PDB Short entry for 1TN2 HEADER T-RNA 22-AUG-86 1TN2 TITLE CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)- TITLE 2 CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNAPHE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS T-RNA, SINGLE STRAND, LOOPS EXPDTA X-RAY DIFFRACTION AUTHOR R.S.BROWN,J.C.DEWAN,A.KLUG REVDAT 6 14-FEB-24 1TN2 1 REMARK LINK REVDAT 5 13-JUL-11 1TN2 1 VERSN REVDAT 4 24-FEB-09 1TN2 1 VERSN REVDAT 3 01-APR-03 1TN2 1 JRNL REVDAT 2 15-JAN-87 1TN2 1 COMPND REVDAT 1 24-OCT-86 1TN2 0 JRNL AUTH R.S.BROWN,J.C.DEWAN,A.KLUG JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE JRNL TITL 2 LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA. JRNL REF BIOCHEMISTRY V. 24 4785 1985 JRNL REFN ISSN 0006-2960 JRNL PMID 3907691 JRNL DOI 10.1021/BI00339A012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.S.BROWN,B.E.HINGERTY,J.C.DEWAN,A.KLUG REMARK 1 TITL PB(II)-CATALYSED CLEAVAGE OF THE SUGAR-PHOSPHATE BACKBONE OF REMARK 1 TITL 2 YEAST T-RNA-PHE-IMPLICATIONS FOR LEAD TOXICITY AND REMARK 1 TITL 3 SELF-SPLICING RNA REMARK 1 REF NATURE V. 303 543 1983 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : JACK-LEVITT REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1652 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.60000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 86 O HOH A 163 0.35 REMARK 500 PB PB A 84 O HOH A 182 0.84 REMARK 500 O HOH A 181 O HOH A 190 1.32 REMARK 500 P A A 23 O HOH A 162 1.37 REMARK 500 OP2 G A 3 O HOH A 152 1.53 REMARK 500 PB PB A 84 O HOH A 190 1.57 REMARK 500 OP2 A A 23 O HOH A 162 1.57 REMARK 500 N10 SPM A 77 O HOH A 182 1.59 REMARK 500 N10 SPM A 77 PB PB A 84 1.69 REMARK 500 PB PB A 84 O HOH A 181 1.73 REMARK 500 O5' A A 23 O HOH A 162 1.84 REMARK 500 C8 SPM A 77 O HOH A 182 1.91 REMARK 500 O2' G A 15 O HOH A 102 1.92 REMARK 500 O2' A A 67 O HOH A 95 1.95 REMARK 500 O3' G A 22 O HOH A 162 1.96 REMARK 500 O HOH A 125 O HOH A 178 1.99 REMARK 500 C9 SPM A 77 O HOH A 182 1.99 REMARK 500 N10 SPM A 77 O HOH A 181 1.99 REMARK 500 O3' U A 47 O HOH A 163 2.03 REMARK 500 P G A 3 O HOH A 152 2.03 REMARK 500 C8 SPM A 77 PB PB A 84 2.03 REMARK 500 O5' A A 62 O HOH A 169 2.05 REMARK 500 O5' C A 48 O HOH A 86 2.08 REMARK 500 OP2 U A 8 O HOH A 93 2.08 REMARK 500 OP1 U A 8 O HOH A 175 2.09 REMARK 500 OP2 A A 62 O HOH A 169 2.10 REMARK 500 C11 SPM A 77 O HOH A 181 2.11 REMARK 500 C8 A A 73 O HOH A 119 2.12 REMARK 500 C1' G A 65 O HOH A 115 2.13 REMARK 500 C5 U A 47 O HOH A 101 2.15 REMARK 500 O HOH A 181 O HOH A 182 2.15 REMARK 500 C2' G A 15 O HOH A 102 2.16 REMARK 500 O3' U A 47 O HOH A 86 2.17 REMARK 500 C12 SPM A 77 O HOH A 181 2.17 REMARK 500 O4 U A 59 PB PB A 83 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 124 O HOH A 126 2656 0.90 REMARK 500 O2' C A 13 O HOH A 94 1545 1.28 REMARK 500 C2' C A 13 O HOH A 94 1545 1.37 REMARK 500 C3' C A 13 O HOH A 94 1545 1.39 REMARK 500 N4 C A 75 O HOH A 154 2646 1.60 REMARK 500 O3' C A 13 O HOH A 94 1545 1.62 REMARK 500 O2' G A 43 O2' C A 75 2656 1.75 REMARK 500 N1 PSU A 55 O HOH A 87 2656 1.82 REMARK 500 C4' C A 13 O HOH A 94 1545 1.91 REMARK 500 O2' G A 42 C4' A A 76 2656 2.05 REMARK 500 N3 G A 43 O2 C A 75 2656 2.11 REMARK 500 O2' G A 42 O3' A A 76 2656 2.18 REMARK 500 O2' G A 42 C3' A A 76 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 