PDB Short entry for 1UH0 HEADER SUGAR BINDING PROTEIN 23-JUN-03 1UH0 TITLE CRYSTAL STRUCTURE OF JACALIN- ME-ALPHA-GALNAC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: JACALIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AGGLUTININ BETA-3 CHAIN; COMPND 7 CHAIN: B, D, F, H; COMPND 8 SYNONYM: JACALIN BETA-3 CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 ORGAN: SEEDS; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 7 ORGANISM_TAXID: 3490; SOURCE 8 ORGAN: SEEDS KEYWDS ALL BETA SHEET PROTEIN, BETA-PRISM I FOLD, GAL SPECIFIC, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA,M.VIJAYAN REVDAT 5 25-OCT-23 1UH0 1 HETSYN REVDAT 4 29-JUL-20 1UH0 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 1UH0 1 VERSN REVDAT 2 24-FEB-09 1UH0 1 VERSN REVDAT 1 23-SEP-03 1UH0 0 JRNL AUTH A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA, JRNL AUTH 2 M.VIJAYAN JRNL TITL STRUCTURAL BASIS OF THE CARBOHYDRATE SPECIFICITIES OF JRNL TITL 2 JACALIN: AN X-RAY AND MODELING STUDY JRNL REF J.MOL.BIOL. V. 332 217 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12946359 JRNL DOI 10.1016/S0022-2836(03)00901-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.A.JEYAPRAKASH,P.G.RANI,G.B.REDDY,S.BANUMATHI,C.BETZEL, REMARK 1 AUTH 2 K.SEKAR,A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURE OF THE JACALIN-T-ANTIGEN COMPLEX AND A REMARK 1 TITL 2 COMPARATIVE STUDY OF LECTIN-T-ANTIGEN COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 321 637 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)00674-5 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.SANKARANARAYANAN,K.SEKAR,R.BANERJEE,V.SHARMA,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A REMARK 1 TITL 2 MORACEAE PLANT LECTIN WITH A BETA-PRISM FOLD REMARK 1 REF NAT.STRUCT.BIOL. V. 3 596 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 154416.340 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 19485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2987 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 6.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.600 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.650 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.360; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 43.89 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS1.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : MGN_PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000005814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19864 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NACL, SODIUM AZIDE, REMARK 280 PHOSPHATE BUFFER, PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.68467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.84233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.26350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.42117 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 132.10583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.68467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.84233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.42117 