PDB Short entry for 1UP0 HEADER HYDROLASE 26-SEP-03 1UP0 TITLE STRUCTURE OF THE ENDOGLUCANASE CEL6 FROM MYCOBACTERIUM TUBERCULOSIS IN TITLE 2 COMPLEX WITH CELLOBIOSE AT 1.75 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CELLULASE CEL6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 88-380; COMPND 5 SYNONYM: ENDOGLUCANASE, CELA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 9 OTHER_DETAILS: SYNTHETIC GENE KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, FAMILY 6 EXPDTA X-RAY DIFFRACTION AUTHOR A.VARROT,S.LEYDIER,G.PELL,H.J.GILBERT,G.J.DAVIES REVDAT 4 29-JUL-20 1UP0 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1UP0 1 VERSN REVDAT 2 25-MAY-05 1UP0 1 JRNL REVDAT 1 18-NOV-04 1UP0 0 JRNL AUTH A.VARROT,S.LEYDIER,G.PELL,J.M.MACDONALD,R.V.STICK, JRNL AUTH 2 B.HENRISSAT,H.J.GILBERT,G.J.DAVIES JRNL TITL MYCOBACTERIUM TUBERCULOSIS STRAINS POSSESS FUNCTIONAL JRNL TITL 2 CELLULASES. JRNL REF J.BIOL.CHEM. V. 280 20181 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15824123 JRNL DOI 10.1074/JBC.C500142200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1378 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.860 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2274 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1963 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3127 ; 1.507 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4552 ; 0.874 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 468 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 509 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2295 ; 0.262 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1145 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.074 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1482 ; 0.846 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2354 ; 1.482 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 792 ; 2.490 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 767 ; 3.986 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1290013219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: COMPLEX WITH SDP5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 4K, 100 MM NA ACETATE PH 4.6, REMARK 280 200 MM LISO4. THE PROTEIN WAS AT 10MG/ML AND INCUBATED WITH 1 MM REMARK 280 OF FLUORESCEINYL DERIVED 1-BETA-METHYL-CELLOTRIOSIDE-THIO- REMARK 280 GLUCOSIDE FOR 1 HOUR PRIOR CRYSTALLISATION. 30% PEG400 WAS ADDED REMARK 280 AS CRYOPROTECTANT, PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.80250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.54750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.80250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.54750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2121 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2122 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2192 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 87 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 236 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 126 -136.75 -122.27 REMARK 500 ASP A 131 -156.11 -143.95 REMARK 500 TYR A 162 57.90 -142.09 REMARK 500 SER A 171 -149.35 -92.16 REMARK 500 GLU A 204 71.20 58.67 REMARK 500 ASP A 206 -12.19 78.68 REMARK 500 TRP A 250 -107.25 -110.07 REMARK 500 ASN A 277 -165.91 -115.