PDB Short entry for 1UUO HEADER OXIDOREDUCTASE 08-JAN-04 1UUO TITLE RAT DIHYDROOROTATE DEHYDROGENASE (DHOD)IN COMPLEX WITH BREQUINAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOCHONDRIAL PRECURSOR, DIHYDROOROTATE OXIDASE, DHODEHASE; COMPND 5 EC: 1.3.99.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS RATTUS; SOURCE 3 ORGANISM_COMMON: BLACK RAT, ROOF RAT; SOURCE 4 ORGANISM_TAXID: 10117; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIHYDROOROTATE DEHYDROGENASE, BREQUINAR, ATOVAQUONE, NUCLEOTIDE KEYWDS 2 METABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HANSEN,J.LE NOURS,E.JOHANSSON,T.ANTAL,A.ULLRICH,M.LOFFLER,S.LARSEN REVDAT 4 30-JAN-19 1UUO 1 REMARK REVDAT 3 17-JAN-18 1UUO 1 REMARK REVDAT 2 24-FEB-09 1UUO 1 VERSN REVDAT 1 01-APR-04 1UUO 0 JRNL AUTH M.HANSEN,J.LE NOURS,E.JOHANSSON,T.ANTAL,A.ULLRICH,M.LOFFLER, JRNL AUTH 2 S.LARSEN JRNL TITL INHIBITOR BINDING IN A CLASS 2 DIHYDROOROTATE DEHYDROGENASE JRNL TITL 2 CAUSES VARIATIONS IN THE MEMBRANE-ASSOCIATED N-TERMINAL JRNL TITL 3 DOMAIN JRNL REF PROTEIN SCI. V. 13 1031 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15044733 JRNL DOI 10.1110/PS.03533004 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 204139.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 12671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1302 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1630 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 169 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : 2.29000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.700 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 32.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : FMN_BRE_ORO_PAR.TXT REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : FMN_BRE_ORO_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1290014320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12989 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION HANGING DROP WITH REMARK 280 MOTHER LIQUOR: 65% MPD, 0.1M TRIS/HCL, PH=8.5 PROTEIN SOLUTION: REMARK 280 15 MG/ML PROTEIN, 2 MM OROTATE, 15 MG/ML PROTEIN, 2 MM OROTATE, REMARK 280 0.1 % BETA-OCTYLGLUCOSIDE, 0.1 MM ATOVAQUONE, PH 8.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.23450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.23450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.87650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.90050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.87650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.90050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.23450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.87650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.90050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.23450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.87650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.90050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 ARG A 70 REMARK 465 ALA A 71 REMARK 465 THR A 72 REMARK 465 PHE A 73 REMARK 465 ASN A 217 REMARK 465 THR A 218 REMARK 465 ALA A 219 REMARK 465 GLY A 220 REMARK 465 LEU A 221 REMARK 465 ARG A 222 REMARK 465 SER A 223 REMARK 465 LEU A 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 182 O HOH A 2018 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 120 C - N - CA ANGL. DEV. = 19.6 DEGREES REMARK 500 SER A 120 N - CA - C ANGL. DEV. = -28.