PDB Short entry for 1UJ2 HEADER TRANSFERASE 25-JUL-03 1UJ2 TITLE CRYSTAL STRUCTURE OF HUMAN URIDINE-CYTIDINE KINASE 2 COMPLEXED WITH TITLE 2 PRODUCTS, CMP AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE-CYTIDINE KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-250; COMPND 5 SYNONYM: URIDINE-CYTIDINE KINASE; COMPND 6 EC: 2.7.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS ALPHA/BETA MONONUCLEOTIDE-BINDING HOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.N.SUZUKI,K.KOIZUMI,M.FUKUSHIMA,A.MATSUDA,F.INAGAKI REVDAT 4 25-OCT-23 1UJ2 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1UJ2 1 VERSN REVDAT 2 18-MAY-04 1UJ2 1 JRNL REMARK REVDAT 1 04-MAY-04 1UJ2 0 JRNL AUTH N.N.SUZUKI,K.KOIZUMI,M.FUKUSHIMA,A.MATSUDA,F.INAGAKI JRNL TITL STRUCTURAL BASIS FOR THE SPECIFICITY, CATALYSIS, AND JRNL TITL 2 REGULATION OF HUMAN URIDINE-CYTIDINE KINASE JRNL REF STRUCTURE V. 12 751 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15130468 JRNL DOI 10.1016/J.STR.2004.02.038 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.N.SUZUKI,K.KOIZUMI,M.FUKUSHIMA,A.MATSUDA,F.INAGAKI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF HUMAN REMARK 1 TITL 2 URIDINE-CYTIDINE KINASE 2 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1477 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12876357 REMARK 1 DOI 10.1107/S0907444903011533 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 406606.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 54460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5537 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7174 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 780 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 444 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.290 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 51.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CMPADP3.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CMPADP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000005878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1UDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CALSIUM ACETATE, TRIS, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.51100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.85700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.51100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.85700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X, Y, 2-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -12.02462 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 129.13135 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 ASN A 11 REMARK 465 HIS A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 232 REMARK 465 PRO A 233 REMARK 465 SER A 234 REMARK 465 LYS A 235 REMARK 465 ARG A 236 REMARK 465 GLN A 237 REMARK 465 THR A 238 REMARK 465 ASN A 239 REMARK 465 GLY A 240 REMARK 465 CYS A 241 REMARK 465 LEU A 242 REMARK 465 ASN A 243 REMARK 465 GLY A 244 REMARK 465 TYR A 245 REMARK 465 THR A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 ARG A 249 REMARK 465 LYS A 250 