PDB Short entry for 1U5H HEADER LYASE 27-JUL-04 1U5H TITLE STRUCTURE OF CITRATE LYASE BETA SUBUNIT FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CITRATE LYASE BETA SUBUNIT; COMPND 5 EC: 4.1.3.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV2498C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TIM BARREL, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.GOULDING,T.LEKIN,C.Y.KIM,B.SEGELKE,T.C.TERWILLIGER,D.EISENBERG,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 7 14-FEB-24 1U5H 1 REMARK REVDAT 6 20-OCT-21 1U5H 1 REMARK SEQADV REVDAT 5 09-JUN-09 1U5H 1 REVDAT REVDAT 4 24-FEB-09 1U5H 1 VERSN REVDAT 3 02-DEC-08 1U5H 1 JRNL REVDAT 2 01-FEB-05 1U5H 1 AUTHOR KEYWDS REMARK REVDAT 1 12-OCT-04 1U5H 0 JRNL AUTH C.W.GOULDING,P.M.BOWERS,B.SEGELKE,T.LEKIN,C.Y.KIM, JRNL AUTH 2 T.C.TERWILLIGER,D.EISENBERG JRNL TITL THE STRUCTURE AND COMPUTATIONAL ANALYSIS OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS PROTEIN CITE SUGGEST A NOVEL ENZYMATIC JRNL TITL 3 FUNCTION. JRNL REF J.MOL.BIOL. V. 365 275 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17064730 JRNL DOI 10.1016/J.JMB.2006.09.086 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2122760.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 41560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4213 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6331 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 730 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -3.84000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.027 REMARK 3 BOND ANGLES (DEGREES) : 2.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.44 REMARK 3 BSOL : 58.37 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ATP.PARAM REMARK 3 PARAMETER FILE 4 : FMT.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ATP.TOP REMARK 3 TOPOLOGY FILE 4 : FMT.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1U5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(220) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5589 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, DMSO, PH 8.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 45.60700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.33121 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 73.74433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 45.60700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.33121 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 73.74433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 45.60700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.33121 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 73.74433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 45.60700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.33121 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 73.74433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 45.60700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.33121 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 73.74433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 45.60700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.33121 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 73.74433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.66243 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 147.48867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 52.66243 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 147.48867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 52.66243 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 147.48867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 52.66243 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 147.48867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 52.66243 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 147.48867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 52.66243 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 147.48867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 91.21400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 45.60700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 78.99364 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 HIS A 225 REMARK 465 GLU A 226 REMARK 465 LYS A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 TRP A 230 REMARK 465 ALA A 231 REMARK 465 ARG A 232 REMARK 465 ARG A 233 REMARK 465 VAL A 234 REMARK 465 LEU A 235 REMARK 465 ALA A 236 REMARK 465 ALA A 237 REMARK 465 SER A 238 REMARK 465 ARG A 239 REMARK 465 SER A 240 REMARK 465 GLU A 241 REMARK 465 ARG A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 