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 68 -87.91 -99.94 REMARK 500 ASP A 99 77.05 -107.36 REMARK 500 SER A 120 102.09 148.91 REMARK 500 ARG A 146 48.21 -142.01 REMARK 500 VAL A 213 23.95 -160.86 REMARK 500 ASP A 259 79.76 -103.39 REMARK 500 TYR A 356 -63.08 -152.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1400 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 206 O REMARK 620 2 ARG A 248 O 116.0 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BRF A1397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A1399 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UUM RELATED DB: PDB REMARK 900 RAT DIHYDROOROTATE DEHYDROGENASE (DHOD)IN COMPLEX WITH ATOVAQUONE REMARK 999 REMARK 999 SEQUENCE REMARK 999 29 FIRST RESIDUES IN N-TERMINAL DELETED AND HIS-TAQ ADDED DBREF 1UUO A 25 30 PDB 1UUO 1UUO 25 30 DBREF 1UUO A 31 396 UNP Q63707 PYRD_RAT 30 395 SEQRES 1 A 372 HIS HIS HIS HIS HIS HIS ALA THR GLY ASP ASP HIS PHE SEQRES 2 A 372 TYR ALA GLU TYR LEU MET PRO GLY LEU GLN ARG LEU LEU SEQRES 3 A 372 ASP PRO GLU SER ALA HIS ARG LEU ALA VAL ARG VAL THR SEQRES 4 A 372 SER LEU GLY LEU LEU PRO ARG ALA THR PHE GLN ASP SER SEQRES 5 A 372 ASP MET LEU GLU VAL LYS VAL LEU GLY HIS LYS PHE ARG SEQRES 6 A 372 ASN PRO VAL GLY ILE ALA ALA GLY PHE ASP LYS ASN GLY SEQRES 7 A 372 GLU ALA VAL ASP GLY LEU TYR LYS LEU GLY PHE GLY PHE SEQRES 8 A 372 VAL GLU VAL GLY SER VAL THR PRO GLN PRO GLN GLU GLY SEQRES 9 A 372 ASN PRO ARG PRO ARG VAL PHE ARG LEU PRO GLU ASP GLN SEQRES 10 A 372 ALA VAL ILE ASN ARG TYR GLY PHE ASN SER HIS GLY LEU SEQRES 11 A 372 SER VAL VAL GLU HIS ARG LEU ARG ALA ARG GLN GLN LYS SEQRES 12 A 372 GLN ALA GLN LEU THR ALA ASP GLY LEU PRO LEU GLY ILE SEQRES 13 A 372 ASN LEU GLY LYS ASN LYS THR SER GLU ASP ALA ALA ALA SEQRES 14 A 372 ASP TYR ALA GLU GLY VAL ARG THR LEU GLY PRO LEU ALA SEQRES 15 A 372 ASP TYR LEU VAL VAL ASN VAL SER SER PRO ASN THR ALA SEQRES 16 A 372 GLY LEU ARG SER LEU GLN GLY LYS THR GLU LEU ARG HIS SEQRES 17 A 372 LEU LEU SER LYS VAL LEU GLN GLU ARG ASP ALA LEU LYS SEQRES 18 A 372 GLY THR ARG LYS PRO ALA VAL LEU VAL LYS ILE ALA PRO SEQRES 19 A 372 ASP LEU THR ALA GLN ASP LYS GLU ASP ILE ALA SER VAL SEQRES 20 A 372 ALA ARG GLU LEU GLY ILE ASP GLY LEU ILE VAL THR ASN SEQRES 21 A 372 THR THR VAL SER ARG PRO VAL GLY LEU GLN GLY ALA LEU SEQRES 22 A 372 ARG SER GLU THR GLY GLY LEU SER GLY LYS PRO LEU ARG SEQRES 23 A 372 ASP LEU SER THR GLN THR ILE ARG GLU MET TYR ALA LEU SEQRES 24 A 372 THR GLN GLY ARG ILE PRO ILE ILE GLY VAL GLY GLY