PDB Short entry for 1U41 HEADER TRANSCRIPTION 23-JUL-04 1U41 TITLE CRYSTAL STRUCTURE OF YLGV MUTANT OF DIMERISATION DOMAIN OF NF-KB P50 TITLE 2 TRANSCRIPTION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DIMERIZATION DOMAIN; COMPND 5 SYNONYM: NF-KB P50 TRANSCRIPTION FACTOR; DNA-BINDING FACTOR KBF1; COMPND 6 EBP- 1; NF-KAPPA-B1 P84/NF-KAPPA-B1 P98 [CONTAINS: NUCLEAR FACTOR NF- COMPND 7 KAPPA-B P50 SUBUNIT]; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NFKB1, 18033; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TRANSCRIPTION FACTOR; NF-KB; DIMERIZATION DOMAIN; INTERTWINED KEYWDS 2 FOLDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI REVDAT 5 23-AUG-23 1U41 1 REMARK REVDAT 4 20-OCT-21 1U41 1 SEQADV REVDAT 3 01-FEB-17 1U41 1 TITLE VERSN REVDAT 2 24-FEB-09 1U41 1 VERSN REVDAT 1 17-AUG-04 1U41 0 JRNL AUTH D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI JRNL TITL SNAPSHOT OF PROTEIN STRUCTURE EVOLUTION REVEALS CONSERVATION JRNL TITL 2 OF FUNCTIONAL DIMERIZATION THROUGH INTERTWINED FOLDING JRNL REF STRUCTURE V. 12 1489 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15296742 JRNL DOI 10.1016/J.STR.2004.06.011 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 19850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.332 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3382 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3028 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4557 ; 1.522 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7080 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 6.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 484 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3700 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 716 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 630 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3596 ; 0.255 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1957 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 238 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 102 ; 0.333 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 3.015 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3272 ; 4.004 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1370 ; 3.682 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 5.172 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 69.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BFS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULPHATE, REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.80100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.43200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.79300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.43200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.80100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.79300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAINS A AND B COMPRIZE THE BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 245 REMARK 465 SER A 246 REMARK 465 GLN A 279 REMARK 465 ALA B 245 REMARK 465 SER B 246 REMARK 465 GLU B 287 REMARK 465 ASN B 288 REMARK 465 GLY B 289 REMARK 465 ALA C 245 REMARK 465 SER C 246 REMARK 465 ASN C 247 REMARK 465 GLU C 285 REMARK 465 GLU C 286 REMARK 465 GLU C 287 REMARK 465 ASN C 288 REMARK 465 GLY C 289 REMARK 465 GLY C 290 REMARK 465 GLU D 287 REMARK 465 ASN D 288 REMARK 465 GLY D 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ASN A 288 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 332 O HOH A 443 1.86 REMARK 500 O HOH A 367 O HOH A 435 1.92 REMARK 500 O HOH B 363 O HOH B 414 1.99 REMARK 500 NE ARG A 252 O HOH A 458 1.99 REMARK 500 OH TYR B 267 O HOH A 458 2.06 REMARK 500 O HOH C 355 O HOH C 465 2.15 REMARK 500 O HOH A 363 O HOH A 431 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 255 O HOH C 418 2564 2.00 REMARK 500 OE2 GLU D 341 O HOH B 370 3645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 277 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 302 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 271 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG C 281 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP D 297 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 287 87.29 42.66 REMARK 500 ASN A 288 9.54 83.51 REMARK 500 LEU A 337 11.14 54.41 REMARK 500 LEU B 337 14.15 55.67 REMARK 500 PRO C 349 150.12 -44.31 REMARK 500 GLN D 306 -6.39 74.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 286 GLU A 287 137.