PDB Short entry for 1TDR HEADER OXIDOREDUCTASE 13-APR-95 1TDR TITLE EXPRESSION, CHARACTERIZATION, AND CRYSTALLOGRAPHIC ANALYSIS OF TITLE 2 TELLUROMETHIONYL DIHYDROFOLATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELLUROMETHIONYL DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.LEWINSKI,L.LEBIODA REVDAT 4 14-FEB-24 1TDR 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1TDR 1 VERSN REVDAT 2 21-JUN-05 1TDR 1 TITLE KEYWDS JRNL REVDAT 1 10-JUL-95 1TDR 0 JRNL AUTH J.O.BOLES,K.LEWINSKI,M.G.KUNCKLE,M.HATADA,L.LEBIODA, JRNL AUTH 2 R.B.DUNLAP,J.D.ODOM JRNL TITL EXPRESSION, CHARACTERIZATION AND CRYSTALLOGRAPHIC ANALYSIS JRNL TITL 2 OF TELLUROMETHIONYL DIHYDROFOLATE REDUCTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 51 731 1995 JRNL REFN ISSN 0907-4449 JRNL PMID 15299803 JRNL DOI 10.1107/S0907444995001156 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.O.BOLES,K.LEWINSKI,M.KUNKLE,J.D.ODOM,R.B.DUNLAP,L.LEBIODA, REMARK 1 AUTH 2 M.HATADA REMARK 1 TITL BIO-INCORPORATION OF TELLUROMETHIONINE INTO BURIED RESIDUES REMARK 1 TITL 2 OF DIHYDROFOLATE REDUCTASE REMARK 1 REF NAT.STRUCT.BIOL. V. 1 283 1994 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.059 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.060 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.013 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.183 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.222 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.233 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.200 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.300 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 22.100; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.928 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.556 ; 1.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.618 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.692 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ATOM SD OF MET 42 AND ATOM SD OF MET 92 HAVE BEEN REMARK 3 PARTIALLY CHEMICALLY SUBSTITUTED BY TELLURIUM. COORDINATES REMARK 3 ARE GIVEN FOR BOTH SD AND TE IN THIS ENTRY, WITH PARTIAL REMARK 3 OCCUPANCIES. NOTE THAT IT IS NOT POSSIBLE FOR BOTH SD AND REMARK 3 TE TO BE PRESENT SIMULTANEOUSLY IN ONE RESIDUE. ATOMS REMARK 3 SD MET 42 AND SD MET 92 ARE PRESENTED AS PART OF RESIDUES REMARK 3 42 AND 92, RESPECTIVELY. THE TELLURIUM ATOMS ARE PRESENTED REMARK 3 AS HET GROUPS AT THE END OF THE CHAIN. REMARK 4 REMARK 4 1TDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-92 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNES, PROCOR REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11234 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 4.350 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 159 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 92 TE TE A 174 1.42 REMARK 500 CE MET B 92 TE TE B 174 1.43 REMARK 500 CD LYS A 154 O HOH A 323 1.58 REMARK 500 CE MET B 42 TE TE B 173 1.86 REMARK 500 CG MET B 42 TE TE B 173 1.87 REMARK 500 CG MET A 92 TE TE A 174 1.90 REMARK 500 SG CYS A 152 O HOH A 268 1.90 REMARK 500 O HOH B 239 O HOH B 301 1.93 REMARK 500 CB HIS B 45 O HOH B 270 1.94 REMARK 500 CE MET A 42 TE TE A 173 1.95 REMARK 500 NZ LYS A 32 O HOH A 305 2.04 REMARK 500 OG1 THR A 68 O HOH A 326 2.07 REMARK 500 O HOH B 240 O HOH B 274 2.10 REMARK 500 O HOH A 256 O HOH A 257 2.10 REMARK 500 N ASP A 122 O HOH A 198 2.11 REMARK 500 CD LYS A 32 O HOH A 305 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 2 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ALA A 7 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LEU A 8 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 VAL A 10 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 12 CG - CD - NE ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG A 12 CD - NE - CZ ANGL. DEV. = 27.2 DEGREES REMARK 500 ARG