PDB Short entry for 1TVM HEADER TRANSFERASE 29-JUN-04 1TVM TITLE NMR STRUCTURE OF ENZYME GATB OF THE GALACTITOL-SPECIFIC TITLE 2 PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS SYSTEM, GALACTITOL-SPECIFIC IIB COMPONENT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIIB-GAT, GALACTICOL-PERMEASE IIB COMPONENT, COMPND 5 PHOSPHOTRANSFERASE ENZYME II, B COMPONENT, GATB; COMPND 6 EC: 2.7.1.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GATB, C2618, Z3256, ECS2896, SF2155, S2281; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIVTEV KEYWDS PHOSPHOTRANSFERASE SYSTEM (PTS), P-LOOP, FOUR-STRANDED PARALLEL OPEN KEYWDS 2 TWISTED BETA SHEET FLANKED BY ALPHA HELICES ON BOTH SIDES, E. COLI, KEYWDS 3 MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, KEYWDS 4 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.VOLPON,C.R.YOUNG,N.S.LIM,P.IANNUZZI,M.CYGLER,K.GEHRING,MONTREAL- AUTHOR 2 KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE (BSGI) REVDAT 4 02-MAR-22 1TVM 1 REMARK SEQADV REVDAT 3 24-FEB-09 1TVM 1 VERSN REVDAT 2 10-OCT-06 1TVM 1 JRNL REVDAT 1 06-SEP-05 1TVM 0 JRNL AUTH L.VOLPON,C.R.YOUNG,A.MATTE,K.GEHRING JRNL TITL NMR STRUCTURE OF THE ENZYME GATB OF THE GALACTITOL-SPECIFIC JRNL TITL 2 PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM AND JRNL TITL 3 ITS INTERACTION WITH GATA. JRNL REF PROTEIN SCI. V. 15 2435 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16963640 JRNL DOI 10.1110/PS.062337406 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, TALOS 2003.027.13.05, CNS 1.1 REMARK 3 AUTHORS : BAX (TALOS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1377 RESTRAINTS: 1119 NOE-DERIVED DISTANCE CONSTRAINTS, 120 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 56 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS (28 HYDROGEN BONDS), AND 82 15N-1H RESIDUAL DIPOLAR REMARK 3 COUPLINGS. REMARK 4 REMARK 4 1TVM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022946. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 MM PHOSPHATE, 75 MM NACL, 75 REMARK 210 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM U-15N,13C GATB, 100 MM REMARK 210 PHOSPHATE BUFFER, 75 MM KCL, 75 REMARK 210 MM NACL, 1 MM DTT, 1 MM SODIUM REMARK 210 AZIDE, 90% H2O, 10 % D2O; 1 MM U- REMARK 210 15N,13C GATB, 100 MM PHOSPHATE REMARK 210 BUFFER, 75 MM KCL, 75 MM NACL, 1 REMARK 210 MM DTT, 1 MM SODIUM AZIDE, 100 % REMARK 210 D2O; 1 MM U-15N,13C GATB, 100 MM REMARK 210 PHOSPHATE BUFFER, 75 MM KCL, 75 REMARK 210 MM NACL, 1 MM DTT, 1 MM SODIUM REMARK 210 AZIDE, 5 MG/ML OF PF1 PHAGE, 90% REMARK 210 H2O, 10 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; MOTHER-NOESY (1H-13C REMARK 210 REGION); 3D_15N-SEPARATED_NOESY; REMARK 210 IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRVIEW 4.0, SPARKY REMARK 210 3.106 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR AND 3D HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 38 H ILE A 42 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 97.71 51.43 REMARK 500 1 HIS A 6 102.66 62.79 REMARK 500 1 HIS A 10 138.50 172.08 REMARK 500 1 HIS A 11 55.49 -96.90 REMARK 500 1 HIS A 12 90.93 -60.22 REMARK 500 1 GLN A 18 34.15 -84.39 REMARK 500 1 SER A 20 -67.80 66.21 REMARK 500 1 LYS A 21 -65.56 -164.44 REMARK 500 1 CYS A 28 -56.18 -150.53 REMARK 500 1 ALA A 33 -33.94 77.17 REMARK 500 1 ASN A 50 60.60 60.06 REMARK 500 1 GLU A 62 -35.93 -143.99 REMARK 500 1 MET A 67 49.80 -75.77 REMARK 500 1 ALA A 77 84.00 52.22 REMARK 500 1 ARG A 78 -60.24 -151.60 REMARK 500 1 ASP A 85 