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U36 RELATED DB: PDB REMARK 900 RELATED ID: 1U3J RELATED DB: PDB REMARK 900 RELATED ID: 1U3Y RELATED DB: PDB REMARK 900 RELATED ID: 1U3Z RELATED DB: PDB REMARK 900 RELATED ID: 1U42 RELATED DB: PDB DBREF 1U41 A 245 350 UNP P25799 NFKB1_MOUSE 245 350 DBREF 1U41 B 245 350 UNP P25799 NFKB1_MOUSE 245 350 DBREF 1U41 C 245 350 UNP P25799 NFKB1_MOUSE 245 350 DBREF 1U41 D 245 350 UNP P25799 NFKB1_MOUSE 245 350 SEQADV 1U41 GLY A 308 UNP P25799 ALA 308 ENGINEERED MUTATION SEQADV 1U41 GLY B 308 UNP P25799 ALA 308 ENGINEERED MUTATION SEQADV 1U41 GLY C 308 UNP P25799 ALA 308 ENGINEERED MUTATION SEQADV 1U41 GLY D 308 UNP P25799 ALA 308 ENGINEERED MUTATION SEQRES 1 A 106 ALA SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA SEQRES 2 A 106 GLY CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS SEQRES 3 A 106 ASP LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR SEQRES 4 A 106 GLU GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY SEQRES 5 A 106 ASP PHE SER PRO THR ASP VAL HIS ARG GLN PHE GLY ILE SEQRES 6 A 106 VAL PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR SEQRES 7 A 106 LYS PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER SEQRES 8 A 106 ASP LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR SEQRES 9 A 106 PRO GLU SEQRES 1 B 106 ALA SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA SEQRES 2 B 106 GLY CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS SEQRES 3 B 106 ASP LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR SEQRES 4 B 106 GLU GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY SEQRES 5 B 106 ASP PHE SER PRO THR ASP VAL HIS ARG GLN PHE GLY ILE SEQRES 6 B 106 VAL PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR SEQRES 7 B 106 LYS PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER SEQRES 8 B 106 ASP LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR SEQRES 9 B 106 PRO GLU SEQRES 1 C 106 ALA SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA SEQRES 2 C 106 GLY CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS SEQRES 3 C 106 ASP LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR SEQRES 4 C 106 GLU GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY SEQRES 5 C 106 ASP PHE SER PRO THR ASP VAL HIS ARG GLN PHE GLY ILE SEQRES 6 C 106 VAL PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR SEQRES 7 C 106 LYS PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER SEQRES 8 C 106 ASP LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR SEQRES 9 C 106 PRO GLU SEQRES 1 D 106 ALA SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA SEQRES 2 D 106 GLY CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS SEQRES 3 D 106 ASP LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR SEQRES 4 D 106 GLU GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY SEQRES 5 D 106 ASP PHE SER PRO THR ASP VAL HIS ARG GLN PHE GLY ILE SEQRES 6 D 106 VAL PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR SEQRES 7 D 106 LYS PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER SEQRES 8 D 106 ASP LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR SEQRES 9 D 106 PRO GLU FORMUL 5 HOH *385(H2 O) HELIX 1 1 SER A 299 VAL A 303 5 5 HELIX 2 2 SER B 299 VAL B 303 5 5 HELIX 3 3 SER C 299 VAL C 303 5 5 HELIX 4 4 SER D 299 THR D 301 5 3 SHEET 1 A 3 ILE A 250 MET A 253 0 SHEET 2 A 3 GLU A 265 CYS A 270 -1 O LEU A 269 N ARG A 252 SHEET 3 A 3 GLY A 308 LYS A 312 -1 O PHE A 311 N ILE A 266 SHEET 1 B 5 ALA A 257 CYS A 259 0 SHEET 2 B 5 LYS A 343 TYR A 348 1 O LEU A 346 N GLY A 258 SHEET 3 B 5 ALA A 325 GLN A 330 -1 N VAL A 329 O LYS A 343 SHEET 4 B 5 ARG A 281 GLU A 286 -1 N ARG A 281 O GLN A 330 SHEET 5 B 5 GLY A 290 PHE A 295 -1 O GLY A 294 N PHE A 282 SHEET 1 C 3 ILE B 250 MET B 253 0 SHEET 2 C 3 GLU B 265 CYS B 270 -1 O LEU B 269 N ARG B 252 SHEET 3 C 3 GLY B 308 LYS B 312 -1 O PHE B 311 N ILE B 266 SHEET 1 D 5 ALA B 257 CYS B 259 0 SHEET 2 D 5 LYS B 343 TYR B 348 1 O LEU B 346 N GLY B 258 SHEET 3 D 5 ALA B 325 ARG B 332 -1 N VAL B 327 O PHE B 345 SHEET 4 D 5 GLN B 279 GLU B 284 -1 N ARG B 281 O GLN B 330 SHEET 5 D 5 TRP B 292 PHE B 295 -1 O GLY B 294 N PHE B 282 SHEET 1 E 3 ILE C 250 MET C 253 0 SHEET 2 E 3 GLU C 265 CYS C 270 -1 O LEU C 269 N ARG C 252 SHEET 3 E 3 GLY C 308 LYS C 312 -1 O PHE C 311 N ILE C 266 SHEET 1 F 5 ALA C 257 CYS C 259 0 SHEET 2 F 5 LYS C 343 TYR C 348 1 O TYR C 348 N GLY C 258 SHEET 3 F 5 ALA C 325 ARG C 333 -1 N VAL C 327 O PHE C 345 SHEET 4 F 5 ILE C 278 TYR C 283 -1 N TYR C 283 O PHE C 328 SHEET 5 F 5 GLU C 293 PHE C 295 -1 O GLY C 294 N PHE C 282 SHEET 1 G 4 ILE D 250 MET D 253 0 SHEET 2 G 4 GLU D 265 CYS D 270 -1 O LEU D 269 N ARG D 252 SHEET 3 G 4 GLY D 308 LYS D 312 -1 O PHE D 311 N ILE D 266 SHEET 4 G 4 VAL D 303 HIS D 304 -1 N HIS D 304 O GLY D 308 SHEET 1 H 5 ALA D 257 CYS D 259 0 SHEET 2 H 5 LYS D 343 TYR D 348 1 O LEU D 346 N GLY D 258 SHEET 3 H 5 ALA D 325 ARG D 332 -1 N VAL D 327 O PHE D 345 SHEET 4 H 5 GLN D 279 GLU D 284 -1 N ARG D 281 O GLN D 330 SHEET 5 H 5 TRP D 292 PHE D 295 -1 O GLY D 294 N PHE D 282 CRYST1 39.602 73.586 138.864 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007201 0.00000