PDB Short entry for 1TRD HEADER INTRAMOLECULAR OXIDOREDUCTASE 06-OCT-92 1TRD TITLE THE INFLUENCE OF CRYSTAL PACKING ON CRYSTALLOGRAPHIC BINDING STUDIES: TITLE 2 A NEW CRYSTAL FORM OF TRYPANOSOMAL TIM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: BRUCEI KEYWDS INTRAMOLECULAR OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.M.NOBLE,R.K.WIERENGA REVDAT 8 14-FEB-24 1TRD 1 REMARK REVDAT 7 14-AUG-19 1TRD 1 REMARK REVDAT 6 17-JUL-19 1TRD 1 REMARK REVDAT 5 16-NOV-11 1TRD 1 HETATM REVDAT 4 13-JUL-11 1TRD 1 VERSN REVDAT 3 24-FEB-09 1TRD 1 VERSN REVDAT 2 01-APR-03 1TRD 1 JRNL REVDAT 1 31-OCT-93 1TRD 0 JRNL AUTH M.E.NOBLE,J.P.ZEELEN,R.K.WIERENGA JRNL TITL STRUCTURES OF THE "OPEN" AND "CLOSED" STATE OF TRYPANOSOMAL JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE, AS OBSERVED IN A NEW CRYSTAL JRNL TITL 3 FORM: IMPLICATIONS FOR THE REACTION MECHANISM. JRNL REF PROTEINS V. 16 311 1993 JRNL REFN ISSN 0887-3585 JRNL PMID 8356028 JRNL DOI 10.1002/PROT.340160402 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.31000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.31000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TIM IS A DIMERIC ENZYME. THE COORDINATE LIST CONSISTS OF REMARK 300 TWO SUBUNITS (A 2 - A 250, B 2 - B 250). THESE SUBUNITS REMARK 300 BELONG TO TWO DIFFERENT DIMERS. THE PGH MOLECULE IS REMARK 300 ASSOCIATED WITH (B 2 - B 250). THE COMPLETE DIMERS CAN BE REMARK 300 GENERATED WITH CRYSTALLOGRAPHIC TWOFOLDS. (USING THESE REMARK 300 CRYSTALLOGRAPHIC TWOFOLDS A COMPLETE UNLIGANDED DIMER AND A REMARK 300 COMPLETE PGH-DIMER CAN BE GENERATED. REMARK 300 REMARK 300 THE FOLLOWING MATRIX RECORDS CAN BE USED TO GENERATE THE REMARK 300 DIMERS: REMARK 300 REMARK 300 -1.000000 0.000000 0.000000 0.00000 REMARK 300 0.000000 1.000000 0.000000 0.00000 REMARK 300 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 23.54616 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -129.18163 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 333 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 322 O HOH B 322 2555 0.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 107 CD GLU A 107 OE2 0.083 REMARK 500 GLU A 129 CD GLU A 129 OE2 0.088 REMARK 500 GLU A 133 CD GLU A 133 OE1 0.072 REMARK 500 GLU A 135 CD GLU A 135 OE2 0.073 REMARK 500 GLU A 167 CD GLU A 167 OE2 0.101 REMARK 500 GLU A 185 CD GLU A 185 OE1 0.078 REMARK 500 GLU B 53 CD GLU B 53 OE1 0.067 REMARK 500 GLU B 97 CD GLU B 97 OE2 0.069 REMARK 500 GLU B 107 CD GLU B 107 OE1 0.068 REMARK 500 GLU B 129 CD GLU B 129 OE2 0.067 REMARK 500 GLU B 135 CD GLU B 135 OE2 0.070 REMARK 500 GLU B 185 CD GLU B 185 OE2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 26 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 CYS A 39 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ILE A 164 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 201 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 VAL A 233 CA - CB - CG2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ASP B 26 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 26 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 THR B 105 CA - CB - CG2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP B 158 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 158 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG B 191 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 201 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 207 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP B 227 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 PRO B 240 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -138.99 51.81 REMARK 500 CYS A 14 69.16 -100.62 REMARK 500 SER A 43 -166.71 -116.13 REMARK 500 ASN A 66 168.07 171.10 REMARK 500 SER A 136 3.98 -67.81 REMARK 500 VAL A 142 -62.11 -91.52 REMARK 500 ILE A 150 -74.33 -61.19 REMARK 500 ALA A 151 -36.07 -36.74 REMARK 500 LYS A 217 -61.41 -100.86 REMARK 500 ALA A 236 -30.93 -39.50 REMARK 500 GLU A 241 -22.88 -39.77 REMARK 500 LYS B 13 -151.26 63.25 REMARK 500 GLN B 19 -75.45 -77.65 REMARK 500 ASN B 66 170.80 174.09 REMARK 500 ALA B 67 169.87 176.57 REMARK 500 ILE B 91 136.65 -171.64 REMARK 500 HIS B 95 135.85 -39.79 REMARK 500 ALA B 118 26.94 -71.74 REMARK 500 SER B 119 -4.77 -151.05 REMARK 500 LYS B 152 -10.63 -45.94 REMARK 500 LYS B 161 32.92 -97.46 REMARK 500 ARG B 220 -70.42 -48.45 REMARK 500 ALA B 236 -1.36 -59.05 REMARK 500 PRO B 240 -43.15 -25.