30.38 -156.41 REMARK 500 1 ILE A 86 104.22 -53.33 REMARK 500 1 PRO A 87 72.91 -69.17 REMARK 500 2 HIS A 6 78.97 -113.47 REMARK 500 2 LEU A 15 71.03 59.06 REMARK 500 2 TYR A 16 -53.30 -145.07 REMARK 500 2 GLN A 18 93.13 -166.53 REMARK 500 2 LYS A 21 -55.72 -132.38 REMARK 500 2 ALA A 31 -76.34 -82.03 REMARK 500 2 VAL A 32 -21.10 75.84 REMARK 500 2 PRO A 52 98.96 -55.45 REMARK 500 2 GLU A 62 -34.85 -153.90 REMARK 500 2 MET A 67 46.78 -77.03 REMARK 500 2 ALA A 77 -23.73 177.89 REMARK 500 2 VAL A 79 42.01 -77.51 REMARK 500 2 ASP A 85 18.77 -154.10 REMARK 500 2 ILE A 86 103.60 -55.85 REMARK 500 2 PRO A 87 74.41 -66.24 REMARK 500 3 HIS A 5 89.83 -158.52 REMARK 500 3 HIS A 7 48.23 -98.92 REMARK 500 3 HIS A 8 86.24 -154.29 REMARK 500 3 GLU A 13 119.01 66.49 REMARK 500 3 LEU A 15 -77.35 -75.83 REMARK 500 3 TYR A 16 106.10 179.56 REMARK 500 3 LYS A 21 -82.98 -144.71 REMARK 500 3 VAL A 32 -43.86 75.35 REMARK 500 3 ALA A 33 64.23 -153.40 REMARK 500 3 THR A 34 -40.23 -154.44 REMARK 500 3 ARG A 59 -163.89 -72.80 REMARK 500 3 ASN A 61 69.95 -151.30 REMARK 500 3 GLU A 62 -33.47 -150.05 REMARK 500 3 MET A 67 49.46 -74.36 REMARK 500 3 ALA A 77 -26.74 178.76 REMARK 500 3 VAL A 79 47.09 -74.91 REMARK 500 3 ASP A 85 22.36 -159.58 REMARK 500 REMARK 500 THIS ENTRY HAS 366 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PTKB_ECO57 RELATED DB: TARGETDB DBREF 1TVM A 21 113 UNP Q8X7H5 PTKB_ECOL6 2 94 SEQADV 1TVM MET A 1 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM GLY A 2 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM SER A 3 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM SER A 4 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 5 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 6 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 7 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 8 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 9 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 10 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 11 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM HIS A 12 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM GLU A 13 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM ASN A 14 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM LEU A 15 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM TYR A 16 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM PHE A 17 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM GLN A 18 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM GLY A 19 UNP Q8X7H5 EXPRESSION TAG SEQADV 1TVM SER A 20 UNP Q8X7H5 EXPRESSION TAG SEQRES 1 A 113 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 113 ASN LEU TYR PHE GLN GLY SER LYS ARG LYS ILE ILE VAL SEQRES 3 A 113 ALA CYS GLY GLY ALA VAL ALA THR SER THR MET ALA ALA SEQRES 4 A 113 GLU GLU ILE LYS GLU LEU CYS GLN SER HIS ASN ILE PRO SEQRES 5 A 113 VAL GLU LEU ILE GLN CYS ARG VAL ASN GLU ILE GLU THR SEQRES 6 A 113 TYR MET ASP GLY VAL HIS LEU ILE CYS THR THR ALA ARG SEQRES 7 A 113 VAL ASP ARG SER PHE GLY ASP ILE PRO LEU VAL HIS GLY SEQRES 8 A 113 MET PRO PHE VAL SER GLY VAL GLY ILE GLU ALA LEU GLN SEQRES 9 A 113 ASN LYS ILE LEU THR ILE LEU GLN GLY HELIX 1 1 ALA A 33 HIS A 49 1 17 HELIX 2 2 GLY A 91 GLY A 97 1 7 HELIX 3 3 GLY A 99 GLY A 113 1 15 SHEET 1 A 4 VAL A 53 CYS A 58 0 SHEET 2 A 4 ARG A 22 ALA A 27 1 N VAL A 26 O CYS A 58 SHEET 3 A 4 LEU A 72 THR A 75 1 O CYS A 74 N ALA A 27 SHEET 4 A 4 LEU A 88 VAL A 89 1 O VAL A 89 N ILE A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000