PDB Short entry for 1TNS HEADER DNA BINDING PROTEIN 10-OCT-94 1TNS TITLE A NOVEL CLASS OF WINGED HELIX-TURN-HELIX PROTEIN: THE DNA-BINDING TITLE 2 DOMAIN OF MU TRANSPOSASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MU-TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; SOURCE 3 ORGANISM_TAXID: 10677 KEYWDS DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR G.M.CLORE,R.T.CLUBB,J.G.OMICHINSKI,A.M.GRONENBORN REVDAT 3 02-MAR-22 1TNS 1 KEYWDS REMARK SEQADV REVDAT 2 24-FEB-09 1TNS 1 VERSN REVDAT 1 14-FEB-95 1TNS 0 JRNL AUTH R.T.CLUBB,J.G.OMICHINSKI,H.SAVILAHTI,K.MIZUUCHI, JRNL AUTH 2 A.M.GRONENBORN,G.M.CLORE JRNL TITL A NOVEL CLASS OF WINGED HELIX-TURN-HELIX PROTEIN: THE JRNL TITL 2 DNA-BINDING DOMAIN OF MU TRANSPOSASE. JRNL REF STRUCTURE V. 2 1041 1994 JRNL REFN ISSN 0969-2126 JRNL PMID 7881904 JRNL DOI 10.1016/S0969-2126(94)00107-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE 3D SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF MU REMARK 3 TRANSPOSASE (MUA76, RESIDUES 1 - 76) WAS SOLVED BY REMARK 3 MULTIDIMENSIONAL HETERONUCLEAR-EDITED NMR EXPERIMENTS AND REMARK 3 IS BASED ON 1320 EXPERIMENTAL RESTRAINTS COMPRISING THE REMARK 3 FOLLOWING: (A) 1192 APPROXIMATE INTERPROTON DISTANCE REMARK 3 RESTRAINTS (308 SEQUENTIAL, 266 SHORT RANGE 1 , |I-J| <=5, REMARK 3 323 LONG RANGE |I-J|>5, AND 295 INTRARESIDUE (B) 18 REMARK 3 DISTANCE RESTRAINTS FOR 9 BACKBONE HYDROGEN BONDS (C) 36 REMARK 3 HN-CAH COUPLING CONSTANT RESTRAINTS (D) 74 TORSION ANGLE REMARK 3 RESTRAINTS (40 PHI, 23 CHI1 AND 11 CHI2). REMARK 3 REMARK 3 A COMPLETE LIST OF EXPERIMENTAL RESTRAINTS HAVE BEEN REMARK 3 DEPOSITED WITH THE BROOKHAVEN DATA BANK. REMARK 3 REMARK 3 THE STRUCTURES ARE CALCULATED USING THE HYBRID METRIC REMARK 3 MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING REMARK 3 METHOD DESCRIBED BY: NILGES, M., CLORE, G.M. & REMARK 3 GRONENBORN, A.M. (1988) FEBS LETT 229, 317 - 324 ALL REMARK 3 STRUCTURAL STATISTICS ARE GIVEN IN REF. 1. REMARK 3 REMARK 3 THIS STRUCTURE IS THE RESTRAINED MINIMIZED AVERAGE REMARK 3 STRUCTURE: (SA)R. THIS IS OBTAINED BY FIRST AVERAGING REMARK 3 THE COORDINATES OF THE INDIVIDUAL 33 DYNAMICAL SIMULATED REMARK 3 ANNEALING (SA) STRUCTURES BEST FITTED TO RESIDUES 3 - 36 REMARK 3 AND 45 - 65 AND SUBJECTING THE RESULTING COORDINATES TO REMARK 3 RESTRAINED MINIMIZATION. THE LAST NUMBER COLUMN IN THIS REMARK 3 SET OF COORDINATES (THE B-FACTOR COLUMN IN X-RAY REMARK 3 STRUCTURES) GIVES THE AVERAGE RMS DIFFERENCE BETWEEN THE REMARK 3 INDIVIDUAL SA STRUCTURES AND THE MEAN STRUCTURE. THE REMARK 3 NUMBERS IN THE LAST COLUMN OF THE INDIVIDUAL STRUCTURES REMARK 3 HAVE NO MEANING. RESIDUES 1 - 2, 66 - 76, AND 37 - 44 ARE REMARK 3 DISORDERED IN SOLUTION. THE 33 INDIVIDUAL STRUCTURES CAN REMARK 3 BE FOUND IN PDB ENTRY 1TNT. REMARK 4 REMARK 4 1TNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176761. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 74.35 -161.65 REMARK 500 ALA A 11 29.24 -64.14 REMARK 500 ASN A 12 -8.49 -146.05 REMARK 500 PRO A 17 177.69 -55.06 REMARK 500 GLN A 30 -61.74 -150.16 REMARK 500 GLN A 33 98.07 -47.88 REMARK 500 VAL A 40 -83.13 -93.08 REMARK 500 LYS A 41 -74.06 -80.52 REMARK 500 LYS A 44 97.32 52.05 REMARK 500 PRO A 54 -165.06 -57.25 REMARK 500 GLU A 67 93.37 55.99 REMARK 500 ILE A 68 -77.92 -85.14 REMARK 500 GLU A 69 -133.64 -136.18 REMARK 500 THR A 70 -139.27 -80.73 REMARK 500 SER A 71 -74.16 73.33 REMARK 500 PHE A 75 23.60 40.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TNT RELATED DB: PDB DBREF 1TNS A 1 76 UNP P07636 TRA_BPMU 1 76 SEQADV 1TNS LEU A 10 UNP P07636 CYS 10 CONFLICT SEQRES 1 A 76 MET GLU LEU TRP VAL SER PRO LYS GLU LEU ALA ASN LEU SEQRES 2 A 76 PRO GLY LEU PRO LYS THR SER ALA GLY VAL ILE TYR VAL SEQRES 3 A 76 ALA LYS LYS GLN GLY TRP GLN ASN ARG THR ARG ALA GLY SEQRES 4 A 76 VAL LYS GLY GLY LYS ALA ILE GLU TYR ASN ALA ASN SER SEQRES 5 A 76 LEU PRO VAL GLU ALA LYS ALA ALA LEU LEU LEU ARG GLN SEQRES 6 A 76 GLY GLU ILE GLU THR SER LEU GLY TYR PHE GLU HELIX 1 1 SER A 6 ALA A 11 1 6 HELIX 2 2 THR A 19 LYS A 29 1 11 HELIX 3 3 PRO A 54 GLN A 65 1 12 SHEET 1 A 2 TRP A 4 VAL A 5 0 SHEET 2 A 2 TYR A 48 ASN A 49 -1 O TYR A 48 N VAL A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000