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 THR B 8 REMARK 465 LEU B 9 REMARK 465 GLN B 10 REMARK 465 ASN B 11 REMARK 465 HIS B 12 REMARK 465 GLN B 13 REMARK 465 GLN B 14 REMARK 465 PRO B 15 REMARK 465 ASN B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 GLY B 232 REMARK 465 PRO B 233 REMARK 465 SER B 234 REMARK 465 LYS B 235 REMARK 465 ARG B 236 REMARK 465 GLN B 237 REMARK 465 THR B 238 REMARK 465 ASN B 239 REMARK 465 GLY B 240 REMARK 465 CYS B 241 REMARK 465 LEU B 242 REMARK 465 ASN B 243 REMARK 465 GLY B 244 REMARK 465 TYR B 245 REMARK 465 THR B 246 REMARK 465 PRO B 247 REMARK 465 SER B 248 REMARK 465 ARG B 249 REMARK 465 LYS B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 TYR A 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 SER B 70 OG REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 53 NE2 GLN B 53 2657 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 210 -43.84 72.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 34 OG REMARK 620 2 C5P A2301 O1P 158.2 REMARK 620 3 ADP A2302 O2B 68.4 123.2 REMARK 620 4 ADP A2302 O3B 126.5 70.5 59.0 REMARK 620 5 ADP A2302 O2A 75.1 126.2 61.0 72.1 REMARK 620 6 HOH A2318 O 81.1 83.1 80.1 98.0 139.5 REMARK 620 7 HOH A2467 O 94.4 97.8 109.5 94.3 48.6 167.2 REMARK 620 8 HOH A2519 O 82.4 85.1 150.7 148.8 110.4 98.1 69.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 34 OG REMARK 620 2 C5P B1301 O1P 166.1 REMARK 620 3 ADP B1302 O2B 68.2 121.1 REMARK 620 4 ADP B1302 O3B 124.4 67.4 57.1 REMARK 620 5 HOH B1388 O 86.5 83.3 90.3 102.3 REMARK 620 6 HOH B1469 O 78.8 93.4 145.1 149.2 98.9 REMARK 620 7 HOH B1502 O 91.8 96.7 97.7 86.3 170.6 71.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 2301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 2302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UDW RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CTP. REMARK 900 RELATED ID: 1UEJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CYD. REMARK 900 RELATED ID: 1UEI RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH UTP. REMARK 900 RELATED ID: 1UFQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN, LIGAND-FREE. DBREF 1UJ2 A 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 DBREF 1UJ2 B 1 250 UNP Q9BZX2 UCK2_HUMAN 1 250 SEQADV 1UJ2 PRO A -1 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UJ2 GLY A 0 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UJ2 PRO B -1 UNP Q9BZX2 CLONING ARTIFACT SEQADV 1UJ2 GLY B 0 UNP Q9BZX2 CLONING ARTIFACT SEQRES 1 A 252 PRO GLY MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN SEQRES 2 A 252 HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY SEQRES 3 A 252 VAL SER GLY GLY THR ALA SER GLY LYS SER SER VAL CYS SEQRES 4 A 252 ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP SEQRES 5 A 252 TYR ARG GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER SEQRES 6 A 252 PHE TYR ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA SEQRES 7 A 252 LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE SEQRES 8 A 252 ASP ASN GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR SEQRES 9 A 252 GLU GLY LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SEQRES 10 A 252 SER HIS SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO SEQRES 11 A 252 ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SEQRES 12 A 252 SER GLN GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE SEQRES 13 A 252 VAL ASP THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL SEQRES 14 A 252 LEU ARG ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN SEQRES 15 A 252 ILE LEU SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE SEQRES 16 A 252 GLU GLU PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL SEQRES 17 A 252 ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN SEQRES 18 A 252 LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY SEQRES 19 A 252 PRO SER LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR SEQRES 20 A 252 THR PRO SER ARG LYS SEQRES 1 B 252 PRO GLY MET ALA GLY ASP SER GLU GLN THR LEU GLN ASN SEQRES 2 B 252 HIS GLN GLN PRO ASN GLY GLY GLU PRO PHE LEU ILE GLY SEQRES 3 B 252 VAL SER GLY GLY THR ALA SER GLY LYS SER SER VAL CYS SEQRES 4 B 252 ALA LYS ILE VAL GLN LEU LEU GLY GLN ASN GLU VAL ASP SEQRES 5 B 252 TYR ARG GLN LYS GLN VAL VAL ILE LEU SER GLN ASP SER SEQRES 6 B 252 PHE TYR ARG VAL LEU THR SER GLU GLN LYS ALA LYS ALA SEQRES 7 B 252 LEU LYS GLY GLN PHE ASN PHE ASP HIS PRO ASP ALA PHE SEQRES 8 B 252 ASP ASN GLU LEU ILE LEU LYS THR LEU LYS GLU ILE THR SEQRES 9 B 252 GLU GLY LYS THR VAL GLN ILE PRO VAL TYR ASP PHE VAL SEQRES 10 B 252 SER HIS SER ARG LYS GLU GLU THR VAL THR VAL TYR PRO SEQRES 11 B 252 ALA ASP VAL VAL LEU PHE GLU GLY ILE LEU ALA PHE TYR SEQRES 12 B 252 SER GLN GLU VAL ARG ASP LEU PHE GLN MET LYS LEU PHE SEQRES 13 B 252 VAL ASP THR ASP ALA ASP THR ARG LEU SER ARG ARG VAL SEQRES 14 B 252 LEU ARG ASP ILE SER GLU ARG GLY ARG ASP LEU GLU GLN SEQRES 15 B 252 ILE LEU SER GLN TYR ILE THR PHE VAL LYS PRO ALA PHE SEQRES 16 B 252 GLU GLU PHE CYS LEU PRO THR LYS LYS TYR ALA ASP VAL SEQRES 17 B 252 ILE ILE PRO ARG GLY ALA ASP ASN LEU VAL ALA ILE ASN SEQRES 18 B 252 LEU ILE VAL GLN HIS ILE GLN ASP ILE LEU ASN GLY GLY SEQRES 19 B 252 PRO SER LYS ARG GLN THR ASN GLY CYS LEU ASN GLY TYR SEQRES 20 B 252 THR PRO SER ARG LYS HET MG A2303 1 HET C5P A2301 21 HET ADP A2302 27 HET MG B1303 1 HET C5P B1301 21 HET ADP B1302 27 HETNAM MG MAGNESIUM ION HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 C5P 2(C9 H14 N3 O8 P) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 HOH *444(H2 O) HELIX 1 1 GLY A 32 LEU A 44 1 13 HELIX 2 2 GLY A 45 VAL A 49 5 5 HELIX 3 3 ASP A 50 LYS A 54 5 5 HELIX 4 4 ASP A 62 TYR A 65 5 4 HELIX 5 5 THR A 69 LYS A 78 1 10 HELIX 6 6 HIS A 85 PHE A 89 5 5 HELIX 7 7 ASP A 90 GLU A 103 1 14 HELIX 8 8 SER A 142 PHE A 149 1 8 HELIX 9 9 ASP A 158 ARG A 174 1 17 HELIX 10 10 ASP A 177 PHE A 188 1 12 HELIX 11 11 PHE A 188 CYS A 197 1 10 HELIX 12 12 LEU A 198 ALA A 204 5 7 HELIX 13 13 GLY A 211 ASP A 213 5 3 HELIX 14 14 ASN A 214 GLY A 231 1 18 HELIX 15 15 GLY B 32 LEU B 44 1 13 HELIX 16 16 GLY B 45 VAL B 49 5 5 HELIX 17 17 ASP B 50 LYS B 54 5 5 HELIX 18 18 ASP B 62 TYR B 65 5 4 HELIX 19 19 THR B 69 LYS B 78 