PDB Short entry for 1T8Z HEADER MEMBRANE PROTEIN 13-MAY-04 1T8Z TITLE ATOMIC STRUCTURE OF A NOVEL TRYPTOPHAN-ZIPPER PENTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR OUTER MEMBRANE LIPOPROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: MUREIN-LIPOPROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LPP, MLPA, MULI, B1677, C2072, Z2705, ECS2384, SF1706, S1839; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LIPOPROTEIN, PROTEIN FOLDING, COILED COIL, PENTAMER, TRYPTOPHAN- KEYWDS 2 ZIPPER, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,W.YONG,Y.DENG,N.R.KALLENBACH,M.LU REVDAT 4 14-FEB-24 1T8Z 1 REMARK REVDAT 3 27-OCT-21 1T8Z 1 REMARK SEQADV REVDAT 2 24-FEB-09 1T8Z 1 VERSN REVDAT 1 23-NOV-04 1T8Z 0 JRNL AUTH J.LIU,W.YONG,Y.DENG,N.R.KALLENBACH,M.LU JRNL TITL ATOMIC STRUCTURE OF A TRYPTOPHAN-ZIPPER PENTAMER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 16156 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15520380 JRNL DOI 10.1073/PNAS.0405319101 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 37022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2266 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2342 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -1.80000 REMARK 3 B12 (A**2) : 1.78000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : -1.21000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.582 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2519 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3466 ; 1.741 ; 1.740 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 4.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2113 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1089 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1234 ; 1.402 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1945 ; 2.579 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1285 ; 3.546 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1521 ; 4.927 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38990 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 70.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, TRIS-HCL, AMMONIUM SULFATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A PENTAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER C 1 REMARK 465 SER C 2 REMARK 465 SER D 1 REMARK 465 SER D 2 REMARK 465 ASN D 3 REMARK 465 ALA D 4 REMARK 465 LYS D 5 REMARK 465 TRP D 6 REMARK 465 SER E 1 REMARK 465 SER E 2 REMARK 465 ASN E 3 REMARK 465 THR E 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 61 O HOH B 80 2.17 REMARK 500 OE1 GLN E 46 O HOH E 1036 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OXT THR B 53 NZ LYS E 5 1566 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 20 CB TRP A 20 CG 0.122 REMARK 500 TRP D 27 CB TRP D 27 CG 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 39 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP D 7 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 LYS D 38 CD - CE - NZ ANGL. DEV. = 18.5 DEGREES REMARK 500 ASP E 7 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12P E 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EQ7 RELATED DB: PDB REMARK 900 WILD TYPE DBREF 1T8Z A 1 53 UNP P69776 LPP_ECOLI 22 74 DBREF 1T8Z B 1 53 UNP P69776 LPP_ECOLI 22 74 DBREF 1T8Z C 1 53 UNP P69776 LPP_ECOLI 22 74 