PDB Short entry for 1UWY HEADER HYDROLASE 17-FEB-04 1UWY TITLE CRYSTAL STRUCTURE OF HUMAN CARBOXYPEPTIDASE M COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE M; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.17.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS METALLOPEPTIDASE, CARBOXYPEPTIDASE, GPI-ANCHOR, METALLOPROTEASE, KEYWDS 2 ZINC, LIPOPROTEIN, HYDROLASE, STRUCTURAL PROTEOMICS IN EUROPE, KEYWDS 3 SPINE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR K.MASKOS,D.REVERTER,W.BODE REVDAT 5 13-DEC-23 1UWY 1 REMARK HETSYN REVDAT 4 29-JUL-20 1UWY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1UWY 1 VERSN REVDAT 2 28-MAY-04 1UWY 1 REMARK REVDAT 1 08-APR-04 1UWY 0 JRNL AUTH D.REVERTER,K.MASKOS,F.TAN,R.SKIDGEL,W.BODE JRNL TITL CRYSTAL STRUCTURE OF HUMAN CARBOXYPEPTIDASE M, A JRNL TITL 2 MEMBRANE-BOUND ENZYME THAT REGULATES PEPTIDE HORMONE JRNL TITL 3 ACTIVITY JRNL REF J.MOL.BIOL. V. 338 257 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15066430 JRNL DOI 10.1016/J.JMB.2004.02.058 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 18185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1413 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1580 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.780 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS ENTRY HAS SOME RESIDUES MODELED REMARK 3 WITH AN OCCUPANCY OF 0.00 REMARK 4 REMARK 4 1UWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1290014571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.51333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.51333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 382 REMARK 465 LEU A 383 REMARK 465 ASP A 384 REMARK 465 SER A 385 REMARK 465 ILE A 386 REMARK 465 PRO A 387 REMARK 465 VAL A 388 REMARK 465 SER A 389 REMARK 465 ASN A 390 REMARK 465 ASP A 404 REMARK 465 HIS A 405 REMARK 465 SER A 406 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 465 THR A 409 REMARK 465 LYS A 410 REMARK 465 PRO A 411 REMARK 465 SER A 412 REMARK 465 LEU A 413 REMARK 465 PHE A 414 REMARK 465 LEU A 415 REMARK 465 PHE A 416 REMARK 465 LEU A 417 REMARK 465 VAL A 418 REMARK 465 SER A 419 REMARK 465 LEU A 420 REMARK 465 LEU A 421 REMARK 465 HIS A 422 REMARK 465 ILE A 423 REMARK 465 PHE A 424 REMARK 465 PHE A 425 REMARK 465 LYS A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 403 CA C O CB CG CD REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 9 CG CD OE1 OE2 REMARK 480 LYS A 33 CG CD CE NZ REMARK 480 LYS A 36 CG CD CE NZ REMARK 480 LYS A 50 CD CE NZ REMARK 480 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 