PDB Short entry for 1UGI HEADER HYDROLASE INHIBITOR 04-NOV-98 1UGI TITLE URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE INHIBITOR; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 SYNONYM: UGI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PBS2; SOURCE 3 ORGANISM_TAXID: 10684; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PKK223-3; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PZWTAC1; SOURCE 12 EXPRESSION_SYSTEM_GENE: TAC KEYWDS PROTEIN MIMICRY OF DNA, PROTEIN INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR C.D.PUTNAM,A.S.ARVAI,C.D.MOL,J.A.TAINER REVDAT 6 03-APR-24 1UGI 1 REMARK REVDAT 5 27-DEC-23 1UGI 1 REMARK REVDAT 4 24-FEB-09 1UGI 1 VERSN REVDAT 3 01-MAR-05 1UGI 1 HEADER DBREF REMARK REVDAT 2 01-APR-03 1UGI 1 JRNL REVDAT 1 25-MAR-99 1UGI 0 JRNL AUTH C.D.PUTNAM,M.J.SHROYER,A.J.LUNDQUIST,C.D.MOL,A.S.ARVAI, JRNL AUTH 2 D.W.MOSBAUGH,J.A.TAINER JRNL TITL PROTEIN MIMICRY OF DNA FROM CRYSTAL STRUCTURES OF THE JRNL TITL 2 URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN AND ITS COMPLEX JRNL TITL 3 WITH ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE JRNL REF J.MOL.BIOL. V. 287 331 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10080896 JRNL DOI 10.1006/JMBI.1999.2605 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.222 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 9346 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 86111 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.204 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 561 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 24 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 24407 REMARK 3 NUMBER OF RESTRAINTS : 22880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 ANGLE DISTANCES (A) : 1.970 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: BABINET'S PRINCIPLE SCALING REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: ORTHORHOMBIC CRYSTAL FORM OF FREE UGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.2, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7, 8 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 8 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 465 MET G 1 REMARK 465 MET H 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 48 O HOH B 2524 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 39 -159.62 -129.90 REMARK 500 SER D 39 -154.27 -154.83 REMARK 500 ASP D 40 153.58 -49.93 REMARK 500 ASP H 40 150.66 -49.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD E 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD E 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD F 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD H 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD H 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD E 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD F 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD G 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 1017 DBREF 1UGI A 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI B 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI C 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI D 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI E 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI F 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI G 1 84 UNP P14739 UNGI_BPPB2 1 84 DBREF 1UGI H 1 84 UNP P14739 UNGI_BPPB2 1 84 SEQRES 1 A 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 A 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 A 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 A 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 A 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 A 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 A 84 ASN LYS ILE LYS MET LEU SEQRES 1 B 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 B 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 B 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 B 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 B 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 B 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 B 84 ASN LYS ILE LYS MET LEU SEQRES 1 C 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 C 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 C 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 C 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 C 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 C 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 C 84 ASN LYS ILE LYS MET LEU SEQRES 1 D 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 D 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 D 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 D 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 D 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 D 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 D 84 ASN LYS ILE LYS MET LEU SEQRES 1 E 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 E 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 E 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 E 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 E 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 E 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 E 84 ASN LYS ILE LYS MET LEU SEQRES 1 F 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 F 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 F 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 F 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 F 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 F 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 F 84 ASN LYS ILE LYS MET LEU SEQRES 1 G 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 G 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 G 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 G 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 G 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 G 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 G 84 ASN LYS ILE LYS MET LEU SEQRES 1 H 84 MET THR ASN LEU SER ASP ILE ILE GLU LYS GLU THR GLY SEQRES 2 H 84 LYS GLN LEU VAL ILE GLN GLU SER ILE LEU MET LEU PRO SEQRES 3 H 84 GLU GLU VAL GLU GLU VAL ILE GLY ASN LYS PRO GLU SER SEQRES 4 H 84 ASP ILE LEU VAL HIS THR ALA TYR ASP GLU SER THR ASP SEQRES 5 H 84 GLU ASN VAL MET LEU LEU THR SER ASP ALA PRO GLU TYR SEQRES 6 H 84 