DBREF 1T8Z D 1 53 UNP P69776 LPP_ECOLI 22 74 DBREF 1T8Z E 1 53 UNP P69776 LPP_ECOLI 22 74 SEQADV 1T8Z TRP A 6 UNP P69776 ILE 27 ENGINEERED MUTATION SEQADV 1T8Z TRP A 9 UNP P69776 LEU 30 ENGINEERED MUTATION SEQADV 1T8Z TRP A 13 UNP P69776 VAL 34 ENGINEERED MUTATION SEQADV 1T8Z TRP A 16 UNP P69776 LEU 37 ENGINEERED MUTATION SEQADV 1T8Z TRP A 20 UNP P69776 VAL 41 ENGINEERED MUTATION SEQADV 1T8Z TRP A 23 UNP P69776 LEU 44 ENGINEERED MUTATION SEQADV 1T8Z TRP A 27 UNP P69776 VAL 48 ENGINEERED MUTATION SEQADV 1T8Z TRP A 30 UNP P69776 MET 51 ENGINEERED MUTATION SEQADV 1T8Z TRP A 34 UNP P69776 VAL 55 ENGINEERED MUTATION SEQADV 1T8Z TRP A 37 UNP P69776 ALA 58 ENGINEERED MUTATION SEQADV 1T8Z TRP A 41 UNP P69776 ALA 62 ENGINEERED MUTATION SEQADV 1T8Z TRP A 44 UNP P69776 ALA 65 ENGINEERED MUTATION SEQADV 1T8Z TRP A 48 UNP P69776 LEU 69 ENGINEERED MUTATION SEQADV 1T8Z TRP A 51 UNP P69776 MET 72 ENGINEERED MUTATION SEQADV 1T8Z TRP B 6 UNP P69776 ILE 27 ENGINEERED MUTATION SEQADV 1T8Z TRP B 9 UNP P69776 LEU 30 ENGINEERED MUTATION SEQADV 1T8Z TRP B 13 UNP P69776 VAL 34 ENGINEERED MUTATION SEQADV 1T8Z TRP B 16 UNP P69776 LEU 37 ENGINEERED MUTATION SEQADV 1T8Z TRP B 20 UNP P69776 VAL 41 ENGINEERED MUTATION SEQADV 1T8Z TRP B 23 UNP P69776 LEU 44 ENGINEERED MUTATION SEQADV 1T8Z TRP B 27 UNP P69776 VAL 48 ENGINEERED MUTATION SEQADV 1T8Z TRP B 30 UNP P69776 MET 51 ENGINEERED MUTATION SEQADV 1T8Z TRP B 34 UNP P69776 VAL 55 ENGINEERED MUTATION SEQADV 1T8Z TRP B 37 UNP P69776 ALA 58 ENGINEERED MUTATION SEQADV 1T8Z TRP B 41 UNP P69776 ALA 62 ENGINEERED MUTATION SEQADV 1T8Z TRP B 44 UNP P69776 ALA 65 ENGINEERED MUTATION SEQADV 1T8Z TRP B 48 UNP P69776 LEU 69 ENGINEERED MUTATION SEQADV 1T8Z TRP B 51 UNP P69776 MET 72 ENGINEERED MUTATION SEQADV 1T8Z TRP C 6 UNP P69776 ILE 27 ENGINEERED MUTATION SEQADV 1T8Z TRP C 9 UNP P69776 LEU 30 ENGINEERED MUTATION SEQADV 1T8Z TRP C 13 UNP P69776 VAL 34 ENGINEERED MUTATION SEQADV 1T8Z TRP C 16 UNP P69776 LEU 37 ENGINEERED MUTATION SEQADV 1T8Z TRP C 20 UNP P69776 VAL 41 ENGINEERED MUTATION SEQADV 1T8Z TRP C 23 UNP P69776 LEU 44 ENGINEERED MUTATION SEQADV 1T8Z TRP C 27 UNP P69776 VAL 48 ENGINEERED MUTATION SEQADV 1T8Z TRP C 30 UNP P69776 MET 51 ENGINEERED MUTATION SEQADV 1T8Z TRP C 34 UNP P69776 VAL 55 ENGINEERED MUTATION SEQADV 1T8Z TRP C 37 UNP P69776 ALA 58 ENGINEERED MUTATION SEQADV 1T8Z TRP C 41 UNP P69776 ALA 62 ENGINEERED MUTATION SEQADV 1T8Z TRP C 44 UNP P69776 ALA 65 ENGINEERED MUTATION SEQADV 1T8Z TRP C 48 UNP P69776 LEU 69 ENGINEERED MUTATION SEQADV 1T8Z TRP C 51 UNP P69776 MET 72 ENGINEERED MUTATION SEQADV 1T8Z TRP D 6 UNP P69776 ILE 27 ENGINEERED MUTATION SEQADV 1T8Z TRP D 9 UNP P69776 LEU 30 ENGINEERED MUTATION SEQADV 1T8Z TRP D 13 UNP P69776 VAL 34 ENGINEERED MUTATION SEQADV 1T8Z TRP D 16 UNP P69776 LEU 37 ENGINEERED MUTATION SEQADV 1T8Z TRP D 20 UNP P69776 VAL 41 ENGINEERED MUTATION SEQADV 1T8Z TRP D 23 UNP P69776 LEU 44 ENGINEERED MUTATION SEQADV 1T8Z TRP D 27 UNP P69776 VAL 48 ENGINEERED MUTATION SEQADV 1T8Z TRP D 30 UNP P69776 MET 51 ENGINEERED MUTATION SEQADV 1T8Z TRP D 34 UNP P69776 VAL 55 ENGINEERED MUTATION SEQADV 1T8Z TRP D 37 UNP P69776 ALA 58 ENGINEERED MUTATION SEQADV 1T8Z TRP D 41 UNP P69776 ALA 62 ENGINEERED MUTATION SEQADV 1T8Z TRP D 44 UNP P69776 ALA 65 ENGINEERED MUTATION SEQADV 1T8Z TRP D 48 UNP P69776 LEU 69 