PDB Short entry for 1U31 HEADER OXIDOREDUCTASE 20-JUL-04 1U31 TITLE RECOMBINANT HUMAN HEART TRANSHYDROGENASE DIII BOUND WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P) TRANSHYDROGENASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE, NICOTINAMIDE COMPND 5 NUCLEOTIDE TRANSHYDROGENASE; COMPND 6 EC: 1.6.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NAD(P) TRANSHYDROGENASE, NADP+, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.C.MATHER,A.SINGH,G.I.VAN BOXEL,S.A.WHITE,J.B.JACKSON REVDAT 5 23-AUG-23 1U31 1 REMARK REVDAT 4 20-NOV-13 1U31 1 HETATM REVDAT 3 13-JUL-11 1U31 1 VERSN REVDAT 2 24-FEB-09 1U31 1 VERSN REVDAT 1 25-JAN-05 1U31 0 JRNL AUTH O.C.MATHER,A.SINGH,G.I.VAN BOXEL,S.A.WHITE,J.B.JACKSON JRNL TITL ACTIVE-SITE CONFORMATIONAL CHANGES ASSOCIATED WITH HYDRIDE JRNL TITL 2 TRANSFER IN PROTON-TRANSLOCATING TRANSHYDROGENASE. JRNL REF BIOCHEMISTRY V. 43 10952 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15323555 JRNL DOI 10.1021/BI0497594 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.394 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2924 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3988 ; 0.966 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 3.989 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;36.382 ;26.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;12.352 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 8.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2118 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1467 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1995 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 230 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.072 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1891 ; 0.321 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2938 ; 0.574 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1177 ; 0.337 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1050 ; 0.562 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6386 33.9762 16.1564 REMARK 3 T TENSOR REMARK 3 T11: -0.0162 T22: -0.0118 REMARK 3 T33: -0.0344 T12: 0.0133 REMARK 3 T13: 0.0032 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.6224 L22: 0.9941 REMARK 3 L33: 0.9840 L12: -0.1572 REMARK 3 L13: -0.0975 L23: 0.0606 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0172 S13: 0.0447 REMARK 3 S21: -0.0419 S22: 0.0199 S23: 0.0071 REMARK 3 S31: -0.0428 S32: -0.0964 S33: -0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 400 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0829 13.9846 15.1932 REMARK 3 T TENSOR REMARK 3 T11: -0.0291 T22: -0.0050 REMARK 3 T33: -0.0327 T12: 0.0133 REMARK 3 T13: -0.0102 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.9039 L22: 0.7478 REMARK 3 L33: 0.6504 L12: -0.2559 REMARK 3 L13: 0.2971 L23: -0.0627 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0060 S13: -0.0753 REMARK 3 S21: 0.0159 S22: -0.0093 S23: -0.0105 REMARK 3 S31: 0.0398 S32: 0.0745 S33: -0.0135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DJL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, MES, DIOXANE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.46700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.73350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 188.20050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.46700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 