480 ASN A 98 CG OD1 REMARK 480 LYS A 118 CG CD CE NZ REMARK 480 LYS A 159 CG CD CE NZ REMARK 480 GLN A 188 CG CD OE1 NE2 REMARK 480 ARG A 196 CZ NH1 NH2 REMARK 480 ASP A 223 CG OD1 OD2 REMARK 480 GLU A 224 CG CD OE1 OE2 REMARK 480 LYS A 226 CE NZ REMARK 480 ASN A 227 CG OD1 ND2 REMARK 480 GLN A 249 CB CG CD OE1 NE2 REMARK 480 GLN A 305 CG CD OE1 NE2 REMARK 480 GLN A 318 CG CD OE1 NE2 REMARK 480 ASN A 346 OD1 ND2 REMARK 480 LYS A 364 CB CG CD CE NZ REMARK 480 ASN A 367 CG OD1 ND2 REMARK 480 LYS A 372 CD CE NZ REMARK 480 PRO A 391 CG CD REMARK 480 ARG A 400 CG CD NE CZ NH1 NH2 REMARK 480 ASN A 401 CG OD1 ND2 REMARK 480 LEU A 402 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 9 O HOH A 2002 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 118 CE2 TYR A 133 5555 1.65 REMARK 500 NZ LYS A 118 CD2 TYR A 133 5555 1.94 REMARK 500 NZ LYS A 118 CZ TYR A 133 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 391 CG PRO A 391 CD -0.226 REMARK 500 PRO A 391 CD PRO A 391 N 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 325 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO A 362 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 3 50.73 -101.10 REMARK 500 ARG A 7 -175.23 -57.76 REMARK 500 GLU A 9 -75.47 -49.15 REMARK 500 ALA A 13 -73.05 -41.01 REMARK 500 LEU A 15 -71.04 -47.04 REMARK 500 ASN A 21 -18.02 -48.37 REMARK 500 SER A 23 -26.61 -39.60 REMARK 500 VAL A 25 23.71 -145.45 REMARK 500 SER A 34 -172.93 -63.17 REMARK 500 PHE A 48 78.09 -116.38 REMARK 500 LYS A 50 -22.43 89.09 REMARK 500 PRO A 91 -71.09 -61.06 REMARK 500 ASN A 98 -79.92 -68.32 REMARK 500 SER A 99 -7.49 -44.06 REMARK 500 PRO A 119 150.64 -47.86 REMARK 500 ARG A 127 -72.27 108.99 REMARK 500 ALA A 142 5.41 -66.12 REMARK 500 GLU A 144 113.42 -160.69 REMARK 500 TYR A 145 115.93 -21.64 REMARK 500 ASN A 147 106.57 -43.15 REMARK 500 SER A 149 99.93 -67.41 REMARK 500 ALA A 170 116.09 170.03 REMARK 500 ASP A 201 55.04 -112.85 REMARK 500 GLU A 224 -45.18 -133.21 REMARK 500 LYS A 226 -86.00 -64.66 REMARK 500 ASN A 227 5.37 -59.81 REMARK 500 ASN A 233 -0.18 75.09 REMARK 500 TYR A 242 108.51 -175.36 REMARK 500 ASN A 252 -37.42 -37.62 REMARK 500 LYS A 284 -78.78 -27.84 REMARK 500 ASN A 312 13.35 45.01 REMARK 500 ARG A 320 50.94 -118.02 REMARK 500 PRO A 350 127.91 -33.15 REMARK 500 THR A 357 112.93 -160.56 REMARK 500 PRO A 362 -133.12 -7.31 REMARK 500 GLU A 363 32.64 171.82 REMARK 500 LYS A 364 116.47 143.23 REMARK 500 PHE A 368 61.00 -108.99 REMARK 500 ALA A 370 -172.90 -67.69 REMARK 500 PRO A 378 30.58 -82.43 REMARK 500 PHE A 379 -155.54 -158.64 REMARK 500 SER A 392 -99.86 17.06 REMARK 500 PRO A 397 81.94 -37.31 REMARK 500 ARG A 400 -75.59 -43.