PDB Short entry for 1TZF HEADER TRANSFERASE 09-JUL-04 1TZF TITLE X-RAY CRYSTAL STRUCTURE OF ALPHA-D-GLUCOSE-1-PHOSPHATE TITLE 2 CYTIDYLYLTRANSFERASE FROM SALMONELLA TYPHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-D-GLUCOSE-1-PHOSPHATE CYTIDYLYLTRANSFERASE; CDP- COMPND 5 GLUCOSE PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.33; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: COMPLEXED WITH CYTIDYL-5'-PHOSPHATE-GLUCOSYL-6- COMPND 9 PHOSPHATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 220341; SOURCE 5 STRAIN: CT18; SOURCE 6 GENE: RFBF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEOTIDYLTRANSFERASE; MIXED ALPHA/BETA FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN,H.M.HOLDEN REVDAT 6 14-FEB-24 1TZF 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1TZF 1 VERSN REVDAT 4 24-FEB-09 1TZF 1 VERSN REVDAT 3 12-APR-05 1TZF 1 SOURCE REVDAT 2 22-MAR-05 1TZF 1 JRNL REVDAT 1 07-SEP-04 1TZF 0 JRNL AUTH N.M.KOROPATKIN,H.M.HOLDEN JRNL TITL MOLECULAR STRUCTURE OF ALPHA-D-GLUCOSE-1-PHOSPHATE JRNL TITL 2 CYTIDYLYLTRANSFERASE FROM SALMONELLA TYPHI JRNL REF J.BIOL.CHEM. V. 279 44023 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15292268 JRNL DOI 10.1074/JBC.M407755200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22358 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1990 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 22358 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.010 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.200 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 18.200; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96410 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 65.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, SODIUM REMARK 280 ACETATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.15000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.15000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.15000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 81.15000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.15000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A HEXAMER, GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: ROTATION MATRIX: - REMARK 300 0.50000 -0.86603 0.00000 0.86603 -0.50000 0.00001 -0.00001 0.00000 REMARK 300 1.00000 TRANSLATION VECTOR IN AS 0.00043 0.00017 0.00008 ROTATION REMARK 300 MATRIX: -0.50000 0.86602 0.00000 -0.86602 -0.50000 0.00000 0.00000 REMARK 300 0.00000 1.00000 TRANSLATION VECTOR IN AS 0.00046 0.00027 0.00009 REMARK 300 ROTATION MATRIX: -1.00000 0.00000 0.00000 0.00000 1.00000 0.00001 REMARK 300 0.00000 0.00001 -1.00000 TRANSLATION VECTOR IN AS 0.00020 -0.00001 REMARK 300 81.14987 ROTATION MATRIX: 0.50000 0.86602 0.00000 0.86602 -0.50000 REMARK 300 0.00000 0.00000 0.00000 -1.00000 TRANSLATION VECTOR IN AS 0.00082 REMARK 300 0.00015 81.15000 ROTATION MATRIX: 0.50000 -0.86603 0.00000 -0.86603 REMARK 300 -0.50000 0.00000 0.00000 0.00000 -1.00000 TRANSLATION VECTOR IN AS REMARK 300 0.00045 0.00058 81.14999 THESE ARE THE ROTATION AND TRANSLATION REMARK 300 OPERATIONS TO BE PERFORMED ON THE ORIGINAL MONOMER TO GENERATE THE REMARK 300 NEXT FIVE SUBUNITS OF THE COMPLETE HEXAMER 'P 63 2 2' 1 1 0 0 0 1 0 REMARK 300 0 0 1 0 0 0 0 0 0 