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH B 300 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE ALA 203 IN BOTH CHAINS IS LISTED IN THE SEQUENCE REMARK 999 DATABASE AS ARG. RECENT STUDIES HAVE SHOWN THIS RESIDUE REMARK 999 TO BE ALA. DBREF 1TRD A 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 1TRD B 1 250 UNP P04789 TPIS_TRYBB 1 250 SEQRES 1 A 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 A 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 A 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 A 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 A 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 A 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 A 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 A 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 A 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 A 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 A 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 A 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 A 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 A 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 A 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 A 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 A 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 A 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE LEU VAL GLY SEQRES 19 A 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 A 250 ALA THR GLN SEQRES 1 B 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 B 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 B 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 B 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 B 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 B 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 B 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 B 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 B 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 B 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 B 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 B 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 B 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 B 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 B 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 B 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 B 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 B 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE LEU VAL GLY SEQRES 19 B 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 B 250 ALA THR GLN HET PGH B 300 10 HETNAM PGH PHOSPHOGLYCOLOHYDROXAMIC ACID FORMUL 3 PGH C2 H6 N O6 P FORMUL 4 HOH *61(H2 O) HELIX 1 1 SER A 17 SER A 30 1 14 HELIX 2 2 HIS A 47 LEU A 55 1 9 HELIX 3 3 SER A 79 GLY A 87 1 9 HELIX 4 4 HIS A 95 TYR A 102 1 8 HELIX 5 5 THR A 105 SER A 119 1 15 HELIX 6 6 THR A 130 SER A 136 1 7 HELIX 7 7 ARG A 138 LYS A 153 1 16 HELIX 8 8 LYS A 156 ALA A 160 5 5 HELIX 9 9 PRO A 168 ILE A 172 5 5 HELIX 10 10 THR A 179 GLY A 199 1 21 HELIX 11 11 GLY A 199 LEU A 206 1 8 HELIX 12 12 ASN A 218 GLN A 224 1 7 HELIX 13 13 GLY A 234 PRO A 240 5 7 HELIX 14 14 GLU A 241 ALA A 248 1 8 HELIX 15 15 SER B 17 SER B 30 1 14 HELIX 16 16 HIS B 47 LEU B 55 1 9 HELIX 17 17 SER B 79 GLY B 87 1 9 HELIX 18 18 HIS B 95 TYR B 101 1 7 HELIX 19 19 THR B 105 ALA B 118 1 14 HELIX 20 20 THR B 130 SER B 136 1 7 HELIX 21 21 ARG B 138 LYS B 152 1 15 HELIX 22 22 LYS B 153 LEU B 154 5 2 HELIX 23 23 LYS B 155 ALA B 160 5 6 HELIX 24 24 PRO B 168 ILE B 172 5 5 HELIX 25 25 THR B 179 ILE B 198 1 20 HELIX 26 26 GLY B 199 LEU B 206 1 8 HELIX 27 27 ASN B 218 GLN B 224 1 7 HELIX 28 28 GLY B 234 LEU B 238 5 5 HELIX 29 29 LYS B 239 PRO B 240 5 2 HELIX 30 30 GLU B 241 LYS B 247 1 7 SHEET 1 A 4 PHE A 60 ALA A 64 0 SHEET 2 A 4 GLN A 38 SER A 43 1 O CYS A 39 N VAL A 61 SHEET 3 A 4 ILE A 7 ASN A 11 1 O ALA A 8 N VAL A 40 SHEET 4 A 4 GLY A 230 VAL A 233 1 O PHE A 231 N ALA A 9 SHEET 1 B 3 TRP A 90 LEU A 93 0 SHEET 2 B 3 MET A 122 ILE A 127 1 O MET A 122 N ILE A 91 SHEET 3 B 3 VAL A 162 TYR A 166 1 O VAL A 163 N ALA A 125 SHEET 1 C 9 ILE B 7 ASN B 11 0 SHEET 2 C 9 GLN B 38 SER B 43 1 O GLN B 38 N ALA B 8 SHEET 3 C 9 PHE B 60 ALA B 64 1 N VAL B 61 O CYS B 39 SHEET 4 C 9 TRP B 90 LEU B 93 1 O TRP B 90 N ALA B 64 SHEET 5 C 9 MET B 122 ILE B 127 1 O MET B 122 N ILE B 91 SHEET 6 C 9 VAL B 162 TYR B 166 1 N VAL B 163 O VAL B 123 SHEET 7 C 9 ILE B 208 GLY B 211 1 O LEU B 209 N TYR B 166 SHEET 8 C 9 GLY B 230 VAL B 233 1 O GLY B 230 N TYR B 210 SHEET 9 C 9 ILE B 7 ASN B 11 1 O ILE B 7 N PHE B 231 SITE 1 AC1 11 ASN B 11 LYS B 13 HIS B 95 GLU B 167 SITE 2 AC1 11 GLY B 173 SER B 213 LEU B 232 GLY B 234 SITE 3 AC1 11 GLY B 235 HOH B 306 HOH B 359 CRYST1 94.620 48.000 131.310 90.00 100.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010569 0.000000 0.001926 0.00000 SCALE2 0.000000 0.020833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007741 0.00000