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 133 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG B 2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 GLU A 69 OE1 70.8 REMARK 620 3 GLU A 69 OE2 97.0 59.7 REMARK 620 4 HIS A 173 ND1 90.7 130.2 78.3 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 1UWY A 1 426 UNP P14384 CBPM_HUMAN 18 443 SEQRES 1 A 426 LEU ASP PHE ASN TYR HIS ARG GLN GLU GLY MET GLU ALA SEQRES 2 A 426 PHE LEU LYS THR VAL ALA GLN ASN TYR SER SER VAL THR SEQRES 3 A 426 HIS LEU HIS SER ILE GLY LYS SER VAL LYS GLY ARG ASN SEQRES 4 A 426 LEU TRP VAL LEU VAL VAL GLY ARG PHE PRO LYS GLU HIS SEQRES 5 A 426 ARG ILE GLY ILE PRO GLU PHE LYS TYR VAL ALA ASN MET SEQRES 6 A 426 HIS GLY ASP GLU THR VAL GLY ARG GLU LEU LEU LEU HIS SEQRES 7 A 426 LEU ILE ASP TYR LEU VAL THR SER ASP GLY LYS ASP PRO SEQRES 8 A 426 GLU ILE THR ASN LEU ILE ASN SER THR ARG ILE HIS ILE SEQRES 9 A 426 MET PRO SER MET ASN PRO ASP GLY PHE GLU ALA VAL LYS SEQRES 10 A 426 LYS PRO ASP CYS TYR TYR SER ILE GLY ARG GLU ASN TYR SEQRES 11 A 426 ASN GLN TYR ASP LEU ASN ARG ASN PHE PRO ASP ALA PHE SEQRES 12 A 426 GLU TYR ASN ASN VAL SER ARG GLN PRO GLU THR VAL ALA SEQRES 13 A 426 VAL MET LYS TRP LEU LYS THR GLU THR PHE VAL LEU SER SEQRES 14 A 426 ALA ASN LEU HIS GLY GLY ALA LEU VAL ALA SER TYR PRO SEQRES 15 A 426 PHE ASP ASN GLY VAL GLN ALA THR GLY ALA LEU TYR SER SEQRES 16 A 426 ARG SER LEU THR PRO ASP ASP ASP VAL PHE GLN TYR LEU SEQRES 17 A 426 ALA HIS THR TYR ALA SER ARG ASN PRO ASN MET LYS LYS SEQRES 18 A 426 GLY ASP GLU CYS LYS ASN LYS MET ASN PHE PRO ASN GLY SEQRES 19 A 426 VAL THR ASN GLY TYR SER TRP TYR PRO LEU GLN GLY GLY SEQRES 20 A 426 MET GLN ASP TYR ASN TYR ILE TRP ALA GLN CYS PHE GLU SEQRES 21 A 426 ILE THR LEU GLU LEU SER CYS CYS LYS TYR PRO ARG GLU SEQRES 22 A 426 GLU LYS LEU PRO SER PHE TRP ASN ASN ASN LYS ALA SER SEQRES 23 A 426 LEU ILE GLU TYR ILE LYS GLN VAL HIS LEU GLY VAL LYS SEQRES 24 A 426 GLY GLN VAL PHE ASP GLN ASN GLY ASN PRO LEU PRO ASN SEQRES 25 A 426 VAL ILE VAL GLU VAL GLN ASP ARG LYS HIS ILE CYS PRO SEQRES 26 A 426 TYR ARG THR ASN LYS TYR GLY GLU TYR TYR LEU LEU LEU SEQRES 27 A 426 LEU PRO GLY SER TYR ILE ILE ASN VAL THR VAL PRO GLY SEQRES 28 A 426 HIS ASP PRO HIS ILE THR LYS VAL ILE ILE PRO GLU LYS SEQRES 29 A 426 SER GLN ASN PHE SER ALA LEU LYS LYS ASP ILE LEU LEU SEQRES 30 A 426 PRO PHE GLN GLY GLN LEU ASP SER ILE PRO VAL SER ASN SEQRES 31 A 426 PRO SER CYS PRO MET ILE PRO LEU TYR ARG ASN LEU PRO SEQRES 