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.26350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 132.10583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.26350 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 64.90550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 112.41962 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 184.94817 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 64.90550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 112.41962 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -105.68467 REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 132.10583 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 ASP D 1 REMARK 465 GLU D 2 REMARK 465 GLN D 3 REMARK 465 VAL D 19 REMARK 465 SER D 20 REMARK 465 ASP F 1 REMARK 465 GLU F 2 REMARK 465 GLN F 3 REMARK 465 VAL F 19 REMARK 465 SER F 20 REMARK 465 ASP H 1 REMARK 465 GLU H 2 REMARK 465 GLN H 3 REMARK 465 VAL H 19 REMARK 465 SER H 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 18 NZ LYS B 18 10665 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 22 CB GLU A 22 CG -0.119 REMARK 500 TYR A 64 CG TYR A 64 CD2 -0.117 REMARK 500 TYR A 64 CG TYR A 64 CD1 -0.114 REMARK 500 TYR A 64 CE1 TYR A 64 CZ -0.095 REMARK 500 TYR A 64 CZ TYR A 64 CE2 -0.131 REMARK 500 PHE A 86 CG PHE A 86 CD2 -0.112 REMARK 500 PHE A 86 CG PHE A 86 CD1 -0.097 REMARK 500 PHE A 86 CE1 PHE A 86 CZ -0.254 REMARK 500 PHE A 86 CZ PHE A 86 CE2 -0.245 REMARK 500 LYS C 2 CE LYS C 2 NZ -0.172 REMARK 500 TYR C 64 CG TYR C 64 CD2 -0.100 REMARK 500 TYR C 64 CG TYR C 64 CD1 -0.110 REMARK 500 TYR C 64 CE1 TYR C 64 CZ -0.124 REMARK 500 TYR C 64 CZ TYR C 64 CE2 -0.133 REMARK 500 PHE C 86 CG PHE C 86 CD2 -0.112 REMARK 500 PHE C 86 CG PHE C 86 CD1 -0.094 REMARK 500 PHE C 86 CE1 PHE C 86 CZ -0.252 REMARK 500 PHE C 86 CZ PHE C 86 CE2 -0.231 REMARK 500 TYR C 122 CG TYR C 122 CD2 -0.149 REMARK 500 TYR C 122 CG TYR C 122 CD1 -0.118 REMARK 500 TYR C 122 CE1 TYR C 122 CZ -0.160 REMARK 500 TYR C 122 CZ TYR C 122 CE2 -0.157 REMARK 500 GLU E 22 CB GLU E 22 CG -0.163 REMARK 500 GLU E 22 CD GLU E 22 OE2 0.126 REMARK 500 TYR E 64 CG TYR E 64 CD2 -0.099 REMARK 500 TYR E 64 CG TYR E 64 CD1 -0.111 REMARK 500 TYR E 64 CE1 TYR E 64 CZ -0.123 REMARK 500 TYR E 64 CZ TYR E 64 CE2 -0.138 REMARK 500 PHE E 86 CG PHE E 86 CD2 -0.105 REMARK 500 PHE E 86 CG PHE E 86 CD1 -0.098 REMARK 500 PHE E 86 CE1 PHE E 86 CZ -0.240 REMARK 500 PHE E 86 CZ PHE E 86 CE2 -0.239 REMARK 500 TYR G 64 CG TYR G 64 CD2 -0.095 REMARK 500 TYR G 64 CG TYR G 64 CD1 -0.115 REMARK 500 TYR G 64 CE1 TYR G 64 CZ -0.114 REMARK 500 TYR G 64 CZ TYR G 64 CE2 -0.148 REMARK 500 PHE G 86 CG PHE G 86 CD2 -0.100 REMARK 500 PHE G 86 CG PHE G 86 CD1 -0.107 REMARK 500 PHE G 86 CE1 PHE G 86 CZ -0.241 REMARK 500 PHE G 86 CZ PHE G 86 CE2 -0.256 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 PHE A 86 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LYS C 2 CD - CE - NZ ANGL. DEV. = -25.7 DEGREES REMARK 500 ASP C 5 CB - CG - OD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP C 59 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP C 59 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR C 122 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 GLU E 22 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 ASP E 59 CB - CG - OD1 ANGL. DEV. = 23.7 DEGREES REMARK 500 ASP E 59 CB - CG - OD2 ANGL. DEV. = -20.5 DEGREES REMARK 500 ASP G 59 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP G 59 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -90.46 -112.87 REMARK 500 ALA A 24 -166.26 -163.03 REMARK 500 ASP C 5 101.63 -162.35 REMARK 500 THR C 23 -90.18 -109.97 REMARK 500 ALA C 24 -162.56 -164.74 REMARK 500 THR E 23 -94.51 -111.96 REMARK 500 ALA E 24 -163.87 -161.45 REMARK 500 ASP E 59 61.66 -66.71 REMARK 500 THR G 23 -90.73 -111.14 REMARK 500 ALA G 24 -164.34 -163.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN - T-ANTIGEN COMPLEX REMARK 900 RELATED ID: 1JAC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JACALIN - ME-ALPHA-GAL COMPLEX REMARK 900 RELATED ID: 1UGW RELATED DB: PDB REMARK 900 JACALIN - GAL COMPLEX REMARK 900 RELATED ID: 1UGX RELATED DB: PDB REMARK 900 JACALIN - ME-ALPHA-T-ANTIGEN (GAL-BETA-GALNAC-ALPHA-O-ME) COMPLEX REMARK 900 RELATED ID: 1UGY RELATED DB: PDB REMARK 900 JACALIN - MELLIBIOSE (GAL-ALPHA(1-6)-GLC) COMPLEX REMARK 900 RELATED ID: 1UH1 RELATED DB: PDB REMARK 900 JACALIN - GALNAC-BETA(1-3)-GAL-ALPHA-O-ME COMPLEX DBREF 1UH0 A 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UH0 C 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UH0 E 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UH0 G 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 1UH0 B 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UH0 D 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UH0 F 1 20 UNP P18673 LEC3_ARTIN 1 20 DBREF 1UH0 H 1 20 UNP P18673 LEC3_ARTIN 1 20 SEQADV 1UH0 LYS B 6 UNP P18673 ILE 6 CONFLICT SEQADV 1UH0 LYS D 6 UNP P18673 ILE 6 CONFLICT SEQADV 1UH0 LYS F 6 UNP P18673 ILE 6 CONFLICT SEQADV 1UH0 LYS H 6 UNP P18673 ILE 6 CONFLICT SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 20 ASP GLU GLN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 B 20 PRO TRP GLY ALA LYS VAL SER SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 20 ASP GLU GLN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 D 20 PRO TRP GLY ALA LYS VAL SER SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 20 ASP GLU GLN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 F 20 PRO TRP GLY ALA LYS VAL SER SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 20 ASP GLU GLN SER GLY LYS SER GLN THR VAL ILE VAL GLY SEQRES 2 H 20 PRO TRP GLY ALA LYS VAL SER HET MGC A1200 16 HET MGC C2200 16 HET MGC E3200 16 HET MGC G4200 16 HETNAM MGC METHYL 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSIDE HETSYN MGC ALPHA-METHYL-N-ACETYL-D-GALACTOSAMINE; METHYL 2- HETSYN 2 MGC ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOSIDE; METHYL 2- HETSYN 3 MGC ACETAMIDO-2-DEOXY-D-GALACTOSIDE; METHYL 2-ACETAMIDO-2- HETSYN 4 MGC DEOXY-GALACTOSIDE FORMUL 9 MGC 4(C9 H17 N O6) FORMUL 13 HOH *109(H2 O) SHEET 1 A 8 LYS A 2 ASP A 5 0 SHEET 2 A 8 LEU A 112 ILE A 