRO ASP HIS CYS ALA LEU ALA VAL PRO ALA ARG SEQRES 3 X 504 GLY LEU ARG LEU THR HIS ALA GLU LEU ARG ALA ARG VAL SEQRES 4 X 504 GLU ALA VAL ALA ALA ARG LEU HIS ALA ASP GLY LEU ARG SEQRES 5 X 504 PRO GLN GLN ARG VAL ALA VAL VAL ALA PRO ASN SER ALA SEQRES 6 X 504 ASP VAL VAL ILE ALA ILE LEU ALA LEU HIS ARG LEU GLY SEQRES 7 X 504 ALA VAL PRO ALA LEU LEU ASN PRO ARG LEU LYS SER ALA SEQRES 8 X 504 GLU LEU ALA GLU LEU ILE LYS ARG GLY GLU MSE THR ALA SEQRES 9 X 504 ALA VAL ILE ALA VAL GLY ARG GLN VAL ALA ASP ALA ILE SEQRES 10 X 504 PHE GLN SER GLY SER GLY ALA ARG ILE ILE PHE LEU GLY SEQRES 11 X 504 ASP LEU VAL ARG ASP GLY GLU PRO TYR SER TYR GLY PRO SEQRES 12 X 504 PRO ILE GLU ASP PRO GLN ARG GLU PRO ALA GLN PRO ALA SEQRES 13 X 504 PHE ILE PHE TYR THR SER GLY THR THR GLY LEU PRO LYS SEQRES 14 X 504 ALA ALA ILE ILE PRO GLN ARG ALA ALA GLU SER ARG VAL SEQRES 15 X 504 LEU PHE MSE SER THR GLN VAL GLY LEU ARG HIS GLY ARG SEQRES 16 X 504 HIS ASN VAL VAL LEU GLY LEU MSE PRO LEU TYR HIS VAL SEQRES 17 X 504 VAL GLY PHE PHE ALA VAL LEU VAL ALA ALA LEU ALA LEU SEQRES 18 X 504 ASP GLY THR TYR VAL VAL VAL GLU GLU PHE ARG PRO VAL SEQRES 19 X 504 ASP ALA LEU GLN LEU VAL GLN GLN GLU GLN VAL THR SER SEQRES 20 X 504 LEU PHE ALA THR PRO THR HIS LEU ASP ALA LEU ALA ALA SEQRES 21 X 504 ALA ALA ALA HIS ALA GLY SER SER LEU LYS LEU ASP SER SEQRES 22 X 504 LEU ARG HIS VAL THR PHE ALA GLY ALA THR MSE PRO ASP SEQRES 23 X 504 ALA VAL LEU GLU THR VAL HIS GLN HIS LEU PRO GLY GLU SEQRES 24 X 504 LYS VAL ASN ILE TYR GLY THR THR GLU ALA MSE ASN SER SEQRES 25 X 504 LEU TYR MSE ARG GLN PRO LYS THR GLY THR GLU MSE ALA SEQRES 26 X 504 PRO GLY PHE PHE SER GLU VAL ARG ILE VAL ARG ILE GLY SEQRES 27 X 504 GLY GLY VAL ASP GLU ILE VAL ALA ASN GLY GLU GLU GLY SEQRES 28 X 504 GLU LEU ILE VAL ALA ALA SER ASP SER ALA PHE VAL GLY SEQRES 29 X 504 TYR LEU ASN GLN PRO GLN ALA THR ALA GLU LYS LEU GLN SEQRES 30 X 504 ASP GLY TRP TYR ARG THR SER ASP VAL ALA VAL TRP THR SEQRES 31 X 504 PRO GLU GLY THR VAL ARG ILE LEU GLY ARG VAL ASP ASP SEQRES 32 X 504 MSE ILE ILE SER GLY GLY GLU ASN ILE HIS PRO SER GLU SEQRES 33 X 504 ILE GLU ARG VAL LEU GLY THR ALA PRO GLY VAL THR GLU SEQRES 34 X 504 VAL VAL VAL ILE GLY LEU ALA ASP GLN ARG TRP GLY GLN SEQRES 35 X 504 SER VAL THR ALA CYS VAL VAL PRO ARG LEU GLY GLU THR SEQRES 36 X 504 LEU SER ALA ASP ALA LEU ASP THR PHE CYS ARG SER SER SEQRES 37 X 504 GLU LEU ALA ASP PHE LYS ARG PRO LYS ARG TYR PHE ILE SEQRES 38 X 