188.20050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.73350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 57.81400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 57.81400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 57.81400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.73350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 514 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 540 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 ASN A 7 REMARK 465 VAL A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 TYR A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 LYS A 22 REMARK 465 TYR A 205 REMARK 465 GLN A 206 REMARK 465 LYS A 207 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 ASN B 7 REMARK 465 VAL B 8 REMARK 465 ILE B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 TYR B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 THR B 18 REMARK 465 ALA B 19 REMARK 465 GLY B 20 REMARK 465 GLY B 21 REMARK 465 LYS B 22 REMARK 465 TYR B 205 REMARK 465 GLN B 206 REMARK 465 LYS B 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 165 O HOH A 518 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 130 -72.21 -147.57 REMARK 500 SER A 165 -156.90 -170.28 REMARK 500 ASN B 130 -72.84 -147.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DJL RELATED DB: PDB REMARK 900 HUMAN TRANSHYDROGENASE DIII WITH BOUND NADP+ REMARK 900 RELATED ID: 1PT9 RELATED DB: PDB REMARK 900 HUMAN TRANSHYDROGENAS DIII WITH BOUND THIO-NADP+ REMARK 900 RELATED ID: 1U28 RELATED DB: PDB REMARK 900 TRANSHYDROGENASE (DI.NAD+)2(DIII.NADP+)1 ASYMMETRIC COMPLEX REMARK 900 RELATED ID: 1U2D RELATED DB: PDB REMARK 900 TRANSHYDROGENASE (DI.NADH)2(DIII.NADPH)1 ASYMMETRIC COMPLEX REMARK 900 RELATED ID: 1U2G RELATED DB: PDB DBREF 1U31 A 1 207 UNP Q13423 NNTM_HUMAN 880 1086 DBREF 1U31 B 1 207 UNP Q13423 NNTM_HUMAN 880 1086 SEQRES 1 A 207 MET ASN ARG SER LEU ALA ASN VAL ILE LEU GLY GLY TYR SEQRES 2 A 207 GLY THR THR SER THR ALA GLY GLY LYS PRO MET GLU ILE SEQRES 3 A 207 SER GLY THR HIS THR GLU ILE ASN LEU ASP ASN ALA ILE SEQRES 4 A 207 ASP MET ILE ARG GLU ALA ASN SER ILE ILE ILE THR PRO SEQRES 5 A 207 GLY TYR GLY LEU CYS ALA ALA LYS ALA GLN TYR PRO ILE SEQRES 6 A 207 ALA ASP LEU VAL LYS MET LEU THR GLU GLN GLY LYS LYS SEQRES 7 A 207 VAL ARG PHE GLY ILE HIS PRO VAL ALA GLY ARG MET PRO SEQRES 8 A 207 GLY GLN LEU ASN VAL LEU LEU ALA GLU ALA GLY VAL PRO SEQRES 9 A 207 TYR ASP ILE VAL LEU GLU MET ASP GLU ILE ASN HIS ASP SEQRES 10 A 207 PHE PRO ASP THR ASP LEU VAL LEU VAL ILE GLY ALA ASN SEQRES 11 A 207 ASP THR VAL ASN SER ALA ALA GLN GLU ASP PRO ASN SER SEQRES 12 A 207 ILE ILE ALA GLY MET PRO VAL LEU GLU VAL TRP LYS SER SEQRES 13 A 207 LYS GLN VAL ILE VAL MET LYS ARG SER LEU GLY VAL GLY SEQRES 14 A 207 TYR ALA ALA VAL ASP ASN PRO ILE PHE TYR LYS PRO ASN SEQRES 15 A 207 THR ALA MET LEU LEU GLY ASP ALA LYS LYS THR CYS ASP SEQRES 16 A 207 ALA LEU GLN ALA LYS VAL ARG GLU SER TYR GLN LYS SEQRES 1 B 207 MET ASN ARG SER LEU ALA ASN VAL ILE LEU GLY GLY TYR SEQRES 2 B 207 GLY THR THR SER THR ALA GLY GLY LYS PRO MET GLU ILE SEQRES 3 B 207 SER GLY THR HIS THR GLU ILE ASN LEU ASP ASN ALA ILE SEQRES 4 B 207 ASP MET ILE ARG GLU ALA ASN SER ILE ILE ILE THR PRO SEQRES 5 B 207 GLY TYR GLY LEU CYS ALA ALA LYS ALA GLN TYR PRO ILE SEQRES 6 B 207 ALA ASP LEU VAL LYS MET LEU THR GLU GLN GLY LYS LYS SEQRES 7 B 207 VAL ARG PHE GLY ILE HIS PRO VAL ALA GLY ARG MET PRO SEQRES 8 B 207 GLY GLN LEU