LYS PRO TRP ALA LEU VAL ILE GLN ASP SER ASN GLY GLU SEQRES 7 H 84 ASN LYS ILE LYS MET LEU HET SO4 A1100 5 HET IMD B1007 5 HET IMD B1008 5 HET SO4 C1103 5 HET IMD C1006 5 HET IMD C1009 5 HET IMD C1015 5 HET IMD C1017 5 HET SO4 D1104 5 HET IMD D1004 5 HET IMD D1005 5 HET IMD D1010 5 HET SO4 E1101 5 HET SO4 E1105 5 HET IMD E1000 5 HET IMD E1001 5 HET IMD E1002 5 HET IMD E1013 5 HET IMD F1003 5 HET IMD F1014 5 HET SO4 G1102 5 HET IMD G1016 5 HET IMD H1011 5 HET IMD H1012 5 HETNAM SO4 SULFATE ION HETNAM IMD IMIDAZOLE FORMUL 9 SO4 6(O4 S 2-) FORMUL 10 IMD 18(C3 H5 N2 1+) FORMUL 33 HOH *561(H2 O) HELIX 1 1 ASN A 3 THR A 12 1 10 HELIX 2 2 PRO A 26 ILE A 33 1 8 HELIX 3 3 ASN B 3 THR B 12 1 10 HELIX 4 4 PRO B 26 ILE B 33 1 8 HELIX 5 5 ASN C 3 THR C 12 1 10 HELIX 6 6 PRO C 26 ILE C 33 1 8 HELIX 7 7 LEU D 4 THR D 12 1 9 HELIX 8 8 PRO D 26 ILE D 33 1 8 HELIX 9 9 ASN E 3 THR E 12 1 10 HELIX 10 10 PRO E 26 ILE E 33 1 8 HELIX 11 11 GLU E 49 THR E 51 5 3 HELIX 12 12 LEU F 4 THR F 12 1 9 HELIX 13 13 PRO F 26 ILE F 33 1 8 HELIX 14 14 ASN G 3 THR G 12 1 10 HELIX 15 15 PRO G 26 ILE G 33 1 8 HELIX 16 16 ASN H 3 THR H 12 1 10 HELIX 17 17 PRO H 26 ILE H 33 1 8 SHEET 1 A 5 ILE A 22 MET A 24 0 SHEET 2 A 5 ILE A 41 ASP A 48 -1 N VAL A 43 O ILE A 22 SHEET 3 A 5 GLU A 53 SER A 60 -1 N THR A 59 O LEU A 42 SHEET 4 A 5 PRO A 67 GLN A 73 -1 N GLN A 73 O ASN A 54 SHEET 5 A 5 ASN A 79 MET A 83 -1 N LYS A 82 O LEU A 70 SHEET 1 B 5 ILE B 22 MET B 24 0 SHEET 2 B 5 ILE B 41 ASP B 48 -1 N VAL B 43 O ILE B 22 SHEET 3 B 5 GLU B 53 SER B 60 -1 N THR B 59 O LEU B 42 SHEET 4 B 5 PRO B 67 GLN B 73 -1 N GLN B 73 O ASN B 54 SHEET 5 B 5 ASN B 79 MET B 83 -1 N LYS B 82 O LEU B 70 SHEET 1 C 5 ILE C 22 MET C 24 0 SHEET 2 C 5 ILE C 41 ASP C 48 -1 N VAL C 43 O ILE C 22 SHEET 3 C 5 GLU C 53 SER C 60 -1 N THR C 59 O LEU C 42 SHEET 4 C 5 PRO C 67 GLN C 73 -1 N GLN C 73 O ASN C 54 SHEET 5 C 5 ASN C 79 MET C 83 -1 N LYS C 82 O LEU C 70 SHEET 1 D 5 ILE D 22 MET D 24 0 SHEET 2 D 5 ILE D 41 ASP D 48 -1 N VAL D 43 O ILE D 22 SHEET 3 D 5 GLU D 53 SER D 60 -1 N THR D 59 O LEU D 42 SHEET 4 D 5 PRO D 67 GLN D 73 -1 N GLN D 73 O ASN D 54 SHEET 5 D 5 ASN D 79 MET D 83 -1 N LYS D 82 O LEU D 70 SHEET 1 E 5 ILE E 22 MET E 24 0 SHEET 2 E 5 ILE E 41 ASP E 48 -1 N VAL E 43 O ILE E 22 SHEET 3 E 5 GLU E 53 SER E 60 -1 N THR E 59 O LEU E 42 SHEET 4 E 5 PRO E 67 GLN E 73 -1 N GLN E 73 O ASN E 54 SHEET 5 E 5 ASN E 79 MET E 83 -1 N LYS E 82 O LEU E 70 SHEET 1 F 5 ILE F 22 MET F 24 0 SHEET 2 F 5 ILE F 41 ASP F 48 -1 N VAL F 43 O ILE F 22 SHEET 3 F 5 GLU F 53 SER F 60 -1 N THR F 59 O LEU F 42 SHEET 4 F 5 PRO F 67 GLN F 73 -1 N GLN F 73 O ASN F 54 SHEET 5 F 5 ASN F 79 MET F 83 -1 N LYS F 82 O LEU F 70 SHEET 1 G 5 ILE G 22 MET G 24 0 SHEET 2 G 5 ILE G 41 ASP G 48 -1 N VAL G 43 O ILE G 22 SHEET 3 G 5 GLU G 53 SER G 60 -1 N THR G 59 O LEU G 42 SHEET 4 G 5 PRO G 67 GLN G 73 -1 N GLN G 73 O ASN G 54 SHEET 5 G 5 ASN G 79 MET G 83 -1 N LYS G 82 O LEU G 70 SHEET 1 H 5 ILE H 22 MET H 24 0 SHEET 2 H 5 ILE H 41 ASP H 48 -1 N VAL H 43 O ILE H 22 SHEET 3 H 5 GLU H 53 SER H 60 -1 N THR H 59 O LEU H 42 SHEET 4 H 5 PRO H 67 GLN H 73 -1 N GLN H 73 O ASN H 54 SHEET 5 H 5 ASN H 79 MET H 83 -1 N LYS H 82 O LEU H 70 CISPEP 