A 12 NH1 - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 GLU A 17 CG - CD - OE1 ANGL. DEV. = 13.1 DEGREES REMARK 500 MET A 20 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 ALA A 26 CB - CA - C ANGL. DEV. = -9.4 DEGREES REMARK 500 ALA A 26 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 33 NH1 - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = -10.1 DEGREES REMARK 500 GLU A 48 CA - CB - CG ANGL. DEV. = 19.0 DEGREES REMARK 500 GLY A 51 C - N - CA ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 52 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 52 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 SER A 64 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO A 66 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP A 70 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 71 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 87 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP A 87 OD1 - CG - OD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 98 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLU A 101 OE1 - CD - OE2 ANGL. DEV. = 12.1 DEGREES REMARK 500 GLU A 101 CG - CD - OE2 ANGL. DEV. = -14.0 DEGREES REMARK 500 LEU A 104 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 GLN A 108 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 TYR A 111 CG - CD1 - CE1 ANGL. DEV. = 4.9 DEGREES REMARK 500 LEU A 112 O - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 ASP A 116 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 TYR A 128 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU A 129 CG - CD - OE1 ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP A 131 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ASP A 132 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 GLU A 134 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 GLU A 139 CG - CD - OE2 ANGL. DEV. = 13.7 DEGREES REMARK 500 HIS A 141 CA - CB - CG ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP A 144 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 113 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -51.21 -165.72 REMARK 500 GLN A 65 -157.31 -105.47 REMARK 500 LYS A 76 -10.65 -141.48 REMARK 500 ALA A 83 -54.22 -29.51 REMARK 500 ALA A 84 -8.12 -38.84 REMARK 500 PRO A 130 -5.70 -49.42 REMARK 500 GLU A 139 115.40 -166.81 REMARK 500 ASP B 11 8.47 87.93 REMARK 500 PRO B 66 -152.10 -132.85 REMARK 500 ASP B 87 40.11 -104.63 REMARK 500 GLU B 139 111.89 -160.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 33 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 172 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 242 O REMARK 620 2 SER B 135 O 86.9 REMARK 620 3 HOH B 177 O 169.3 93.5 REMARK 620 4 HOH B 179 O 73.4 159.5 104.8 REMARK 620 5 HOH B 226 O 93.7 82.1 96.9 104.3 REMARK 620 6 HOH B 235 O 78.6 95.0 90.7 75.8 172.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTX A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TE A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TE A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTX B 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TE B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TE B 174 DBREF 1TDR A 1 159 UNP P00379 DYR_ECOLI 1 159 DBREF 1TDR B 1 159 UNP P00379 DYR_ECOLI 1 159 SEQADV 1TDR ASP A 37 UNP P00379 ASN 37 CONFLICT SEQADV 1TDR LYS A 154 UNP P00379 GLU 154 CONFLICT SEQADV 1TDR ASP B 37 UNP P00379 ASN 37 CONFLICT SEQADV 1TDR LYS B 154 UNP P00379 GLU 154 CONFLICT SEQRES 1 A 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 A 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 A 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASP LYS PRO SEQRES 4 A 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 A 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 A 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 A 