N3 G A 1 C4 0.045 REMARK 500 G A 1 C6 G A 1 N1 -0.050 REMARK 500 G A 1 N7 G A 1 C8 0.116 REMARK 500 C A 2 N1 C A 2 C6 -0.047 REMARK 500 C A 2 C5 C A 2 C6 0.056 REMARK 500 G A 3 N1 G A 3 C2 -0.050 REMARK 500 G A 3 C6 G A 3 N1 -0.081 REMARK 500 G A 3 N7 G A 3 C8 0.135 REMARK 500 G A 3 C8 G A 3 N9 0.066 REMARK 500 G A 4 C6 G A 4 N1 -0.063 REMARK 500 G A 4 N7 G A 4 C8 0.139 REMARK 500 G A 4 C8 G A 4 N9 0.045 REMARK 500 A A 5 C6 A A 5 N1 -0.049 REMARK 500 A A 5 N7 A A 5 C8 0.144 REMARK 500 A A 5 N9 A A 5 C4 -0.046 REMARK 500 U A 6 N1 U A 6 C6 -0.066 REMARK 500 U A 6 C5 U A 6 C6 0.060 REMARK 500 U A 7 P U A 7 O5' -0.064 REMARK 500 U A 7 N1 U A 7 C2 -0.095 REMARK 500 U A 7 N1 U A 7 C6 -0.090 REMARK 500 U A 7 C2 U A 7 N3 -0.079 REMARK 500 U A 7 N3 U A 7 C4 -0.095 REMARK 500 U A 7 C4 U A 7 C5 -0.065 REMARK 500 U A 8 C2' U A 8 C1' -0.058 REMARK 500 U A 8 N1 U A 8 C2 -0.074 REMARK 500 U A 8 N1 U A 8 C6 -0.062 REMARK 500 U A 8 C2 U A 8 N3 -0.053 REMARK 500 U A 8 N3 U A 8 C4 -0.076 REMARK 500 U A 8 C4 U A 8 C5 -0.063 REMARK 500 A A 9 P A A 9 O5' -0.069 REMARK 500 A A 9 C2' A A 9 C1' -0.058 REMARK 500 A A 9 N3 A A 9 C4 0.038 REMARK 500 A A 9 C5 A A 9 C6 -0.059 REMARK 500 A A 9 N7 A A 9 C8 0.098 REMARK 500 A A 9 N9 A A 9 C4 -0.077 REMARK 500 C A 11 N1 C A 11 C2 -0.069 REMARK 500 C A 11 N1 C A 11 C6 -0.051 REMARK 500 U A 12 N1 U A 12 C6 -0.070 REMARK 500 U A 12 N3 U A 12 C4 -0.060 REMARK 500 U A 12 C5 U A 12 C6 0.064 REMARK 500 C A 13 N1 C A 13 C2 -0.079 REMARK 500 C A 13 N1 C A 13 C6 -0.066 REMARK 500 C A 13 N3 C A 13 C4 -0.044 REMARK 500 C A 13 C5 C A 13 C6 0.053 REMARK 500 A A 14 C2' A A 14 C1' -0.052 REMARK 500 A A 14 C6 A A 14 N1 -0.077 REMARK 500 A A 14 N7 A A 14 C8 0.099 REMARK 500 G A 15 N1 G A 15 C2 -0.058 REMARK 500 G A 15 N3 G A 15 C4 0.043 REMARK 500 G A 15 C6 G A 15 N1 -0.072 REMARK 500 REMARK 500 THIS ENTRY HAS 196 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 N9 - C1' - C2' ANGL. DEV. = -8.5 DEGREES REMARK 500 G A 1 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 G A 1 C2 - N3 - C4 ANGL. DEV. = 8.9 DEGREES REMARK 500 G A 1 N3 - C4 - C5 ANGL. DEV. = -13.0 DEGREES REMARK 500 G A 1 C5 - C6 - N1 ANGL. DEV. = 6.4 DEGREES REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 G A 1 N9 - C4 - C5 ANGL. DEV. = 4.1 DEGREES REMARK 500 G A 1 N3 - C4 - N9 ANGL. DEV. = 8.8 DEGREES REMARK 500 G A 1 N1 - C6 - O6 ANGL. DEV. = 3.7 DEGREES REMARK 500 G A 1 C5 - C6 - O6 ANGL. DEV. = -10.1 DEGREES REMARK 500 C A 2 O5' - C5' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 C A 2 N3 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 G A 3 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 G A 3 C2 - N3 - C4 ANGL. DEV. = 8.5 DEGREES REMARK 500 G A 3 N3 - C4 - C5 ANGL. DEV. = -14.2 DEGREES REMARK 500 G A 3 C4 - C5 - C6 ANGL. DEV. = 4.1 DEGREES REMARK 500 G A 3 C5 - C6 - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 G A 3 N7 - C8 - N9 ANGL. DEV. = -4.1 DEGREES REMARK 500 G A 3 N9 - C4 - C5 ANGL. DEV. = 5.2 DEGREES REMARK 500 G A 3 N3 - C4 - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 G A 3 N1 - C6 - O6 ANGL. DEV. = 3.9 DEGREES REMARK 500 G A 3 C5 - C6 - O6 ANGL. DEV. = -10.4 DEGREES REMARK 500 G A 4 P - O5' - C5' ANGL. DEV. = -10.4 DEGREES REMARK 500 G A 4 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 