ASN VAL LEU LEU ALA GLU ALA GLY VAL PRO SEQRES 9 B 207 TYR ASP ILE VAL LEU GLU MET ASP GLU ILE ASN HIS ASP SEQRES 10 B 207 PHE PRO ASP THR ASP LEU VAL LEU VAL ILE GLY ALA ASN SEQRES 11 B 207 ASP THR VAL ASN SER ALA ALA GLN GLU ASP PRO ASN SER SEQRES 12 B 207 ILE ILE ALA GLY MET PRO VAL LEU GLU VAL TRP LYS SER SEQRES 13 B 207 LYS GLN VAL ILE VAL MET LYS ARG SER LEU GLY VAL GLY SEQRES 14 B 207 TYR ALA ALA VAL ASP ASN PRO ILE PHE TYR LYS PRO ASN SEQRES 15 B 207 THR ALA MET LEU LEU GLY ASP ALA LYS LYS THR CYS ASP SEQRES 16 B 207 ALA LEU GLN ALA LYS VAL ARG GLU SER TYR GLN LYS HET SO4 A 430 5 HET NDP A 300 48 HET GOL A 410 6 HET SO4 B 440 5 HET NDP B 400 48 HET GOL B 420 6 HETNAM SO4 SULFATE ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *218(H2 O) HELIX 1 1 ASN A 34 ALA A 45 1 12 HELIX 2 2 GLY A 53 LYS A 60 1 8 HELIX 3 3 ALA A 61 GLN A 75 1 15 HELIX 4 4 GLY A 92 ALA A 101 1 10 HELIX 5 5 PRO A 104 ASP A 106 5 3 HELIX 6 6 MET A 111 ASN A 115 1 5 HELIX 7 7 HIS A 116 THR A 121 5 6 HELIX 8 8 ASN A 130 ASN A 134 5 5 HELIX 9 9 SER A 135 ASP A 140 1 6 HELIX 10 10 GLU A 152 SER A 156 5 5 HELIX 11 11 ASN A 175 LYS A 180 5 6 HELIX 12 12 ASP A 189 GLU A 203 1 15 HELIX 13 13 ASN B 34 ALA B 45 1 12 HELIX 14 14 GLY B 53 ALA B 59 1 7 HELIX 15 15 ALA B 61 GLN B 75 1 15 HELIX 16 16 GLY B 92 GLY B 102 1 11 HELIX 17 17 PRO B 104 ASP B 106 5 3 HELIX 18 18 MET B 111 ASN B 115 1 5 HELIX 19 19 HIS B 116 THR B 121 5 6 HELIX 20 20 ASN B 130 ASN B 134 5 5 HELIX 21 21 SER B 135 ASP B 140 1 6 HELIX 22 22 GLU B 152 SER B 156 5 5 HELIX 23 23 ASN B 175 LYS B 180 5 6 HELIX 24 24 ASP B 189 GLU B 203 1 15 SHEET 1 A 6 VAL A 108 GLU A 110 0 SHEET 2 A 6 LYS A 78 ILE A 83 1 N ILE A 83 O LEU A 109 SHEET 3 A 6 SER A 47 PRO A 52 1 N ILE A 48 O LYS A 78 SHEET 4 A 6 LEU A 123 ILE A 127 1 O LEU A 123 N ILE A 49 SHEET 5 A 6 GLN A 158 LYS A 163 1 O MET A 162 N VAL A 126 SHEET 6 A 6 THR A 183 LEU A 187 1 O ALA A 184 N VAL A 159 SHEET 1 B 6 VAL B 108 GLU B 110 0 SHEET 2 B 6 LYS B 78 ILE B 83 1 N ILE B 83 O LEU B 109 SHEET 3 B 6 SER B 47 PRO B 52 1 N ILE B 48 O LYS B 78 SHEET 4 B 6 LEU B 123 ILE B 127 1 O LEU B 125 N ILE B 49 SHEET 5 B 6 GLN B 158 LYS B 163 1 O MET B 162 N VAL B 126 SHEET 6 B 6 THR B 183 LEU B 187 1 O ALA B 184 N VAL B 159 SITE 1 AC1 1 ARG A 164 SITE 1 AC2 2 ARG B 164 HOH B 552 SITE 1 AC3 33 TYR A 54 GLY A 55 ALA A 59 VAL A 86 SITE 2 AC3 33 ALA A 87 GLY A 88 ARG A 89 MET A 90 SITE 3 AC3 33 PRO A 91 GLY A 128 ALA A 129 ASN A 130 SITE 4 AC3 33 ASP A 131 THR A 132 ALA A 146 GLY A 147 SITE 5 AC3 33 MET A 148 LYS A 163 ARG A 164 SER A 165 SITE 6 AC3 33 VAL A 168 GLY A 169 TYR A 170 GLY A 188 SITE 7 AC3 33 ASP A 189 ALA A 190 GOL A 410 HOH A 432 SITE 8 AC3 33 HOH A 433 HOH A 437 HOH A 442 HOH A 453 SITE 9 AC3 33 HOH A 518 SITE 1 AC4 30 GLY B 53 TYR B 54 GLY B 55 ALA B 59 SITE 2 AC4 30 VAL B 86 ALA B 87 GLY B 88 ARG B 89 SITE 3 AC4 30 MET B 90 PRO B 91 GLY B 128 ALA B 129 SITE 4 AC4 30 ASN B 130 ASP B 131 THR B 132 LYS B 163 SITE 5 AC4 30 ARG B 164 SER B 165 VAL B 168 GLY B 169 SITE 6 AC4 30 TYR B 170 ASP B 189 ALA B 190 GOL B 420 SITE 7 AC4 30 HOH B 466 HOH B 468 HOH B 479 HOH B 514 SITE 8 AC4 30 HOH B 552 HOH B 557 SITE 1 AC5 7 HIS A 84 VAL A 86 ASP A 131 ILE A 145 SITE 2 AC5 7 PRO A 149 VAL A 150 NDP A 300 SITE 1 AC6 7 HIS B 84 ASP B 131 ILE B 145 MET B 148 SITE 2 AC6 7 NDP B 400 HOH B 468 HOH B 526 CRYST1 57.814 57.814 250.934 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003985 0.00000