120 -1 O ILE A 120 N LYS A 2 SHEET 3 A 8 LEU A 124 SER A 132 -1 O SER A 128 N LYS A 117 SHEET 4 A 8 VAL B 10 GLY B 16 -1 O VAL B 12 N MET A 129 SHEET 5 A 8 THR C 102 ASN C 110 -1 O ASN C 110 N ILE B 11 SHEET 6 A 8 ILE C 65 VAL C 75 -1 N VAL C 68 O LEU C 106 SHEET 7 A 8 TYR C 78 THR C 88 -1 O LYS C 87 N GLU C 67 SHEET 8 A 8 THR C 92 GLY C 97 -1 O TYR C 93 N PHE C 86 SHEET 1 B 4 SER A 37 VAL A 40 0 SHEET 2 B 4 ILE A 25 LEU A 34 -1 N LEU A 34 O SER A 37 SHEET 3 B 4 GLY A 11 TYR A 19 -1 N GLU A 14 O VAL A 31 SHEET 4 B 4 THR A 52 SER A 57 -1 O THR A 52 N TYR A 19 SHEET 1 C 8 THR A 92 GLY A 97 0 SHEET 2 C 8 TYR A 78 THR A 88 -1 N PHE A 86 O TYR A 93 SHEET 3 C 8 ILE A 65 VAL A 75 -1 N GLU A 67 O LYS A 87 SHEET 4 C 8 THR A 102 ASN A 110 -1 O LEU A 106 N VAL A 68 SHEET 5 C 8 VAL D 10 GLY D 16 -1 O ILE D 11 N ASN A 110 SHEET 6 C 8 LEU C 124 SER C 132 -1 N MET C 129 O VAL D 12 SHEET 7 C 8 LEU C 112 ILE C 120 -1 N LEU C 112 O SER C 132 SHEET 8 C 8 LYS C 2 ASP C 5 -1 N LYS C 2 O ILE C 120 SHEET 1 D 4 SER C 37 VAL C 40 0 SHEET 2 D 4 ILE C 25 LEU C 34 -1 N LEU C 34 O SER C 37 SHEET 3 D 4 GLY C 11 TYR C 19 -1 N ASN C 16 O GLN C 29 SHEET 4 D 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 E 8 LYS E 2 ASP E 5 0 SHEET 2 E 8 LEU E 112 ILE E 120 -1 O ILE E 120 N LYS E 2 SHEET 3 E 8 LEU E 124 SER E 132 -1 O SER E 132 N LEU E 112 SHEET 4 E 8 VAL F 10 GLY F 16 -1 O VAL F 10 N LEU E 131 SHEET 5 E 8 THR G 102 ASN G 110 -1 O ASN G 110 N ILE F 11 SHEET 6 E 8 ILE G 65 VAL G 75 -1 N VAL G 68 O LEU G 106 SHEET 7 E 8 TYR G 78 THR G 88 -1 O THR G 85 N SER G 69 SHEET 8 E 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 F 4 SER E 37 VAL E 40 0 SHEET 2 F 4 ILE E 25 LEU E 34 -1 N LEU E 34 O SER E 37 SHEET 3 F 4 GLY E 11 TYR E 19 -1 N GLU E 14 O VAL E 31 SHEET 4 F 4 THR E 52 SER E 57 -1 O THR E 52 N TYR E 19 SHEET 1 G 8 THR E 92 GLY E 97 0 SHEET 2 G 8 TYR E 78 THR E 88 -1 N PHE E 86 O TYR E 93 SHEET 3 G 8 ILE E 65 VAL E 75 -1 N SER E 69 O THR E 85 SHEET 4 G 8 THR E 102 ASN E 110 -1 O LEU E 106 N VAL E 68 SHEET 5 G 8 VAL H 10 GLY H 16 -1 O ILE H 11 N ASN E 110 SHEET 6 G 8 LEU G 124 SER G 132 -1 N MET G 129 O VAL H 12 SHEET 7 G 8 LEU G 112 ILE G 120 -1 N LEU G 112 O SER G 132 SHEET 8 G 8 LYS G 2 ASP G 5 -1 N LYS G 2 O ILE G 120 SHEET 1 H 4 SER G 37 VAL G 40 0 SHEET 2 H 4 ILE G 25 LEU G 34 -1 N LEU G 34 O SER G 37 SHEET 3 H 4 GLY G 11 TYR G 19 -1 N GLU G 14 O VAL G 31 SHEET 4 H 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19 CISPEP 1 PHE A 60 PRO A 61 0 1.09 CISPEP 2 GLY A 94 PRO A 95 0 0.59 CISPEP 3 GLY B 13 PRO B 14 0 -1.03 CISPEP 4 PHE C 60 PRO C 61 0 -0.91 CISPEP 5 GLY C 94 PRO C 95 0 2.80 CISPEP 6 GLY D 13 PRO D 14 0 3.59 CISPEP 7 PHE E 60 PRO E 61 0 -1.86 CISPEP 8 GLY E 94 PRO E 95 0 1.21 CISPEP 9 GLY F 13 PRO F 14 0 0.17 CISPEP 10 PHE G 60 PRO G 61 0 -1.39 CISPEP 11 GLY G 94 PRO G 95 0 0.64 CISPEP 12 GLY H 13 PRO H 14 0 0.27 CRYST1 129.811 129.811 158.527 90.00 90.00 120.00 P 65 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007704 0.004448 0.000000 0.00000 SCALE2 0.000000 0.008895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006308 0.00000