504 LEU ASP GLN LEU PRO LYS ASN ALA LEU ASN LYS VAL LEU SEQRES 39 X 504 ARG ARG GLN LEU VAL GLN GLN VAL SER SER MODRES 1T5H MSE X 1 MET SELENOMETHIONINE MODRES 1T5H MSE X 7 MET SELENOMETHIONINE MODRES 1T5H MSE X 102 MET SELENOMETHIONINE MODRES 1T5H MSE X 185 MET SELENOMETHIONINE MODRES 1T5H MSE X 203 MET SELENOMETHIONINE MODRES 1T5H MSE X 284 MET SELENOMETHIONINE MODRES 1T5H MSE X 310 MET SELENOMETHIONINE MODRES 1T5H MSE X 315 MET SELENOMETHIONINE MODRES 1T5H MSE X 324 MET SELENOMETHIONINE MODRES 1T5H MSE X 404 MET SELENOMETHIONINE HET MSE X 1 8 HET MSE X 7 8 HET MSE X 102 8 HET MSE X 185 8 HET MSE X 203 8 HET MSE X 284 8 HET MSE X 310 8 HET MSE X 315 8 HET MSE X 324 8 HET MSE X 404 8 HET CA X 999 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 HOH *340(H2 O) HELIX 1 1 THR X 3 ALA X 15 1 13 HELIX 2 2 HIS X 32 ASP X 49 1 18 HELIX 3 3 SER X 64 GLY X 78 1 15 HELIX 4 4 LYS X 89 GLY X 100 1 12 HELIX 5 5 GLN X 112 GLY X 121 1 10 HELIX 6 6 ALA X 177 GLN X 188 1 12 HELIX 7 7 HIS X 207 PHE X 212 1 6 HELIX 8 8 VAL X 214 LEU X 221 1 8 HELIX 9 9 ARG X 232 GLN X 244 1 13 HELIX 10 10 THR X 251 ALA X 263 1 13 HELIX 11 11 PRO X 285 LEU X 296 1 12 HELIX 12 12 GLN X 368 LYS X 375 1 8 HELIX 13 13 ASP X 402 MSE X 404 5 3 HELIX 14 14 HIS X 413 GLY X 422 1 10 HELIX 15 15 SER X 457 SER X 467 1 11 HELIX 16 16 ALA X 471 ARG X 475 5 5 HELIX 17 17 LEU X 494 SER X 503 1 10 SHEET 1 A 8 LEU X 28 THR X 31 0 SHEET 2 A 8 CYS X 19 VAL X 23 -1 N VAL X 23 O LEU X 28 SHEET 3 A 8 THR X 224 VAL X 227 1 O TYR X 225 N ALA X 20 SHEET 4 A 8 VAL X 198 GLY X 201 1 N VAL X 199 O THR X 224 SHEET 5 A 8 SER X 247 PHE X 249 1 O SER X 247 N LEU X 200 SHEET 6 A 8 HIS X 276 PHE X 279 1 O THR X 278 N LEU X 248 SHEET 7 A 8 GLU X 299 THR X 306 1 O GLU X 299 N VAL X 277 SHEET 8 A 8 MSE X 310 ARG X 316 -1 O LEU X 313 N TYR X 304 SHEET 1 B 6 ARG X 125 PHE X 128 0 SHEET 2 B 6 ALA X 104 ILE X 107 1 N ALA X 105 O ILE X 127 SHEET 3 B 6 ARG X 56 VAL X 60 1 N ALA X 58 O VAL X 106 SHEET 4 B 6 VAL X 80 LEU X 84 1 O LEU X 84 N VAL X 59 SHEET 5 B 6 PRO X 155 TYR X 160 1 O ILE X 158 N PRO X 81 SHEET 6 B 6 ALA X 170 PRO X 174 -1 O ILE X 173 N PHE X 157 SHEET 1 C 2 VAL X 133 ARG X 134 0 SHEET 2 C 2 GLU X 137 PRO X 138 -1 O GLU X 137 N ARG X 134 SHEET 1 D 5 GLU X 323 MSE X 324 0 SHEET 2 D 5 VAL X 395 ARG X 400 -1 O VAL X 395 N MSE X 324 SHEET 3 D 5 TRP X 380 TRP X 389 -1 N VAL X 386 O GLY X 399 SHEET 4 D 5 GLY X 351 ALA X 356 -1 N VAL X 355 O TYR X 381 