1 ALA A 62 PRO A 63 0 1.58 CISPEP 2 ALA B 62 PRO B 63 0 -1.92 CISPEP 3 ALA C 62 PRO C 63 0 -4.70 CISPEP 4 ALA D 62 PRO D 63 0 7.35 CISPEP 5 ALA E 62 PRO E 63 0 1.06 CISPEP 6 ALA F 62 PRO F 63 0 -0.42 CISPEP 7 ALA G 62 PRO G 63 0 -5.28 CISPEP 8 ALA H 62 PRO H 63 0 5.88 SITE 1 AC1 5 GLY A 34 ASN A 35 LYS A 36 HOH A2004 SITE 2 AC1 5 HOH A2554 SITE 1 AC2 6 GLY E 34 ASN E 35 LYS E 36 HOH E2318 SITE 2 AC2 6 HOH E2361 HOH E2462 SITE 1 AC3 4 ASN G 35 LYS G 36 HOH G2360 HOH G2523 SITE 1 AC4 3 ASN C 35 LYS C 36 HOH C2520 SITE 1 AC5 4 SER D 21 TYR D 65 IMD D1004 HOH D2021 SITE 1 AC6 3 MET E 24 VAL E 43 MET E 56 SITE 1 AC7 7 GLY E 77 ASN E 79 GLU F 78 LEU G 23 SITE 2 AC7 7 LEU G 25 GLU G 28 IMD G1016 SITE 1 AC8 6 LYS E 82 MET E 83 HOH E2127 ILE F 33 SITE 2 AC8 6 ASN F 35 ILE F 81 SITE 1 AC9 7 LEU E 23 LEU E 25 GLU E 28 GLN G 73 SITE 2 AC9 7 GLY G 77 ASN G 79 GLU H 78 SITE 1 BC1 8 SER F 21 LEU F 42 GLN H 73 ASP H 74 SITE 2 BC1 8 SER H 75 GLY H 77 HOH H2200 HOH H2392 SITE 1 BC2 8 GLN B 73 ASP B 74 SER B 75 HOH B2042 SITE 2 BC2 8 SER D 21 LEU D 42 SO4 D1104 HOH D2383 SITE 1 BC3 5 ILE C 33 ILE D 72 GLU D 78 LYS D 80 SITE 2 BC3 5 HOH D2260 SITE 1 BC4 5 LEU A 23 GLU A 28 GLY C 77 ASN C 79 SITE 2 BC4 5 GLU D 78 SITE 1 BC5 7 ILE A 33 ILE B 72 ASP B 74 GLU B 78 SITE 2 BC5 7 LYS B 80 HOH B2267 HOH B2326 SITE 1 BC6 5 GLY A 77 ASN A 79 GLU B 78 LEU C 25 SITE 2 BC6 5 GLU C 28 SITE 1 BC7 6 GLN A 73 ASP A 74 SER A 75 GLY A 77 SITE 2 BC7 6 SER C 21 LEU C 42 SITE 1 BC8 4 SER B 21 GLN D 73 ASP D 74 SER D 75 SITE 1 BC9 4 GLN F 73 GLY F 77 SER H 21 LEU H 42 SITE 1 CC1 5 ILE G 33 GLU H 53 ILE H 72 GLU H 78 SITE 2 CC1 5 LYS H 80 SITE 1 CC2 5 SER E 21 LEU E 42 HOH E2086 GLN G 73 SITE 2 CC2 5 SER G 75 SITE 1 CC3 5 ILE E 33 ILE F 72 ASP F 74 GLU F 78 SITE 2 CC3 5 LYS F 80 SITE 1 CC4 5 LYS C 82 MET C 83 HOH C2225 ASN D 35 SITE 2 CC4 5 ILE D 81 SITE 1 CC5 6 GLN E 73 ASN E 79 IMD E1000 LEU G 23 SITE 2 CC5 6 MET G 24 GLU G 28 SITE 1 CC6 1 HOH A2212 CRYST1 47.800 59.400 79.800 73.67 85.55 66.46 P 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020920 -0.009114 0.000901 0.00000 SCALE2 0.000000 0.018363 -0.005226 0.00000 SCALE3 0.000000 0.000000 0.013068 0.00000 MTRIX1 1 -0.997370 -0.052620 0.049890 -0.81482 1 MTRIX2 1 0.039550 -0.971430 -0.234020 -0.41685 1 MTRIX3 1 0.060780 -0.231430 0.970950 -3.70572 1 MTRIX1 2 0.633290 0.773890 0.006760 37.43958 1 MTRIX2 2 0.773280 -0.633100 0.035030 25.45655 1 MTRIX3 2 0.031380 -0.016960 -0.999360 13.69368 1 MTRIX1 3 -0.671920 -0.737090 -0.072220 35.80038 1 MTRIX2 3 -0.730190 0.643000 0.231040 25.01386 1 MTRIX3 3 -0.123860 0.207980 -0.970260 17.28484 1 MTRIX1 4 0.675900 0.731200 -0.092270 20.89913 1 MTRIX2 4 -0.733250 0.679780 0.015730 36.73870 1 MTRIX3 4 0.074230 0.057020 0.995610 37.46319 1 MTRIX1 5 -0.661310 -0.732570 -0.161290 19.75451 1 MTRIX2 5 0.748400 -0.629860 -0.207770 37.03503 1 MTRIX3 5 0.050620 -0.258110 0.964790 33.25365 1 MTRIX1 6 0.994050 0.054430 0.094330 31.35763 1 MTRIX2 6 0.056630 -0.998180 -0.020880 61.91470 1 MTRIX3 6 0.093020 0.026100 -0.995320 50.99107 1 MTRIX1 7 -0.990260 -0.007360 0.139000 30.39630 1 MTRIX2 7 0.022580 0.976890 0.212550 62.24492 1 MTRIX3 7 -0.137360 0.213620 -0.967210 54.83612 1