PDB Short entry for 1TZ8 HEADER TRANSPORT PROTEIN 09-JUL-04 1TZ8 TITLE THE MONOCLINIC CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH TITLE 2 DIETHYLSTILBESTROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PREALBUMIN, TBPA, TTR, ATTR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMYLOID, TRANSTHYRETIN, DIETHYLSTILBESTROL, PROTEIN STABILIZATION, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.MORAIS-DE-SA,P.J.B.PEREIRA,M.J.SARAIVA,A.M.DAMAS REVDAT 8 23-AUG-23 1TZ8 1 REMARK REVDAT 7 11-OCT-17 1TZ8 1 REMARK REVDAT 6 14-DEC-16 1TZ8 1 TITLE REVDAT 5 13-JUL-11 1TZ8 1 VERSN REVDAT 4 24-FEB-09 1TZ8 1 VERSN REVDAT 3 17-MAY-05 1TZ8 1 AUTHOR REVDAT 2 25-JAN-05 1TZ8 1 JRNL REVDAT 1 12-OCT-04 1TZ8 0 JRNL AUTH E.M.MORAIS-DE-SA,P.J.B.PEREIRA,M.J.SARAIVA,A.M.DAMAS JRNL TITL THE CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH JRNL TITL 2 DIETHYLSTILBESTROL: A PROMISING TEMPLATE FOR THE DESIGN OF JRNL TITL 3 AMYLOID INHIBITORS JRNL REF J.BIOL.CHEM. V. 279 53483 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15469931 JRNL DOI 10.1074/JBC.M408053200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARP/WARP V. 6.0 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 46540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOMLY SELECTED SUBSET OF REMARK 3 5% OF ALL REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2314 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.326 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 41.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : 0.21000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1F86 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE (0.2M), AMMONIUM REMARK 280 SULFATE (2.4M), GLYCEROL (7%), PH 5.4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.13550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.48050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.13550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.48050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 49.10046 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.74389 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.27100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CP3 DES C 129 LIES ON A SPECIAL POSITION. REMARK 375 OP3 DES C 129 LIES ON A SPECIAL POSITION. REMARK 375 CP3 DES D 128 LIES ON A SPECIAL POSITION. REMARK 375 OP3 DES D 128 LIES ON A SPECIAL POSITION. REMARK 375 HOH A4295 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 126 REMARK 465 GLU C 127 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 LYS D 9 REMARK 465 PRO D 125 REMARK 465 LYS D 126 REMARK 465 GLU D 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 10 N REMARK 470 ILE A 26 CD1 REMARK 470 LYS A 35 CE NZ REMARK 470 ALA A 37 O REMARK 470 ASP A 39 OD1 OD2 REMARK 470 THR A 40 OG1 CG2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 48 CE NZ REMARK 470 GLU A 51 CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 62 OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 70 NZ REMARK 470 GLU A 92 CD OE1 OE2 REMARK 470 ASP A 99 OD1 OD2 REMARK 470 ARG A 104 NE CZ NH1 NH2 REMARK 470 CYS B 10 N CB SG REMARK 470 ARG B 21 NH1 NH2 REMARK 470 ASP B 39 OD1 OD2 REMARK 470 THR B 40 OG1 CG2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 LYS B 48 NZ REMARK 470 GLU B 51 CD OE1 OE2 REMARK 470 GLU B 61 CD OE1 OE2 REMARK 470 GLU B 62 OE1 OE2 REMARK 470 GLU B 66 OE1 OE2 REMARK 470 ARG B 104 CD NE CZ NH1 NH2 