ENGINEERED MUTATION SEQADV 1T8Z TRP D 51 UNP P69776 MET 72 ENGINEERED MUTATION SEQADV 1T8Z TRP E 6 UNP P69776 ILE 27 ENGINEERED MUTATION SEQADV 1T8Z TRP E 9 UNP P69776 LEU 30 ENGINEERED MUTATION SEQADV 1T8Z TRP E 13 UNP P69776 VAL 34 ENGINEERED MUTATION SEQADV 1T8Z TRP E 16 UNP P69776 LEU 37 ENGINEERED MUTATION SEQADV 1T8Z TRP E 20 UNP P69776 VAL 41 ENGINEERED MUTATION SEQADV 1T8Z TRP E 23 UNP P69776 LEU 44 ENGINEERED MUTATION SEQADV 1T8Z TRP E 27 UNP P69776 VAL 48 ENGINEERED MUTATION SEQADV 1T8Z TRP E 30 UNP P69776 MET 51 ENGINEERED MUTATION SEQADV 1T8Z TRP E 34 UNP P69776 VAL 55 ENGINEERED MUTATION SEQADV 1T8Z TRP E 37 UNP P69776 ALA 58 ENGINEERED MUTATION SEQADV 1T8Z TRP E 41 UNP P69776 ALA 62 ENGINEERED MUTATION SEQADV 1T8Z TRP E 44 UNP P69776 ALA 65 ENGINEERED MUTATION SEQADV 1T8Z TRP E 48 UNP P69776 LEU 69 ENGINEERED MUTATION SEQADV 1T8Z TRP E 51 UNP P69776 MET 72 ENGINEERED MUTATION SEQRES 1 A 53 SER SER ASN ALA LYS TRP ASP GLN TRP SER SER ASP TRP SEQRES 2 A 53 GLN THR TRP ASN ALA LYS TRP ASP GLN TRP SER ASN ASP SEQRES 3 A 53 TRP ASN ALA TRP ARG SER ASP TRP GLN ALA TRP LYS ASP SEQRES 4 A 53 ASP TRP ALA ARG TRP ASN GLN ARG TRP ASP ASN TRP ALA SEQRES 5 A 53 THR SEQRES 1 B 53 SER SER ASN ALA LYS TRP ASP GLN TRP SER SER ASP TRP SEQRES 2 B 53 GLN THR TRP ASN ALA LYS TRP ASP GLN TRP SER ASN ASP SEQRES 3 B 53 TRP ASN ALA TRP ARG SER ASP TRP GLN ALA TRP LYS ASP SEQRES 4 B 53 ASP TRP ALA ARG TRP ASN GLN ARG TRP ASP ASN TRP ALA SEQRES 5 B 53 THR SEQRES 1 C 53 SER SER ASN ALA LYS TRP ASP GLN TRP SER SER ASP TRP SEQRES 2 C 53 GLN THR TRP ASN ALA LYS TRP ASP GLN TRP SER ASN ASP SEQRES 3 C 53 TRP ASN ALA TRP ARG SER ASP TRP GLN ALA TRP LYS ASP SEQRES 4 C 53 ASP TRP ALA ARG TRP ASN GLN ARG TRP ASP ASN TRP ALA SEQRES 5 C 53 THR SEQRES 1 D 53 SER SER ASN ALA LYS TRP ASP GLN TRP SER SER ASP TRP SEQRES 2 D 53 GLN THR TRP ASN ALA LYS TRP ASP GLN TRP SER ASN ASP SEQRES 3 D 53 TRP ASN ALA TRP ARG SER ASP TRP GLN ALA TRP LYS ASP SEQRES 4 D 53 ASP TRP ALA ARG TRP ASN GLN ARG TRP ASP ASN TRP ALA SEQRES 5 D 53 THR SEQRES 1 E 53 SER SER ASN ALA LYS TRP ASP GLN TRP SER SER ASP TRP SEQRES 2 E 53 GLN THR TRP ASN ALA LYS TRP ASP GLN TRP SER ASN ASP SEQRES 3 E 53 TRP ASN ALA TRP ARG SER ASP TRP GLN ALA TRP LYS ASP SEQRES 4 E 53 ASP TRP ALA ARG TRP ASN GLN ARG TRP ASP ASN TRP ALA SEQRES 5 E 53 THR HET SO4 C2001 5 HET SO4 D2002 5 HET 12P E1001 37 HETNAM SO4 SULFATE ION HETNAM 12P DODECAETHYLENE GLYCOL HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 12P C24 H50 O13 FORMUL 9 HOH *183(H2 O) HELIX 1 1 ALA A 4 THR A 53 1 50 HELIX 2 2 ALA B 4 THR B 53 1 50 HELIX 3 3 ASN C 3 THR C 53 1 51 HELIX 4 4 GLN D 8 THR D 53 1 46 HELIX 5 5 ALA E 4 ASN E 50 1 47 SITE 1 AC1 6 ARG A 47 LYS B 5 ASN C 3 ARG C 47 SITE 2 AC1 6 ASN C 50 TRP C 51 SITE 1 AC2 8 TRP A 41 HOH A 76 TRP C 41 TRP D 37 SITE 2 AC2 8 TRP D 41 HOH D2026 HOH D2038 HOH E1023 SITE 1 AC3 18 TRP A 20 TRP A 23 TRP A 30 TRP B 13 SITE 2 AC3 18 TRP B 20 TRP C 13 TRP C 23 TRP C 30 SITE 3 AC3 18 TRP D 9 ASP D 12 TRP D 23 TRP D 27 SITE 4 AC3 18 TRP D 30 TRP E 9 TRP E 20 TRP E 23 SITE 5 AC3 18 TRP E 27 TRP E 30 CRYST1 30.547 30.665 72.405 97.37 91.94 113.46 P 1 5 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032736 0.014205 0.003346 0.00000 SCALE2 0.000000 0.035548 0.005566 0.00000 SCALE3 0.000000 0.000000 0.013987 0.00000