VAL SEQRES 25 A 372 SER SER GLY GLN ASP ALA LEU GLU LYS ILE GLN ALA GLY SEQRES 26 A 372 ALA SER LEU VAL GLN LEU TYR THR ALA LEU ILE PHE LEU SEQRES 27 A 372 GLY PRO PRO VAL VAL VAL ARG VAL LYS ARG GLU LEU GLU SEQRES 28 A 372 ALA LEU LEU LYS GLU ARG GLY PHE THR THR VAL THR ASP SEQRES 29 A 372 ALA ILE GLY ALA ASP HIS ARG ARG HET BRF A1397 28 HET FMN A1398 31 HET ORO A1399 11 HET NI A1400 1 HET NA A1401 1 HETNAM BRF 6-FLUORO-2-(2'-FLUORO-1,1'-BIPHENYL-4-YL)-3- HETNAM 2 BRF METHYLQUINOLINE-4-CARBOXYLIC ACID HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 BRF C23 H15 F2 N O2 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 NI NI 2+ FORMUL 6 NA NA 1+ FORMUL 7 HOH *41(H2 O) HELIX 1 1 ASP A 34 TYR A 41 1 8 HELIX 2 2 TYR A 41 LEU A 50 1 10 HELIX 3 3 ASP A 51 LEU A 65 1 15 HELIX 4 4 ALA A 104 LEU A 111 1 8 HELIX 5 5 PRO A 138 ASP A 140 5 3 HELIX 6 6 GLY A 153 ARG A 164 1 12 HELIX 7 7 ARG A 164 ASP A 174 1 11 HELIX 8 8 ASP A 190 GLY A 203 1 14 HELIX 9 9 PRO A 204 ALA A 206 5 3 HELIX 10 10 GLY A 226 ALA A 243 1 18 HELIX 11 11 THR A 261 GLY A 276 1 16 HELIX 12 12 LEU A 309 THR A 324 1 16 HELIX 13 13 SER A 338 GLY A 349 1 12 HELIX 14 14 TYR A 356 GLY A 363 1 8 HELIX 15 15 PRO A 364 ARG A 381 1 18 HELIX 16 16 THR A 385 ILE A 390 1 6 SHEET 1 AA 2 VAL A 81 VAL A 83 0 SHEET 2 AA 2 HIS A 86 PHE A 88 -1 O HIS A 86 N VAL A 83 SHEET 1 AB 9 VAL A 92 ILE A 94 0 SHEET 2 AB 9 LEU A 352 LEU A 355 1 O VAL A 353 N GLY A 93 SHEET 3 AB 9 ILE A 330 VAL A 333 1 O GLY A 332 N GLN A 354 SHEET 4 AB 9 GLY A 279 VAL A 282 1 O LEU A 280 N ILE A 331 SHEET 5 AB 9 ALA A 251 LYS A 255 1 O VAL A 254 N ILE A 281 SHEET 6 AB 9 TYR A 208 ASN A 212 1 O LEU A 209 N LEU A 253 SHEET 7 AB 9 LEU A 178 LEU A 182 1 O ILE A 180 N VAL A 210 SHEET 8 AB 9 PHE A 115 VAL A 121 1 O VAL A 116 N GLY A 179 SHEET 9 AB 9 VAL A 92 ILE A 94 1 O ILE A 94 N GLU A 117 SHEET 1 AC 3 VAL A 134 LEU A 137 0 SHEET 2 AC 3 ALA A 142 ASN A 145 -1 O ALA A 142 N LEU A 137 SHEET 3 AC 3 GLY A 303 GLY A 306 -1 O GLY A 303 N ASN A 145 LINK NI NI A1400 O ALA A 206 1555 1555 2.74 LINK NI NI A1400 O ARG A 248 1555 1555 2.69 CISPEP 1 ARG A 131 PRO A 132 0 -0.60 CISPEP 2 VAL A 282 THR A 283 0 3.02 SITE 1 AC1 5 GLY A 203 PRO A 204 ALA A 206 THR A 247 SITE 2 AC1 5 ARG A 248 SITE 1 AC2 12 LEU A 42 MET A 43 GLN A 47 PRO A 52 SITE 2 AC2 12 ALA A 55 HIS A 56 ALA A 59 VAL A 134 SITE 3 AC2 12 ARG A 136 TYR A 356 ILE A 360 PRO A 364 SITE 1 AC3 24 ALA A 95 ALA A 96 GLY A 97 LYS A 100 SITE 2 AC3 24 GLY A 119 SER A 120 ASN A 145 ASN A 181 SITE 3 AC3 24 ASN A 212 LYS A 255 THR A 283 ASN A 284 SITE 4 AC3 24 SER A 305 GLY A 306 VAL A 333 GLY A 334 SITE 5 AC3 24 GLY A 335 LEU A 355 TYR A 356 THR A 357 SITE 6 AC3 24 ORO A1399 HOH A2025 HOH A2034 HOH A2041 SITE 1 AC4 10 LYS A 100 ASN A 145 TYR A 147 GLY A 148 SITE 2 AC4 10 PHE A 149 ASN A 212 SER A 215 ASN A 284 SITE 3 AC4 10 THR A 285 FMN A1398 CRYST1 49.753 95.801 144.469 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006922 0.00000