PDB Short entry for 1UGV HEADER PROTEIN BINDING 20-JUN-03 1UGV TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN OF HUMAN OLYGOPHREIN-1 LIKE TITLE 2 PROTEIN (KIAA0621) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLYGOPHRENIN-1 LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: KIAA0621; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HG04539; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021021-18; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA BARREL, GRAF PROTEIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE,T.YABUKI, AUTHOR 2 M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA,A.TANAKA,T.OSANAI, AUTHOR 3 Y.MATSUO,O.OHARA,T.NAGASE,R.KIKUNO,M.NAKAYAMA,S.YOKOYAMA,RIKEN AUTHOR 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1UGV 1 REMARK REVDAT 3 02-MAR-22 1UGV 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UGV 1 VERSN REVDAT 1 20-DEC-03 1UGV 0 JRNL AUTH K.INOUE,F.HAYASHI,M.SHIROUZU,T.TERADA,T.KIGAWA,M.INOUE, JRNL AUTH 2 T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA,H.HIROTA,M.YOSHIDA, JRNL AUTH 3 A.TANAKA,T.OSANAI,Y.MATSUO,O.OHARA,T.NAGASE,R.KIKUNO, JRNL AUTH 4 M.NAKAYAMA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF HUMAN OLYGOPHREIN-1 JRNL TITL 2 LIKE PROTEIN (KIAA0621) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UGV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005809. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM SH3 DOMAIN U-15N,13C; 20MM REMARK 210 TRIS BUFFER NA; 100MM NACL; 1MM REMARK 210 D10-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.816, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 15 H GLY A 32 1.58 REMARK 500 O HIS A 39 H GLU A 48 1.58 REMARK 500 H LEU A 47 O ILE A 58 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 96.42 66.44 REMARK 500 1 PHE A 10 179.08 56.96 REMARK 500 1 LYS A 20 64.54 -106.61 REMARK 500 1 ASN A 37 79.79 40.24 REMARK 500 1 ASN A 52 74.89 59.66 REMARK 500 1 SER A 67 -55.42 -130.67 REMARK 500 1 SER A 70 -58.23 -158.48 REMARK 500 1 SER A 71 170.18 59.94 REMARK 500 2 SER A 2 81.43 41.10 REMARK 500 2 SER A 5 74.88 66.58 REMARK 500 2 PHE A 10 168.50 54.30 REMARK 500 2 ALA A 21 178.64 -50.18 REMARK 500 2 GLU A 22 -35.71 178.86 REMARK 500 2 SER A 25 37.92 -145.33 REMARK 500 2 ASN A 37 77.55 43.29 REMARK 500 2 SER A 41 -171.72 -59.78 REMARK 500 2 ASN A 52 75.75 59.59 REMARK 500 2 GLU A 64 88.72 -151.25 REMARK 500 2 SER A 70 109.22 -51.51 REMARK 500 3 SER A 2 -58.42 -149.38 REMARK 500 3 SER A 5 90.10 44.33 REMARK 500 3 SER A 6 -63.25 -143.04 REMARK 500 3 PHE A 10 177.33 58.50 REMARK 500 3 ALA A 21 88.66 -61.07 REMARK 500 3 ASN A 37 83.83 40.72 REMARK 500 3 SER A 41 -173.39 -64.92 REMARK 500 3 ASN A 52 71.04 60.87 REMARK 500 3 TYR A 62 12.28 -140.30 REMARK 500 3 SER A 67 167.11 59.60 REMARK 500 4 ALA A 21 178.95 -52.88 REMARK 500 4 GLU A 22 -34.58 176.24 REMARK 500 4 ASP A 24 -64.86 83.93 REMARK 500 4 ASN A 37 85.82 41.02 REMARK 500 4 SER A 41 -178.07 -61.38 REMARK 500 4 ASN A 52 76.38 61.31 REMARK 500 4 TYR A 62 15.90 -141.64 REMARK 500 4 GLU A 64 86.32 -154.90 REMARK 500 4 PHE A 65 131.33 -38.97 REMARK 500 4 LEU A 66 -62.96 -91.32 REMARK 500 4 SER A 70 90.09 57.21 REMARK 500 5 SER A 3 -56.12 -142.01 REMARK 500 5 SER A 5 107.01 -160.55 REMARK 500 5 THR A 8 163.07 61.54 REMARK 500 5 PHE A 10 162.38 57.97 REMARK 500 5 ALA A 21 178.28 -50.60 REMARK 500 5 GLU A 22 -41.69 -166.81 REMARK 500 5 HIS A 23 -86.25 -63.20 REMARK 500 5 ASP A 24 -50.49 -179.41 REMARK 500 5 ASN A 37 87.40 52.31 REMARK 500 5 SER A 41 -167.98 -62.00 REMARK 500 REMARK 500 THIS ENTRY HAS 226 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK001000008.1 RELATED DB: TARGETDB DBREF 1UGV A 8 66 UNP Q9UNA1 RHG26_HUMAN 756 814 SEQADV 1UGV GLY A 1 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 2 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 3 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV GLY A 4 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 5 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 6 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV GLY A 7 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 67 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV GLY A 68 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV PRO A 69 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 70 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV SER A 71 UNP Q9UNA1 CLONING ARTIFACT SEQADV 1UGV GLY A 72 UNP Q9UNA1 CLONING ARTIFACT SEQRES 1 A 72 GLY SER SER GLY SER SER GLY THR PRO PHE ARG LYS ALA SEQRES 2 A 72 LYS ALA LEU TYR ALA CYS LYS ALA GLU HIS ASP SER GLU SEQRES 3 A 72 LEU SER PHE THR ALA GLY THR VAL PHE ASP ASN VAL HIS SEQRES 4 A 72 PRO SER GLN GLU PRO GLY TRP LEU GLU GLY THR LEU ASN SEQRES 5 A 72 GLY LYS THR GLY LEU ILE PRO GLU ASN TYR VAL GLU PHE SEQRES 6 A 72 LEU SER GLY PRO SER SER GLY SHEET 1 A 3 VAL A 34 PHE A 35 0 SHEET 2 A 3 ALA A 13 ALA A 15 -1 N ALA A 13 O PHE A 35 SHEET 3 A 3 VAL A 63 PHE A 65 -1 O GLU A 64 N LYS A 14 SHEET 1 B 2 TRP A 46 THR A 50 0 SHEET 2 B 2 THR A 55 PRO A 59 -1 O ILE A 58 N LEU A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000