G A 4 C2 - N3 - C4 ANGL. DEV. = 9.1 DEGREES REMARK 500 G A 4 N3 - C4 - C5 ANGL. DEV. = -12.5 DEGREES REMARK 500 G A 4 C5 - C6 - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 G A 4 C4 - C5 - N7 ANGL. DEV. = -3.1 DEGREES REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 G A 4 N9 - C4 - C5 ANGL. DEV. = 5.1 DEGREES REMARK 500 G A 4 N3 - C4 - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 G A 4 N1 - C2 - N2 ANGL. DEV. = 6.1 DEGREES REMARK 500 G A 4 N3 - C2 - N2 ANGL. DEV. = -4.9 DEGREES REMARK 500 G A 4 C5 - C6 - O6 ANGL. DEV. = -9.6 DEGREES REMARK 500 A A 5 N1 - C2 - N3 ANGL. DEV. = -7.2 DEGREES REMARK 500 A A 5 C2 - N3 - C4 ANGL. DEV. = 11.1 DEGREES REMARK 500 A A 5 N3 - C4 - C5 ANGL. DEV. = -12.3 DEGREES REMARK 500 A A 5 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 A A 5 N7 - C8 - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 A A 5 N9 - C4 - C5 ANGL. DEV. = 5.8 DEGREES REMARK 500 A A 5 N3 - C4 - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 U A 6 P - O5' - C5' ANGL. DEV. = -10.3 DEGREES REMARK 500 U A 6 N1 - C2 - N3 ANGL. DEV. = 5.9 DEGREES REMARK 500 U A 6 C2 - N3 - C4 ANGL. DEV. = -5.5 DEGREES REMARK 500 U A 6 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 U A 6 C5 - C4 - O4 ANGL. DEV. = -6.5 DEGREES REMARK 500 U A 7 N1 - C2 - N3 ANGL. DEV. = 7.2 DEGREES REMARK 500 U A 7 C2 - N3 - C4 ANGL. DEV. = -6.9 DEGREES REMARK 500 U A 7 N3 - C4 - C5 ANGL. DEV. = 4.9 DEGREES REMARK 500 U A 7 C5 - C6 - N1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 418 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A 19 0.12 SIDE CHAIN REMARK 500 A A 21 0.09 SIDE CHAIN REMARK 500 G A 24 0.07 SIDE CHAIN REMARK 500 C A 27 0.07 SIDE CHAIN REMARK 500 A A 38 0.07 SIDE CHAIN REMARK 500 G A 45 0.09 SIDE CHAIN REMARK 500 G A 53 0.12 SIDE CHAIN REMARK 500 G A 65 0.07 SIDE CHAIN REMARK 500 C A 72 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 79 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 20 OP1 REMARK 620 2 HOH A 106 O 85.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 78 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 93 O REMARK 620 2 HOH A 150 O 117.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 79 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 80 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB A 83 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB A 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PB A 85 DBREF 1TN2 A 1 76 PDB 1TN2 1TN2 1 76 SEQRES 1 A 76 G C G G A U U U A 2MG C U C SEQRES 2 A 76 A G H2U H2U G G G A G A G C M2G SEQRES 3 A 76 C C A G A OMC U OMG A A YG A PSU SEQRES 4 A 76 5MC U G G A G 7MG U C 5MC U G U SEQRES 5 A 76 G 5MU PSU C G 1MA U C C A C A G SEQRES 6 A 76 A A U U C G C A C C A MODRES 1TN2 2MG A 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TN2 H2U A 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TN2 H2U A 17 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1TN2 M2G A 26 G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TN2 OMC A 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 1TN2 OMG A 34 G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1TN2 YG A 37 G WYBUTOSINE MODRES 1TN2 PSU A 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TN2 5MC A 40 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TN2 