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2089 DISTANCE = 6.19 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PG A 1386 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UOZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENDOGLUCANASE CEL6 FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 IN COMPLEX WITH THIOCELLOPENTAOSE AT 1.1 ANGSTROM REMARK 900 RELATED ID: 1UP2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENDOGLUCANASE CEL6 FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 IN COMPLEX WITH GLUCOSE-ISOFAGOMINE AT 1.9 ANGSTROM REMARK 900 RELATED ID: 1UP3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENDOGLUCANASE CEL6 FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 IN COMPLEX WITH METHYL-CELLOBIOSYL-4-DEOXY-4-THIO-BETA-D- REMARK 900 CELLOBIOSIDE AT 1.6 ANGSTROM REMARK 999 REMARK 999 SEQUENCE REMARK 999 ONLY THE CATALYTIC DOMAIN HAS BEEN CLONED REMARK 999 CORRESPONDING TO RESIDUES 88 TO 380. DBREF 1UP0 A 87 87 PDB 1UP0 1UP0 87 87 DBREF 1UP0 A 88 380 UNP O53607 O53607 88 380 SEQRES 1 A 294 MET ALA ASN PRO LEU ALA GLY LYS PRO PHE TYR VAL ASP SEQRES 2 A 294 PRO ALA SER ALA ALA MHO VAL ALA ALA ARG ASN ALA ASN SEQRES 3 A 294 PRO PRO ASN ALA GLU LEU THR SER VAL ALA ASN THR PRO SEQRES 4 A 294 GLN SER TYR TRP LEU ASP GLN ALA PHE PRO PRO ALA THR SEQRES 5 A 294 VAL GLY GLY THR VAL ALA ARG TYR THR GLY ALA ALA GLN SEQRES 6 A 294 ALA ALA GLY ALA MET PRO VAL LEU THR LEU TYR GLY ILE SEQRES 7 A 294 PRO HIS ARG ASP CYS GLY SER TYR ALA SER GLY GLY PHE SEQRES 8 A 294 ALA THR GLY THR ASP TYR ARG GLY TRP ILE ASP ALA VAL SEQRES 9 A 294 ALA SER GLY LEU GLY SER SER PRO ALA THR ILE ILE VAL SEQRES 10 A 294 GLU PRO ASP ALA LEU ALA MET ALA ASP CYS LEU SER PRO SEQRES 11 A 294 ASP GLN ARG GLN GLU ARG PHE ASP LEU VAL ARG TYR ALA SEQRES 12 A 294 VAL ASP THR LEU THR ARG ASP PRO ALA ALA ALA VAL TYR SEQRES 13 A 294 VAL ASP ALA GLY HIS SER ARG TRP LEU SER ALA GLU ALA SEQRES 14 A 294 MET ALA ALA ARG LEU ASN ASP VAL GLY VAL GLY ARG ALA SEQRES 15 A 294 ARG GLY PHE SER LEU ASN VAL SER ASN PHE TYR THR THR SEQRES 16 A 294 ASP GLU GLU ILE GLY TYR GLY GLU ALA ILE SER GLY LEU SEQRES 17 A 294 THR ASN GLY SER HIS TYR VAL ILE ASP THR SER ARG ASN SEQRES 18 A 294 GLY ALA GLY PRO ALA PRO ASP ALA PRO LEU ASN TRP CYS SEQRES 19 A 294 ASN PRO SER GLY ARG ALA LEU GLY ALA PRO PRO THR THR SEQRES 20 A 294 ALA THR ALA GLY ALA HIS ALA ASP ALA TYR LEU TRP ILE SEQRES 21 A 294 LYS ARG PRO GLY GLU SER ASP GLY THR CYS GLY ARG GLY SEQRES 22 A 294 GLU PRO GLN ALA GLY ARG PHE VAL SER GLN TYR ALA ILE SEQRES 23 A 294 ASP LEU ALA HIS ASN ALA GLY GLN MODRES 1UP0 MHO A 105 MET S-OXYMETHIONINE HET MHO A 105 9 HET BGC B 1 12 HET BGC B 2 11 HET SO4 A1384 5 HET ACT A1385 4 HET 1PG A1386 8 HETNAM MHO S-OXYMETHIONINE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL FORMUL 1 MHO C5 H11 N O3 S FORMUL 2 BGC 2(C6 H12 O6) FORMUL 3 SO4 O4 S 2- FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 1PG C11 H24 O6 FORMUL 6 HOH *317(H2 O) HELIX 1 1 VAL A 106 ALA A 111 1 6 HELIX 2 2 ASN A 115 ASN A 123 1 9 HELIX 3 3 PRO A 135 ALA A 153 1 19 HELIX 4 4 ASP A 168 SER A 171 5 4 HELIX 5 5 THR A 179 GLY A 195 1 17 HELIX 6 6 MET A 210 LEU A 214 5 5 HELIX 7 7 SER A 215 THR A 234 1 20 HELIX 8 8 SER A 252 VAL A 263 1 12 HELIX 9 9 GLY A 264 ALA A 268 5 5 HELIX 10 10 THR A 280 LEU A 294 1 15 HELIX 11 11 VAL A 367 ALA A 378 1 12 SHEET 1 AA 7 TYR A 128 LEU A 130 0 SHEET 2 AA 7 VAL A 158 LEU A 161 1 O VAL A 158 N TYR A 128 SHEET 3 AA 7 ALA A 199 VAL A 203 1 O THR A 200 N LEU A 159 SHEET 4 AA 7 ALA A 239 ASP A 244 1 O ALA A 240 N ILE A 201 SHEET 5 AA 7 GLY A 270 LEU A 273 1 O GLY A 270 N VAL A 243 SHEET 6 AA 7 HIS A 299 ASP A 303 1 O HIS A 299 N PHE A 271 SHEET 7 AA 7 ALA A 340 LEU A 344 1 N ASP A 341 O TYR A 300 SSBOND 1 CYS A 169 CYS A 213 1555 1555 2.01 SSBOND 2 CYS A 320 CYS A 356 1555 1555 1.99 LINK C ALA A 104 N MHO A 105 1555 1555 1.33 LINK C MHO A 105 N VAL A 106 1555 1555 1.32 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.44 CISPEP 1 ASN A 112 PRO A 113 0 3.66 CRYST1 61.605 93.095 46.667 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021428 0.00000