'P 63 2 2' 3 0 -1 0 1 -1 0 0 0 1 0 0 0 0 0 0 'P REMARK 300 63 2 2' 5 -1 1 0 -1 0 0 0 0 1 0 0 0 0 0 0 'P 63 2 2' 7 1 -1 0 0 -1 REMARK 300 0 0 0 -1 0 0 0 0 0 0 'P 63 2 2' 9 -1 0 0 -1 1 0 0 0 -1 0 0 0 0 0 0 ' REMARK 300 P 63 2 2' 11 0 1 0 1 0 0 0 0 -1 0 0 0 0 0 0 'P 63 2 2' 2 1 -1 0 1 0 REMARK 300 0 0 0 1 0 0 0 0 1 2 'P 63 2 2' 4 -1 0 0 0 -1 0 0 0 1 0 0 0 0 1 2 'P REMARK 300 63 2 2' 6 0 1 0 -1 1 0 0 0 1 0 0 0 0 1 2 'P 63 2 2' 8 0 -1 0 -1 0 0 REMARK 300 0 0 -1 0 0 0 0 1 2 'P 63 2 2' 10 -1 1 0 0 1 0 0 0 -1 0 0 0 0 1 2 'P REMARK 300 63 2 2' 12 1 0 0 1 -1 0 0 0 -1 0 0 0 0 1 2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -216.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 81.15000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 81.15000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 81.15000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 THR A 20 REMARK 465 ILE A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 598 O HOH A 598 12555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 64 CD GLU A 64 OE2 0.068 REMARK 500 GLU A 93 CD GLU A 93 OE2 0.074 REMARK 500 GLU A 93 CD GLU A 93 OE2 0.084 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.068 REMARK 500 GLU A 123 CD GLU A 123 OE2 0.068 REMARK 500 GLU A 259 CD GLU A 259 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 104 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 122 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 122 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 131 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 137 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 183 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 236 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 23.01 -142.49 REMARK 500 PRO A 94 46.28 -73.45 REMARK 500 ASP A 135 45.83 -98.79 REMARK 500 LYS A 179 64.10 37.32 REMARK 500 LYS A 181 33.20 -62.55 REMARK 500 ASP A 183 17.49 -140.44 REMARK 500 PHE A 191 56.86 39.18 REMARK 500 GLU A 210 3.39 -69.93 REMARK 500 GLN A 211 -118.45 -101.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD2 REMARK 620 2 ASP A 236 OD1 89.7 REMARK 620 3 C5G A 401 O1A 81.7 106.0 REMARK 620 4 C5G A 401 O2B 160.8 106.0 83.3 REMARK 620 5 HOH A 663 O 79.8 155.7 94.3 89.4 REMARK 620 6 HOH A 664 O 109.7 81.8 166.5 84.0 81.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5G A 401 DBREF 1TZF A 4 259 UNP P26396 RFBF_SALTY 2 257 SEQADV 1TZF MET A 1 UNP P26396 CLONING ARTIFACT SEQADV 1TZF ALA A 2 UNP P26396 CLONING ARTIFACT SEQADV 1TZF SER A 3 UNP P26396 CLONING ARTIFACT SEQADV 1TZF GLN A 169 UNP P26396 ARG 167 CONFLICT SEQRES 1 A 259 MET ALA SER LYS ALA VAL ILE LEU ALA GLY GLY LEU GLY SEQRES 2 A 259 THR ARG LEU SER GLU GLU THR ILE VAL LYS PRO LYS PRO SEQRES 3 A 259 MET VAL GLU ILE GLY GLY LYS PRO ILE LEU TRP HIS ILE SEQRES 4 A 259 MET LYS MET TYR SER VAL HIS GLY ILE LYS ASP PHE ILE SEQRES 5 A 259 ILE CYS CYS GLY TYR LYS GLY TYR VAL ILE LYS GLU TYR SEQRES 6 A 259 PHE ALA ASN TYR PHE LEU HIS MET SER ASP VAL THR PHE SEQRES 7 A 259 HIS MET ALA GLU ASN ARG MET GLU VAL HIS HIS LYS ARG SEQRES 8 A 259 VAL GLU PRO TRP ASN VAL THR LEU VAL ASP THR GLY ASP SEQRES 9 A 259 SER SER MET THR GLY GLY ARG LEU LYS ARG VAL ALA GLU SEQRES 10 A 259 TYR VAL LYS ASP ASP GLU ALA PHE LEU PHE