PDB Short entry for 1UJU HEADER SIGNALING PROTEIN 11-AUG-03 1UJU TITLE SOLUTION STRUCTURE OF THE FOURTH PDZ DOMAIN OF HUMAN SCRIBBLE TITLE 2 (KIAA0147 PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCRIBBLE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: KIAA0147 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HA01022S1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P021030-58; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, CELLULAR SIGNALING, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1UJU 1 REMARK SEQADV REVDAT 2 24-FEB-09 1UJU 1 VERSN REVDAT 1 11-FEB-04 1UJU 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FOURTH PDZ DOMAIN OF HUMAN JRNL TITL 2 SCRIBBLE (KIAA0147 PROTEIN) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UJU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000005906. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PDZ DOMAIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 200204025, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.816, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 10 33.06 -97.77 REMARK 500 1 ALA A 18 168.27 -45.06 REMARK 500 1 ARG A 32 -44.76 -130.17 REMARK 500 1 HIS A 34 129.23 -35.67 REMARK 500 1 THR A 42 33.64 -87.43 REMARK 500 1 SER A 91 30.00 -90.64 REMARK 500 1 ASP A 102 101.84 -46.26 REMARK 500 1 SER A 106 40.51 -100.56 REMARK 500 2 PRO A 19 1.23 -69.80 REMARK 500 2 HIS A 34 -34.56 -37.83 REMARK 500 2 PRO A 38 2.19 -69.72 REMARK 500 2 THR A 42 44.57 -82.39 REMARK 500 2 GLU A 44 41.58 -81.31 REMARK 500 2 ASP A 60 -72.29 -50.17 REMARK 500 2 ASP A 102 95.15 -54.31 REMARK 500 2 PHE A 104 117.49 -171.51 REMARK 500 3 ALA A 18 168.34 -46.51 REMARK 500 3 PRO A 19 1.61 -69.74 REMARK 500 3 ARG A 32 -31.18 -130.72 REMARK 500 3 HIS A 34 43.24 -81.26 REMARK 500 3 ALA A 35 30.18 36.37 REMARK 500 3 ASN A 37 114.84 -172.58 REMARK 500 3 PRO A 41 1.85 -69.69 REMARK 500 3 VAL A 65 106.97 -49.79 REMARK 500 3 SER A 91 33.52 -91.41 REMARK 500 3 LEU A 99 34.17 -99.51 REMARK 500 4 SER A 3 101.29 -46.90 REMARK 500 4 LEU A 10 38.99 -84.79 REMARK 500 4 ALA A 18 168.05 -47.89 REMARK 500 4 PRO A 19 2.37 -69.81 REMARK 500 4 ALA A 35 120.80 -35.71 REMARK 500 4 THR A 42 49.49 -101.17 REMARK 500 4 VAL A 100 178.37 -49.38 REMARK 500 4 PHE A 104 113.39 -164.39 REMARK 500 5 SER A 6 56.17 -97.18 REMARK 500 5 ALA A 35 125.68 -35.97 REMARK 500 5 ARG A 39 -70.20 -34.21 REMARK 500 5 THR A 42 41.73 -89.04 REMARK 500 5 GLU A 44 71.36 -101.30 REMARK 500 5 VAL A 65 104.48 -56.63 REMARK 500 5 SER A 91 33.10 -96.24 REMARK 500 5 ASP A 102 104.61 -43.83 REMARK 500 5 GLU A 105 -39.02 -39.05 REMARK 500 6 SER A 2 88.69 -61.10 REMARK 500 6 SER A 6 -73.36 -105.27 REMARK 500 6 PRO A 19 2.41 -69.77 REMARK 500 6 ARG A 39 -72.39 -34.25 REMARK 500 6 LYS A 50 139.70 -175.79 REMARK 500 6 ARG A 64 146.61 -175.23 REMARK 500 6 VAL A 65 105.49 -57.89 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002200144.1 RELATED DB: TARGETDB DBREF 1UJU A 8 105 UNP Q14160 LAP4_HUMAN 1096 1193 SEQADV 1UJU GLY A 1 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 2 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 3 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU GLY A 4 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 5 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 6 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU GLY A 7 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 106 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU GLY A 107 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU PRO A 108 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 109 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU SER A 110 UNP Q14160 CLONING ARTIFACT SEQADV 1UJU GLY A 111 UNP Q14160 CLONING ARTIFACT SEQRES 1 A 111 GLY SER SER GLY SER SER GLY PRO GLY LEU ARG GLU LEU SEQRES 2 A 111 CYS ILE GLN LYS ALA PRO GLY GLU ARG LEU GLY ILE SER SEQRES 3 A 111 ILE ARG GLY GLY ALA ARG GLY HIS ALA GLY ASN PRO ARG SEQRES 4 A 111 ASP PRO THR ASP GLU GLY ILE PHE ILE SER LYS VAL SER SEQRES 5 A 111 PRO THR GLY ALA ALA GLY ARG ASP GLY ARG LEU ARG VAL SEQRES 6 A 111 GLY LEU ARG LEU LEU GLU VAL ASN GLN GLN SER LEU LEU SEQRES 7 A 111 GLY LEU THR HIS GLY GLU ALA VAL GLN LEU LEU ARG SER SEQRES 8 A 111 VAL GLY ASP THR LEU THR VAL LEU VAL CYS ASP GLY PHE SEQRES 9 A 111 GLU SER GLY PRO SER SER GLY HELIX 1 1 GLY A 55 GLY A 61 1 7 HELIX 2 2 THR A 81 ARG A 90 1 10 SHEET 1 A 2 LEU A 13 GLN A 16 0 SHEET 2 A 2 THR A 95 VAL A 98 -1 O VAL A 98 N LEU A 13 SHEET 1 B 2 ILE A 25 ARG A 28 0 SHEET 2 B 2 PHE A 47 VAL A 51 -1 O LYS A 50 N SER A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000