REMARK 470 CYS C 10 SG REMARK 470 ARG C 34 NH1 NH2 REMARK 470 ALA C 37 CB REMARK 470 THR C 40 OG1 CG2 REMARK 470 GLU C 42 OE1 OE2 REMARK 470 LYS C 48 NZ REMARK 470 GLU C 51 OE1 OE2 REMARK 470 GLU C 63 OE1 OE2 REMARK 470 GLU C 66 OE1 OE2 REMARK 470 GLU C 72 CD OE1 OE2 REMARK 470 LYS C 80 NZ REMARK 470 ASP C 99 OD1 OD2 REMARK 470 ARG C 104 NE CZ NH1 NH2 REMARK 470 CYS D 10 CB SG REMARK 470 ARG D 34 NE CZ NH1 NH2 REMARK 470 LYS D 35 NZ REMARK 470 ALA D 36 CB REMARK 470 ALA D 37 CB REMARK 470 ASP D 39 OD1 OD2 REMARK 470 THR D 40 OG1 CG2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 LYS D 48 CD CE NZ REMARK 470 GLU D 51 OE1 OE2 REMARK 470 GLU D 61 CG CD OE1 OE2 REMARK 470 VAL D 65 CG1 CG2 REMARK 470 GLU D 66 CD OE1 OE2 REMARK 470 LYS D 70 NZ REMARK 470 LYS D 80 NZ REMARK 470 GLU D 92 CD OE1 OE2 REMARK 470 ASP D 99 OD1 OD2 REMARK 470 SER D 100 CB OG REMARK 470 ARG D 104 CD NE CZ NH1 NH2 REMARK 470 ASN D 124 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR D 60 OE1 GLU D 63 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 8.30 57.05 REMARK 500 ASP C 39 12.66 84.20 REMARK 500 HIS C 90 -179.24 -177.47 REMARK 500 SER D 100 46.62 -98.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 C 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DES B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DES C 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DES D 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 130 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TT6 RELATED DB: PDB REMARK 900 THE ORTHORHOMBIC CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH REMARK 900 DIETHYLSTILBESTROL DBREF 1TZ8 A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1TZ8 B 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1TZ8 C 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1TZ8 D 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 C 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 C 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 C 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 C 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 C 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 C 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 C 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 C 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 C 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 C 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 D 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 D 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 D 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 D 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 D 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 D 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 D 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 D 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 D 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 D 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET ACT A 128 4 HET DMS A 129 4 HET GOL A 130 7 HET DES B 128 20 HET CO3 C 128 4 HET DES C 129 20 HET DES D 128 20 HET GOL D 129 6 HETNAM ACT ACETATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM DES DIETHYLSTILBESTROL HETNAM CO3 CARBONATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 DMS C2 H6 O S FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 DES 3(C18 H20 O2) FORMUL 9 CO3 C O3 2- FORMUL 13 HOH *322(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 HELIX 3 3 ASP C 74 LEU C 82 1 9 HELIX 4 4 ASP D 74 LEU D 82 1 9 SHEET 1 A 3 SER A 23 PRO A 24 0 SHEET 2 A 3 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 3 GLU A 54 LEU A 55 -1 O LEU A 55 N VAL A 14 SHEET 1 B 4 SER A 23 PRO A 24 0 SHEET 2 B 4 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 B 4 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 B 4 SER A 115 THR A 123 -1 O SER A 117 N LEU A 110 SHEET 1 C 4 TRP A 41 LYS A 48 0 SHEET 2 C 4 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 C 4 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 C 4 ALA A 91 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 1 D 3 SER B 23 PRO B 24 0 SHEET 2 D 3 LEU B 12 ASP B 18 -1 N ASP B 18 O SER B 23 SHEET 3 D 3 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 E 4 SER B 23 PRO B 24 0 SHEET 2 E 4 LEU B 12 ASP B 18 -1 N ASP B 18 O SER B 23 SHEET 3 E 4 ARG B 104 SER B 112 1 O ILE B 107 N MET B 13 SHEET 4 E 4 SER B 115 THR B 123 -1 O THR B 123 N ARG B 104 SHEET 1 F 4 TRP B 41 LYS B 48 0 SHEET 2 F 4 ALA B 29 LYS B 35 -1 N VAL B 32 O PHE B 44 SHEET 3 F 4 GLY B 67 ILE B 73 -1 O GLU B 72 N HIS B 31 SHEET 4 F 4 ALA B 91 ALA B 97 -1 O ALA B 91 N ILE B 73 SHEET 1 G 8 SER C 23 PRO C 24 0 SHEET 2 G 8 LEU C 12 ASP C 18 -1 N ASP C 18 O SER C 23 SHEET 3 G 8 ARG C 104 SER C 112 1 O ILE C 107 N MET C 13 SHEET 4 G 8 SER C 115 THR C 123 -1 O SER C 117 N LEU C 110 SHEET 5 G 8 SER D 115 THR D 123 -1 O TYR D 116 N THR C 118 SHEET 6 G 8 ARG D 104 SER D 112 -1 N ARG D 104 O THR D 123 SHEET 7 G 8 LEU D 12 ASP D 18 1 N MET D 13 O ILE D 107 SHEET 8 G 8 SER D 23 PRO D 24 -1 O SER D 23 N ASP D 18 SHEET 1 H 8 GLU C 54 LEU C 55 0 SHEET 2 H 8 LEU C 12 ASP C 18 -1 N VAL C 14 O LEU C 55 SHEET 3 H 8 ARG C 104 SER C 112 1 O ILE C 107 N MET C 13 SHEET 4 H 8 SER C 115 THR C 123 -1 O SER C 117 N LEU C 110 SHEET 5 H 8 SER D 115 THR D 123 -1 O TYR D 116 N THR C 118 SHEET 6 H 8 ARG D 104 SER D 112 -1 N ARG D 104 O THR D 123 SHEET 7 H 8 LEU D 12 ASP D 18 1 N MET D 13 O ILE D 107 SHEET 8 H 8 GLU D 54 LEU D 55 -1 O LEU D 55 N VAL D 14 SHEET 1 I 4 TRP C 41 LYS C 48 0 SHEET 2 I 4 ALA C 29 LYS C 35 -1 N VAL C 32 O ALA C 45 SHEET 3 I 4 GLY C 67 ILE C 73 -1 O GLU C 72 N HIS C 31 SHEET 4 I 4 ALA C 91 ALA C 97 -1 O VAL C 93 N VAL C 71 SHEET 1 J 4 TRP D 41 LYS D 48 0 SHEET 2 J 4 ALA D 29 LYS D 35 -1 N VAL D 32 O ALA D 45 SHEET 3 J 4 GLY D 67 ILE D 73 -1 O GLU D 72 N HIS D 31 SHEET 4 J 4 ALA D 91 ALA D 97 -1 O ALA D 97 N GLY D 67 SITE 1 AC1 4 DMS A 129 ARG C 103 HOH C4134 HOH C4264 SITE 1 AC2 2 TRP A 41 GLU A 72 SITE 1 AC3 5 LYS A 80 GLY A 83 ARG C 21 CO3 C 128 SITE 2 AC3 5 TYR D 114 SITE 1 AC4 8 LEU A 17 ALA A 109 SER A 117 HOH A4295 SITE 2 AC4 8 LYS B 15 LEU B 17 ALA B 109 SER B 117 SITE 1 AC5 7 LEU C 17 ALA C 108 LEU C 110 SER C 117 SITE 2 AC5 7 SER D 117 DES D 128 GOL D 129 SITE 1 AC6 7 DES C 129 LYS D 15 LEU D 17 ALA D 108 SITE 2 AC6 7 ALA D 109 LEU D 110 SER D 117 SITE 1 AC7 9 SER C 115 SER C 117 DES C 129 LEU D 110 SITE 2 AC7 9 SER D 112 SER D 115 TYR D 116 SER D 117 SITE 3 AC7 9 HOH D4312 SITE 1 AC8 11 SER A 112 SER A 115 SER A 117 HOH A4322 SITE 2 AC8 11 ALA B 19 LEU B 110 LEU B 111 SER B 112 SITE 3 AC8 11 SER B 115 TYR B 116 SER B 117 CRYST1 74.271 96.961 81.717 90.00 107.94 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013464 0.000000 0.004359 0.00000 SCALE2 0.000000 0.010313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012863 0.00000