PHE A 245 REMARK 465 ALA A 246 REMARK 465 PHE A 247 REMARK 465 GLU A 248 REMARK 465 GLY A 249 REMARK 465 GLN A 250 REMARK 465 MET A 251 REMARK 465 VAL A 252 REMARK 465 ASP A 253 REMARK 465 SER A 254 REMARK 465 PRO A 255 REMARK 465 VAL A 256 REMARK 465 LEU A 257 REMARK 465 THR A 258 REMARK 465 HIS A 259 REMARK 465 ALA A 260 REMARK 465 GLU A 261 REMARK 465 THR A 262 REMARK 465 MET A 263 REMARK 465 LEU A 264 REMARK 465 ARG A 265 REMARK 465 ARG A 266 REMARK 465 ALA A 267 REMARK 465 GLY A 268 REMARK 465 GLU A 269 REMARK 465 ALA A 270 REMARK 465 THR A 271 REMARK 465 SER A 272 REMARK 465 GLU A 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 330 O HOH A 365 2.04 REMARK 500 OD1 ASP A 37 O HOH A 408 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 157 CD ARG A 160 3665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 41 CG GLU A 41 CD 0.623 REMARK 500 VAL A 216 CB VAL A 216 CG1 -0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 41 CB - CG - CD ANGL. DEV. = 56.1 DEGREES REMARK 500 GLU A 41 CG - CD - OE1 ANGL. DEV. = -45.2 DEGREES REMARK 500 GLU A 41 CG - CD - OE2 ANGL. DEV. = 40.7 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 160 CG - CD - NE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 160 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 36 -127.86 -96.32 REMARK 500 GLU A 112 29.00 -153.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 160 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 274 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV2498C RELATED DB: TARGETDB DBREF 1U5H A 1 273 UNP O06162 O06162_MYCTU 1 273 SEQADV 1U5H ALA A 17 UNP O06162 ARG 17 ENGINEERED MUTATION SEQADV 1U5H ALA A 20 UNP O06162 ARG 20 ENGINEERED MUTATION SEQADV 1U5H ALA A 23 UNP O06162 LYS 23 ENGINEERED MUTATION SEQADV 1U5H ALA A 222 UNP O06162 ARG 222 ENGINEERED MUTATION SEQADV 1U5H ALA A 223 UNP O06162 PRO 223 ENGINEERED MUTATION SEQRES 1 A 273 MET ASN LEU ARG ALA ALA GLY PRO GLY TRP LEU PHE CYS SEQRES 2 A 273 PRO ALA ASP ALA PRO GLU ALA PHE ALA ALA ALA ALA ALA SEQRES 3 A 273 ALA ALA ASP VAL VAL ILE LEU ASP LEU GLU ASP GLY VAL SEQRES 4 A 273 ALA GLU ALA GLN LYS PRO ALA ALA ARG ASN ALA LEU ARG SEQRES 5 A 273 ASP THR PRO LEU ASP PRO GLU ARG THR VAL VAL ARG ILE SEQRES 6 A 273 ASN ALA GLY GLY THR ALA ASP GLN ALA ARG ASP LEU GLU SEQRES 7 A 273 ALA LEU ALA GLY THR ALA TYR THR THR VAL MET LEU PRO SEQRES 8 A 273 LYS ALA GLU SER ALA ALA GLN VAL ILE GLU LEU ALA PRO SEQRES 9 A 273 ARG ASP VAL ILE ALA LEU VAL GLU THR ALA ARG GLY ALA SEQRES 10 A 273 VAL CYS ALA ALA GLU ILE ALA ALA ALA ASP PRO THR VAL SEQRES 11 A 273 GLY MET MET TRP GLY ALA GLU ASP LEU ILE ALA THR LEU SEQRES 12 A 273 GLY GLY SER SER SER ARG ARG ALA ASP GLY ALA TYR ARG SEQRES 13 A 273 ASP VAL ALA ARG HIS VAL ARG SER THR ILE LEU LEU ALA SEQRES 14 A 273 ALA SER ALA PHE GLY ARG LEU ALA LEU ASP ALA VAL HIS SEQRES 15 A 273 LEU ASP ILE LEU ASP VAL GLU GLY LEU GLN GLU GLU ALA SEQRES 16 A 273 ARG ASP ALA ALA ALA VAL GLY PHE ASP VAL THR VAL CYS SEQRES 17 A 273 ILE HIS PRO SER GLN ILE PRO VAL VAL ARG LYS ALA TYR SEQRES 18 A 273 ALA ALA SER HIS GLU LYS LEU ALA TRP ALA ARG ARG VAL SEQRES 19 A 273 LEU ALA ALA SER ARG SER GLU ARG GLY ALA PHE ALA PHE SEQRES 20 A 273 GLU GLY GLN MET VAL ASP SER PRO VAL LEU THR HIS ALA SEQRES 21 A 273 GLU THR MET LEU ARG ARG ALA GLY GLU ALA THR SER GLU HET FMT A 274 3 HETNAM FMT FORMIC ACID FORMUL 2 FMT C H2 O2 FORMUL 3 HOH *156(H2 O) HELIX 1 1 ALA A 17 GLU A 19 5 3 HELIX 2 2 ALA A 20 ALA A 28 1 9 HELIX 3 3 ALA A 40 ALA A 42 5 3 HELIX 4 4 GLN A 43 THR A 54 1 12 HELIX 5 5 THR A 70 GLY A 82 1 13 HELIX 6 6 SER A 95 GLU A 101 1 7 HELIX 7 7 THR A 113 CYS A 119 1 7 HELIX 8 8 CYS A 119 ALA A 126 1 8 HELIX 9 9 GLY A 135 GLY A 144 1 10 HELIX 10 10 ARG A 156 PHE A 173 1 18 HELIX 11 11 ASP A 187 GLY A 202 1 16 HELIX 12 12 HIS A 210 SER A 212 5 3 HELIX 13 13 GLN A 213 TYR A 221 1 9 SHEET 1 A 9 GLY A 9 PRO A 14 0 SHEET 2 A 9 VAL A 30 ASP A 34 1 O ILE A 32 N CYS A 13 SHEET 3 A 9 THR A 61 ARG A 64 1 O VAL A 62 N VAL A 31 SHEET 4 A 9 THR A 87 LEU A 90 1 O MET A 89 N VAL A 63 SHEET 5 A 9 ASP A 106 VAL A 111 1 O ILE A 108 N VAL A 88 SHEET 6 A 9 THR A 129 TRP A 134 1 O VAL A 130 N VAL A 107 SHEET 7 A 9 LEU A 176 ASP A 179 1 O LEU A 178 N MET A 132 SHEET 8 A 9 VAL A 205 CYS A 208 1 O VAL A 205 N ASP A 179 SHEET 9 A 9 GLY A 9 PRO A 14 1 N TRP A 10 O CYS A 208 CISPEP 1 ALA A 103 PRO A 104 0 7.51 SITE 1 AC1 2 ASP A 157 ARG A 160 CRYST1 91.214 91.214 221.233 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010963 0.006330 0.000000 0.00000 SCALE2 0.000000 0.012659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004520 0.00000