SHEET 5 D 5 VAL X 332 VAL X 335 -1 N ARG X 333 O ILE X 354 SHEET 1 E 4 GLU X 323 MSE X 324 0 SHEET 2 E 4 VAL X 395 ARG X 400 -1 O VAL X 395 N MSE X 324 SHEET 3 E 4 TRP X 380 TRP X 389 -1 N VAL X 386 O GLY X 399 SHEET 4 E 4 LEU X 376 GLN X 377 -1 N GLN X 377 O TRP X 380 SHEET 1 F 2 ILE X 405 SER X 407 0 SHEET 2 F 2 GLU X 410 ILE X 412 -1 O ILE X 412 N ILE X 405 SHEET 1 G 3 VAL X 427 ALA X 436 0 SHEET 2 G 3 GLN X 442 PRO X 450 -1 O CYS X 447 N VAL X 431 SHEET 3 G 3 ARG X 478 ILE X 481 1 O ARG X 478 N ALA X 446 LINK C MSE X 1 N GLN X 2 1555 1555 1.33 LINK C GLU X 6 N MSE X 7 1555 1555 1.33 LINK C MSE X 7 N LEU X 8 1555 1555 1.33 LINK C GLU X 101 N MSE X 102 1555 1555 1.33 LINK C MSE X 102 N THR X 103 1555 1555 1.33 LINK C PHE X 184 N MSE X 185 1555 1555 1.33 LINK C MSE X 185 N SER X 186 1555 1555 1.33 LINK C LEU X 202 N MSE X 203 1555 1555 1.33 LINK C MSE X 203 N PRO X 204 1555 1555 1.34 LINK C THR X 283 N MSE X 284 1555 1555 1.33 LINK C MSE X 284 N PRO X 285 1555 1555 1.34 LINK C ALA X 309 N MSE X 310 1555 1555 1.33 LINK C MSE X 310 N ASN X 311 1555 1555 1.33 LINK C TYR X 314 N MSE X 315 1555 1555 1.33 LINK C MSE X 315 N ARG X 316 1555 1555 1.33 LINK C GLU X 323 N MSE X 324 1555 1555 1.34 LINK C MSE X 324 N ALA X 325 1555 1555 1.33 LINK C ASP X 403 N MSE X 404 1555 1555 1.33 LINK C MSE X 404 N ILE X 405 1555 1555 1.33 LINK CA CA X 999 OE1 GLN X 484 1555 1555 2.27 LINK CA CA X 999 OD1 ASP X 483 1555 1555 2.65 LINK CA CA X 999 OD2 ASP X 483 1555 1555 2.55 LINK CA CA X 999 O HOH X1067 1555 1555 2.51 LINK CA CA X 999 O HOH X1183 1555 1555 2.53 LINK CA CA X 999 O HOH X1184 1555 1555 2.45 LINK CA CA X 999 OD2 ASP X 472 1555 2664 2.46 LINK CA CA X 999 OD1 ASP X 472 1555 2664 2.56 SITE 1 AC1 6 ASP X 472 ASP X 483 GLN X 484 HOH X1067 SITE 2 AC1 6 HOH X1183 HOH X1184 CRYST1 124.979 124.979 69.001 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008001 0.004620 0.000000 0.00000 SCALE2 0.000000 0.009239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014493 0.00000 HETATM 1 N MSE X 1 -33.181 107.879 7.295 1.00 20.99 N HETATM 2 CA MSE X 1 -32.339 106.711 7.689 1.00 20.48 C HETATM 3 C MSE X 1 -31.825 105.982 6.449 1.00 19.44 C HETATM 4 O MSE X 1 -32.483 105.969 5.411 1.00 19.45 O HETATM 5 CB MSE X 1 -33.147 105.760 8.584 1.00 21.36 C HETATM 6 CG MSE X 1 -33.093 104.291 8.156 1.00 22.61 C HETATM 7 SE MSE X 1 -34.693 103.329 8.562 1.00 30.73 SE HETATM 8 CE MSE X 1 -35.835 103.821 7.060 1.00 25.79 C