1 10 HELIX 20 20 HIS B 85 PHE B 89 5 5 HELIX 21 21 ASP B 90 GLU B 103 1 14 HELIX 22 22 SER B 142 ASP B 147 1 6 HELIX 23 23 ASP B 158 ARG B 174 1 17 HELIX 24 24 ASP B 177 PHE B 188 1 12 HELIX 25 25 PHE B 188 PHE B 196 1 9 HELIX 26 26 CYS B 197 ALA B 204 5 8 HELIX 27 27 ASN B 214 GLY B 231 1 18 SHEET 1 A 5 VAL A 56 SER A 60 0 SHEET 2 A 5 VAL A 131 GLU A 135 1 O LEU A 133 N LEU A 59 SHEET 3 A 5 PHE A 21 SER A 26 1 N ILE A 23 O VAL A 132 SHEET 4 A 5 MET A 151 ASP A 156 1 O VAL A 155 N SER A 26 SHEET 5 A 5 VAL A 206 PRO A 209 1 O ILE A 208 N PHE A 154 SHEET 1 B 2 VAL A 107 ASP A 113 0 SHEET 2 B 2 SER A 118 VAL A 126 -1 O VAL A 126 N VAL A 107 SHEET 1 C 5 VAL B 56 SER B 60 0 SHEET 2 C 5 VAL B 131 GLU B 135 1 O LEU B 133 N LEU B 59 SHEET 3 C 5 PHE B 21 SER B 26 1 N ILE B 23 O VAL B 132 SHEET 4 C 5 MET B 151 ASP B 156 1 O VAL B 155 N SER B 26 SHEET 5 C 5 VAL B 206 PRO B 209 1 O ILE B 208 N PHE B 154 SHEET 1 D 2 VAL B 107 ASP B 113 0 SHEET 2 D 2 SER B 118 VAL B 126 -1 O VAL B 126 N VAL B 107 LINK OG SER A 34 MG MG A2303 1555 1555 2.39 LINK O1P C5P A2301 MG MG A2303 1555 1555 2.31 LINK O2B ADP A2302 MG MG A2303 1555 1555 2.33 LINK O3B ADP A2302 MG MG A2303 1555 1555 2.78 LINK O2A ADP A2302 MG MG A2303 1555 1555 3.06 LINK MG MG A2303 O HOH A2318 1555 1555 2.38 LINK MG MG A2303 O HOH A2467 1555 1555 2.13 LINK MG MG A2303 O HOH A2519 1555 1555 2.53 LINK OG SER B 34 MG MG B1303 1555 1555 2.47 LINK O1P C5P B1301 MG MG B1303 1555 1555 2.20 LINK O2B ADP B1302 MG MG B1303 1555 1555 2.32 LINK O3B ADP B1302 MG MG B1303 1555 1555 2.88 LINK MG MG B1303 O HOH B1388 1555 1555 2.22 LINK MG MG B1303 O HOH B1469 1555 1555 2.49 LINK MG MG B1303 O HOH B1502 1555 1555 2.08 SITE 1 AC1 6 SER A 34 C5P A2301 ADP A2302 HOH A2318 SITE 2 AC1 6 HOH A2467 HOH A2519 SITE 1 AC2 6 SER B 34 C5P B1301 ADP B1302 HOH B1388 SITE 2 AC2 6 HOH B1469 HOH B1502 SITE 1 AC3 21 THR A 29 ALA A 30 LYS A 33 ASP A 62 SITE 2 AC3 21 TYR A 65 PHE A 83 ASP A 84 TYR A 112 SITE 3 AC3 21 PHE A 114 HIS A 117 ILE A 137 ARG A 166 SITE 4 AC3 21 ARG A 169 ARG A 174 ARG A 176 GLN A 184 SITE 5 AC3 21 ADP A2302 MG A2303 HOH A2310 HOH A2318 SITE 6 AC3 21 HOH A2331 SITE 1 AC4 17 GLY A 28 ALA A 30 SER A 31 GLY A 32 SITE 2 AC4 17 LYS A 33 SER A 34 SER A 35 ARG A 165 SITE 3 AC4 17 ARG A 169 ASP A 213 C5P A2301 MG A2303 SITE 4 AC4 17 HOH A2318 HOH A2327 HOH A2452 HOH A2467 SITE 5 AC4 17 HOH A2525 SITE 1 AC5 21 THR B 29 ALA B 30 LYS B 33 ASP B 62 SITE 2 AC5 21 TYR B 65 PHE B 83 ASP B 84 TYR B 112 SITE 3 AC5 21 HIS B 117 ILE B 137 ARG B 166 ARG B 169 SITE 4 AC5 21 ARG B 174 ARG B 176 GLN B 184 VAL B 189 SITE 5 AC5 21 ADP B1302 MG B1303 HOH B1308 HOH B1314 SITE 6 AC5 21 HOH B1388 SITE 1 AC6 17 ALA B 30 SER B 31 GLY B 32 LYS B 33 SITE 2 AC6 17 SER B 34 SER B 35 ARG B 165 ARG B 169 SITE 3 AC6 17 ASP B 213 C5P B1301 MG B1303 HOH B1317 SITE 4 AC6 17 HOH B1402 HOH B1427 HOH B1464 HOH B1486 SITE 5 AC6 17 HOH B1502 CRYST1 89.022 109.714 64.845 90.00 95.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011233 0.000000 0.001045 0.00000 SCALE2 0.000000 0.009115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015488 0.00000