THR TYR GLY SEQRES 11 A 259 ASP GLY VAL ALA ASP LEU ASP ILE LYS ALA THR ILE ASP SEQRES 12 A 259 PHE HIS LYS ALA HIS GLY LYS LYS ALA THR LEU THR ALA SEQRES 13 A 259 THR PHE PRO PRO GLY ARG PHE GLY ALA LEU ASP ILE GLN SEQRES 14 A 259 ALA GLY GLN VAL ARG SER PHE GLN GLU LYS PRO LYS GLY SEQRES 15 A 259 ASP GLY ALA MET ILE ASN GLY GLY PHE PHE VAL LEU ASN SEQRES 16 A 259 PRO SER VAL ILE ASP LEU ILE ASP ASN ASP ALA THR THR SEQRES 17 A 259 TRP GLU GLN GLU PRO LEU MET THR LEU ALA GLN GLN GLY SEQRES 18 A 259 GLU LEU MET ALA PHE GLU HIS PRO GLY PHE TRP GLN PRO SEQRES 19 A 259 MET ASP THR LEU ARG ASP LYS VAL TYR LEU GLU GLY LEU SEQRES 20 A 259 TRP GLU LYS GLY LYS ALA PRO TRP LYS THR TRP GLU HET MG A 403 1 HET C5G A 401 36 HETNAM MG MAGNESIUM ION HETNAM C5G [CYTIDINE-5'-PHOSPHATE]-BETA-GLUCOSYL-PHOSPHORIC ACID HETNAM 2 C5G ESTER FORMUL 2 MG MG 2+ FORMUL 3 C5G C15 H25 N3 O16 P2 FORMUL 4 HOH *162(H2 O) HELIX 1 1 PRO A 24 MET A 27 5 4 HELIX 2 2 ILE A 35 HIS A 46 1 12 HELIX 3 3 LYS A 58 ASN A 68 1 11 HELIX 4 4 ASN A 68 SER A 74 1 7 HELIX 5 5 MET A 80 ASN A 83 5 4 HELIX 6 6 MET A 107 VAL A 115 1 9 HELIX 7 7 ALA A 116 VAL A 119 5 4 HELIX 8 8 ASP A 137 GLY A 149 1 13 HELIX 9 9 PRO A 196 ILE A 202 5 7 HELIX 10 10 GLN A 211 GLN A 220 1 10 HELIX 11 11 THR A 237 LYS A 250 1 14 SHEET 1 A 7 ASN A 96 ASP A 101 0 SHEET 2 A 7 ASP A 50 CYS A 55 1 N ILE A 53 O THR A 98 SHEET 3 A 7 LYS A 4 ALA A 9 1 N ILE A 7 O ILE A 52 SHEET 4 A 7 PHE A 125 TYR A 129 1 O LEU A 126 N LYS A 4 SHEET 5 A 7 PHE A 192 LEU A 194 -1 O LEU A 194 N PHE A 125 SHEET 6 A 7 ALA A 152 THR A 157 -1 N THR A 153 O VAL A 193 SHEET 7 A 7 ILE A 187 ASN A 188 -1 O ILE A 187 N THR A 157 SHEET 1 B 7 ASN A 96 ASP A 101 0 SHEET 2 B 7 ASP A 50 CYS A 55 1 N ILE A 53 O THR A 98 SHEET 3 B 7 LYS A 4 ALA A 9 1 N ILE A 7 O ILE A 52 SHEET 4 B 7 PHE A 125 TYR A 129 1 O LEU A 126 N LYS A 4 SHEET 5 B 7 PHE A 192 LEU A 194 -1 O LEU A 194 N PHE A 125 SHEET 6 B 7 ALA A 152 THR A 157 -1 N THR A 153 O VAL A 193 SHEET 7 B 7 LEU A 223 HIS A 228 1 O PHE A 226 N LEU A 154 SHEET 1 C 2 GLU A 29 ILE A 30 0 SHEET 2 C 2 LYS A 33 PRO A 34 -1 O LYS A 33 N ILE A 30 SHEET 1 D 2 VAL A 76 HIS A 79 0 SHEET 2 D 2 ARG A 84 VAL A 87 -1 O GLU A 86 N THR A 77 SHEET 1 E 2 GLY A 132 ALA A 134 0 SHEET 2 E 2 TRP A 232 PRO A 234 -1 O GLN A 233 N VAL A 133 SHEET 1 F 2 GLY A 164 GLN A 169 0 SHEET 2 F 2 GLN A 172 GLU A 178 -1 O GLN A 177 N ALA A 165 LINK OD2 ASP A 131 MG MG A 403 1555 1555 2.22 LINK OD1 ASP A 236 MG MG A 403 1555 1555 2.44 LINK O1A C5G A 401 MG MG A 403 1555 1555 1.93 LINK O2B C5G A 401 MG MG A 403 1555 1555 2.12 LINK MG MG A 403 O HOH A 663 1555 1555 1.94 LINK MG MG A 403 O HOH A 664 1555 1555 1.87 SITE 1 AC1 5 ASP A 131 ASP A 236 C5G A 401 HOH A 663 SITE 2 AC1 5 HOH A 664 SITE 1 AC2 24 LEU A 8 ALA A 9 GLY A 10 GLY A 11 SITE 2 AC2 24 LYS A 25 PRO A 26 SER A 106 ARG A 111 SITE 3 AC2 24 TYR A 129 GLY A 130 ASP A 131 PHE A 163 SITE 4 AC2 24 GLY A 164 GLU A 178 LYS A 179 ASN A 188 SITE 5 AC2 24 GLU A 210 TRP A 232 ASP A 236 MG A 403 SITE 6 AC2 24 HOH A 523 HOH A 613 HOH A 663 HOH A 664 CRYST1 88.500 88.500 162.300 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011299 0.006524 0.000000 0.00000 SCALE2 0.000000 0.013047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006161 0.00000