7MG A 46 G MODRES 1TN2 5MC A 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1TN2 5MU A 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 1TN2 PSU A 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1TN2 1MA A 58 A HET 2MG A 10 24 HET H2U A 16 20 HET H2U A 17 20 HET M2G A 26 25 HET OMC A 32 21 HET OMG A 34 24 HET YG A 37 39 HET PSU A 39 20 HET 5MC A 40 21 HET 7MG A 46 24 HET 5MC A 49 21 HET 5MU A 54 21 HET PSU A 55 20 HET 1MA A 58 23 HET SPM A 77 14 HET MG A 78 1 HET MG A 79 1 HET MG A 80 1 HET MG A 81 1 HET MG A 82 1 HET PB A 83 1 HET PB A 84 1 HET PB A 85 1 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM M2G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM YG WYBUTOSINE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM SPM SPERMINE HETNAM MG MAGNESIUM ION HETNAM PB LEAD (II) ION HETSYN YG Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4, HETSYN 2 YG 9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL- HETSYN 3 YG 9-OXO-METHYL ESTER FORMUL 1 2MG C11 H16 N5 O8 P FORMUL 1 H2U 2(C9 H15 N2 O9 P) FORMUL 1 M2G C12 H18 N5 O8 P FORMUL 1 OMC C10 H16 N3 O8 P FORMUL 1 OMG C11 H16 N5 O8 P FORMUL 1 YG C21 H29 N6 O12 P FORMUL 1 PSU 2(C9 H13 N2 O9 P) FORMUL 1 5MC 2(C10 H16 N3 O8 P) FORMUL 1 7MG C11 H18 N5 O8 P FORMUL 1 5MU C10 H15 N2 O9 P FORMUL 1 1MA C11 H16 N5 O7 P FORMUL 2 SPM C10 H26 N4 FORMUL 3 MG 5(MG 2+) FORMUL 8 PB 3(PB 2+) FORMUL 11 HOH *107(H2 O) LINK O3' A A 9 P 2MG A 10 1555 1555 1.60 LINK O3' 2MG A 10 P C A 11 1555 1555 1.58 LINK O3' G A 15 P H2U A 16 1555 1555 1.62 LINK O3' H2U A 16 P H2U A 17 1555 1555 1.62 LINK O3' H2U A 17 P G A 18 1555 1555 1.62 LINK O3' C A 25 P M2G A 26 1555 1555 1.58 LINK O3' M2G A 26 P C A 27 1555 1555 1.57 LINK O3' A A 31 P OMC A 32 1555 1555 1.63 LINK O3' OMC A 32 P U A 33 1555 1555 1.62 LINK O3' U A 33 P OMG A 34 1555 1555 1.63 LINK O3' OMG A 34 P A A 35 1555 1555 1.64 LINK O3' A A 36 P YG A 37 1555 1555 1.63 LINK O3' YG A 37 P A A 38 1555 1555 1.62 LINK O3' A A 38 P PSU A 39 1555 1555 1.60 LINK O3' PSU A 39 P 5MC A 40 1555 1555 1.58 LINK O3' 5MC A 40 P U A 41 1555 1555 1.61 LINK O3' G A 45 P 7MG A 46 1555 1555 1.60 LINK O3' 7MG A 46 P U A 47 1555 1555 1.60 LINK O3' C A 48 P 5MC A 49 1555 1555 1.57 LINK O3' 5MC A 49 P U A 50 1555 1555 1.62 LINK O3' G A 53 P 5MU A 54 1555 1555 1.61 LINK O3' 5MU A 54 P PSU A 55 1555 1555 1.61 LINK O3' PSU A 55 P C A 56 1555 1555 1.61 LINK O3' G A 57 P 1MA A 58 1555 1555 1.58 LINK O3' 1MA A 58 P U A 59 1555 1555 1.63 LINK OP1 G A 20 MG MG A 79 1555 1555 2.43 LINK MG MG A 78 O HOH A 93 1555 1555 2.38 LINK MG MG A 78 O HOH A 150 1555 1555 2.19 LINK MG MG A 79 O HOH A 106 1555 1555 1.79 SITE 1 AC1 12 A A 9 G A 22 A A 23 G A 24 SITE 2 AC1 12 C A 25 G A 45 7MG A 46 PB A 84 SITE 3 AC1 12 HOH A 162 HOH A 181 HOH A 182 HOH A 190 SITE 1 AC2 4 U A 12 HOH A 93 HOH A 150 HOH A 175 SITE 1 AC3 3 G A 20 A A 21 HOH A 106 SITE 1 AC4 4 G A 19 G A 20 U A 59 PB A 83 SITE 1 AC5 4 G A 19 U A 59 C A 60 MG A 80 SITE 1 AC6 5 G A 45 SPM A 77 HOH A 181 HOH A 182 SITE 2 AC6 5 HOH A 190 SITE 1 AC7 4 OMC A 32 U A 33 A A 36 YG A 37 CRYST1 56.700 33.200 63.000 90.00 89.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017637 0.000000 -0.000031 0.00000 SCALE2 0.000000 0.030120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015873 0.00000