32 A 426 ASP HIS SER ALA ALA THR LYS PRO SER LEU PHE LEU PHE SEQRES 33 A 426 LEU VAL SER LEU LEU HIS ILE PHE PHE LYS MODRES 1UWY ASN A 98 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET ZN A1405 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *25(H2 O) HELIX 1 1 ARG A 7 TYR A 22 1 16 HELIX 2 2 THR A 70 ASP A 87 1 18 HELIX 3 3 ASP A 90 THR A 100 1 11 HELIX 4 4 ASN A 109 VAL A 116 1 8 HELIX 5 5 GLN A 151 GLU A 164 1 14 HELIX 6 6 VAL A 187 GLY A 191 5 5 HELIX 7 7 GLY A 191 SER A 195 5 5 HELIX 8 8 ASP A 201 ARG A 215 1 15 HELIX 9 9 GLY A 247 TRP A 255 1 9 HELIX 10 10 ARG A 272 GLU A 274 5 3 HELIX 11 11 LYS A 275 ASN A 282 1 8 HELIX 12 12 ASN A 283 LYS A 292 1 10 HELIX 13 13 GLN A 293 LEU A 296 5 4 SHEET 1 AA 5 THR A 26 LYS A 33 0 SHEET 2 AA 5 ASN A 39 VAL A 45 -1 O LEU A 40 N ILE A 31 SHEET 3 AA 5 ARG A 101 MET A 105 -1 O ILE A 102 N VAL A 45 SHEET 4 AA 5 GLU A 58 ALA A 63 1 O PHE A 59 N HIS A 103 SHEET 5 AA 5 PHE A 166 LEU A 168 1 N VAL A 167 O GLU A 58 SHEET 1 AB 8 THR A 26 LYS A 33 0 SHEET 2 AB 8 ASN A 39 VAL A 45 -1 O LEU A 40 N ILE A 31 SHEET 3 AB 8 ARG A 101 MET A 105 -1 O ILE A 102 N VAL A 45 SHEET 4 AB 8 GLU A 58 ALA A 63 1 O PHE A 59 N HIS A 103 SHEET 5 AB 8 ASN A 171 HIS A 173 1 N LEU A 172 O VAL A 62 SHEET 6 AB 8 THR A 262 SER A 266 1 O LEU A 263 N HIS A 173 SHEET 7 AB 8 ALA A 176 TYR A 181 -1 O ALA A 176 N SER A 266 SHEET 8 AB 8 VAL A 235 ASN A 237 1 O THR A 236 N TYR A 181 SHEET 1 AC 3 GLU A 333 LEU A 336 0 SHEET 2 AC 3 VAL A 298 PHE A 303 -1 O VAL A 298 N LEU A 336 SHEET 3 AC 3 LEU A 371 LYS A 372 1 O LEU A 371 N LYS A 299 SHEET 1 AD 3 GLU A 333 LEU A 336 0 SHEET 2 AD 3 VAL A 298 PHE A 303 -1 O VAL A 298 N LEU A 336 SHEET 3 AD 3 ILE A 375 LEU A 376 1 O ILE A 375 N PHE A 303 SHEET 1 AE 3 ILE A 314 VAL A 317 0 SHEET 2 AE 3 GLY A 341 THR A 348 -1 O ASN A 346 N GLU A 316 SHEET 3 AE 3 HIS A 355 ILE A 361 -1 O HIS A 355 N VAL A 347 SSBOND 1 CYS A 121 CYS A 268 1555 1555 2.04 SSBOND 2 CYS A 225 CYS A 267 1555 1555 2.02 SSBOND 3 CYS A 324 CYS A 393 1555 1555 2.03 LINK ND2 ASN A 98 C1 NAG B 1 1555 1555 1.46 LINK OD1 ASP A 223 O6 NAG B 2 4655 1555 1.94 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK ND1 HIS A 66 ZN ZN A1405 1555 1555 2.24 LINK OE1 GLU A 69 ZN ZN A1405 1555 1555 2.26 LINK OE2 GLU A 69 ZN ZN A1405 1555 1555 2.12 LINK ND1 HIS A 173 ZN ZN A1405 1555 1555 2.13 CISPEP 1 PRO A 182 PHE A 183 0 0.19 CRYST1 85.830 85.830 124.540 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011651 0.006727 0.000000 0.00000 SCALE2 0.000000 0.013453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008029 0.00000