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 A 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 A 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 A 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 A 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 A 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE LYS ILE LEU SEQRES 13 A 159 GLU ARG ARG SEQRES 1 B 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 B 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 B 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASP LYS PRO SEQRES 4 B 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 B 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 B 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 B 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 B 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 B 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 B 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 B 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 B 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE LYS ILE LEU SEQRES 13 B 159 GLU ARG ARG HET CL A 171 1 HET MTX A 170 33 HET TE A 173 1 HET TE A 174 1 HET CL B 171 1 HET CA B 172 1 HET MTX B 170 33 HET TE B 173 1 HET TE B 174 1 HETNAM CL CHLORIDE ION HETNAM MTX METHOTREXATE HETNAM TE TELLURIUM HETNAM CA CALCIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 4 MTX 2(C20 H22 N8 O5) FORMUL 5 TE 4(TE) FORMUL 8 CA CA 2+ FORMUL 12 HOH *340(H2 O) HELIX 1 1 VAL A 10 ARG A 12 5 3 HELIX 2 2 PRO A 25 THR A 35 1 11 HELIX 3 3 ARG A 44 ILE A 50 1 7 HELIX 4 4 VAL A 78 CYS A 85 1 8 HELIX 5 5 GLY A 97 LYS A 106 1 10 HELIX 6 6 PRO B 25 THR B 35 1 11 HELIX 7 7 ARG B 44 ILE B 50 1 7 HELIX 8 8 VAL B 78 CYS B 85 1 8 HELIX 9 9 GLY B 97 LYS B 106 1 10 SHEET 1 A 8 TRP A 133 HIS A 141 0 SHEET 2 A 8 TYR A 151 ARG A 158 -1 N GLU A 157 O GLU A 134 SHEET 3 A 8 LYS A 109 ILE A 115 -1 N HIS A 114 O CYS A 152 SHEET 4 A 8 ILE A 2 ALA A 9 1 N LEU A 4 O LYS A 109 SHEET 5 A 8 ILE A 91 VAL A 93 1 N ILE A 91 O SER A 3 SHEET 6 A 8 PRO A 39 MET A 42 1 N PRO A 39 O MET A 92 SHEET 7 A 8 LYS A 58 LEU A 62 1 N LYS A 58 O VAL A 40 SHEET 8 A 8 THR A 73 VAL A 75 1 N THR A 73 O ILE A 61 SHEET 1 B 8 TRP B 133 HIS B 141 0 SHEET 2 B 8 TYR B 151 ARG B 158 -1 N GLU B 157 O GLU B 134 SHEET 3 B 8 ALA B 107 ILE B 115 -1 N HIS B 114 O CYS B 152 SHEET 4 B 8 ILE B 2 LEU B 8 1 N ILE B 2 O GLN B 108 SHEET 5 B 8 ILE B 91 GLY B 95 1 N ILE B 91 O SER B 3 SHEET 6 B 8 VAL B 40 MET B 42 1 N ILE B 41 O MET B 92 SHEET 7 B 8 ASN B 59 LEU B 62 1 N ILE B 60 O VAL B 40 SHEET 8 B 8 THR B 73 VAL B 75 1 N THR B 73 O ILE B 61 LINK O HOH A 242 CA CA B 172 2665 1555 3.01 LINK O SER B 135 CA CA B 172 1555 1555 2.54 LINK CA CA B 172 O HOH B 177 1555 2665 2.57 LINK CA CA B 172 O HOH B 179 1555 2665 2.68 LINK CA CA B 172 O HOH B 226 1555 1555 2.64 LINK CA CA B 172 O HOH B 235 1555 1555 2.61 CISPEP 1 GLY A 95 GLY A 96 0 -0.80 CISPEP 2 GLY B 95 GLY B 96 0 -0.25 SITE 1 AC1 6 GLY A 43 HIS A 45 THR A 46 GLY A 96 SITE 2 AC1 6 HOH A 225 HOH A 311 SITE 1 AC2 5 GLY B 43 HIS B 45 THR B 46 GLY B 96 SITE 2 AC2 5 HOH B 284 SITE 1 AC3 7 HOH A 242 SER B 135 ALA B 143 HOH B 177 SITE 2 AC3 7 HOH B 179 HOH B 226 HOH B 235 SITE 1 AC4 16 ILE A 5 ASP A 27 LEU A 28 PHE A 31 SITE 2 AC4 16 LYS A 32 ARG A 52 LEU A 54 ARG A 57 SITE 3 AC4 16 ILE A 94 TYR A 100 THR A 113 HOH A 250 SITE 4 AC4 16 HOH A 276 HOH A 278 HOH A 279 HOH A 303 SITE 1 AC5 1 MET A 42 SITE 1 AC6 2 GLU A 90 MET A 92 SITE 1 AC7 14 ILE B 5 ALA B 7 ASP B 27 LEU B 28 SITE 2 AC7 14 PHE B 31 LYS B 32 ARG B 52 ARG B 57 SITE 3 AC7 14 ILE B 94 TYR B 100 THR B 113 HOH B 224 SITE 4 AC7 14 HOH B 252 HOH B 264 SITE 1 AC8 1 MET B 42 SITE 1 AC9 1 MET B 92 CRYST1 93.000 93.000 74.400 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010753 0.006208 0.000000 0.00000 SCALE2 0.000000 0.012416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013441 0.00000