PDB Short entry for 1V1I HEADER ADENOVIRUS 16-APR-04 1V1I TITLE ADENOVIRUS FIBRE SHAFT SEQUENCE N-TERMINALLY FUSED TO THE TITLE 2 BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF WITH A LONG TITLE 3 LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRITIN, FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: SHAFT DOMAIN PLUS FOLDON DOMAIN, RESIDUES 319-392 AND 457- COMPND 5 483; COMPND 6 SYNONYM: ARTIFICAL FUSION OF ADENOVIRUS FIBRE SHAFT WITH COMPND 7 BACTERIOPHAGE T4 FIBRITIN FOLDON, WHISKER ANTIGEN CONTROL PROTEIN, COMPND 8 COLLAR PROTEIN; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ARTIFICIAL FUSION PROTEIN OF ADENOVIRUS TYPE 2 FIBRE COMPND 11 SHAFT RESIDUES 319-398 - BACTERIOPHAGE T4 FIBRITIN FOLDON RESIDUES COMPND 12 457-483 WITH A GLY-SER LINKER IN BETWEEN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS C, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 129951, 10665; SOURCE 4 ATCC: VR-846 AND 11303-B4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7.7 KEYWDS ADENOVIRUS, CHIMERA, FIBER PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.PAPANIKOLOPOULOU,S.TEIXEIRA,H.BELRHALI,V.T.FORSYTH,A.MITRAKI, AUTHOR 2 M.J.VAN RAAIJ REVDAT 6 13-DEC-23 1V1I 1 REMARK REVDAT 5 07-FEB-18 1V1I 1 AUTHOR JRNL REVDAT 4 15-MAR-17 1V1I 1 SOURCE REVDAT 3 24-FEB-09 1V1I 1 VERSN REVDAT 2 16-AUG-04 1V1I 1 JRNL REMARK REVDAT 1 30-JUL-04 1V1I 0 JRNL AUTH K.PAPANIKOLOPOULOU,S.TEIXEIRA,H.BELRHALI,V.T.FORSYTH, JRNL AUTH 2 A.MITRAKI,M.J.VAN RAAIJ JRNL TITL ADENOVIRUS FIBRE SHAFT SEQUENCES FOLD INTO THE NATIVE TRIPLE JRNL TITL 2 BETA-SPIRAL FOLD WHEN N-TERMINALLY FUSED TO THE JRNL TITL 3 BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF JRNL REF J.MOL.BIOL. V. 342 219 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15313619 JRNL DOI 10.1016/J.JMB.2004.07.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.PAPANIKOLOPOULOU,V.FORGE,P.GOELTZ,A.MITRAKI REMARK 1 TITL FORMATION OF HIGHLY STABLE CHIMERIC TRIMERS BY FUSION OF AN REMARK 1 TITL 2 ADENOVIRUS FIBER SHAFT FRAGMENT WITH THE FOLDON DOMAIN OF REMARK 1 TITL 3 BACTERIOPHAGE T4 FIBRITIN REMARK 1 REF J.BIOL.CHEM. V. 279 8991 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 14699113 REMARK 1 DOI 10.1074/JBC.M311791200 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.VAN RAAIJ,A.MITRAKI,G.LAVIGNE,S.CUSACK REMARK 1 TITL A TRIPLE BETA-SPIRAL IN THE ADENOVIRUS FIBRE SHAFT REVEALS A REMARK 1 TITL 2 NEW STRUCTURAL MOTIF FOR A FIBROUS PROTEIN REMARK 1 REF NATURE V. 401 935 1999 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 10553913 REMARK 1 DOI 10.1038/44880 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.STRELKOV,Y.TAO,M.M.SHNEIDER,V.MESYANZHINOV,M.G.ROSSMANN REMARK 1 TITL STRUCTURE OF BACTERIOPHAGE T4 FIBRITIN M: A TROUBLESOME REMARK 1 TITL 2 PACKING ARRANGEMENT REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 805 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 9757094 REMARK 1 DOI 10.1107/S0907444997018878 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS OF RESOLUTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.542 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-04. REMARK 100 THE DEPOSITION ID IS D_1290014995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QIU, PDB ENTRY 1AVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM HEPES-NAOH PH 7.0 0.2 M REMARK 280 MAGNESIUM ACETATE, 20 % (W/V) PEG 3350, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.45500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.45500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ADENOVIRUS FIBRE IS RESPONSIBLE FOR ADENOVIRUS RECEPTOR REMARK 400 BINDING AND CONTAINS A VIRUS-BINDING N-TERMINAL DOMAIN, A REMARK 400 MIDDLE SHAFT DOMAIN AND A C-TERMINAL RECEPTOR-BINDING REMARK 400 DOMAIN, BINDING TO THE HUMAN COXSACKIEVIRUS AND ADENOVIRUS REMARK 400 PROTEIN. REMARK 400 THE FIBRITIN CHAPERONE IS RESPONSIBLE FOR ATTACHMENT OF LONG REMARK 400 TAIL FIBRES TO VIRUS PARTICLE. DURING PHAGE ASSEMBLY, 6 REMARK 400 FIBRITIN MOLECULES ATTACH TO EACH VIRION NECK THROUGH THEIR REMARK 400 N-TERMINAL DOMAINS, TO FORM A COLLAR WITH SIX FIBERS REMARK 400 ('WHISKERS'). REMARK 400 MOLECULES ATTACH TO EACH VIRION NECK THROUGH THEIR N-TERMINAL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 ASP A 396 REMARK 465 ASP A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 401 REMARK 465 SER A 402 REMARK 465 ASN B 393 REMARK 465 LYS B 394 REMARK 465 ASN B 395 REMARK 465 ASP B 396 REMARK 465 ASP B 397 REMARK 465 LYS B 398 REMARK 465 GLY B 401 REMARK 465 SER B 402 REMARK 465 GLY B 457 REMARK 465 GLY C 392 REMARK 465 ASN C 393 REMARK 465 LYS C 394 REMARK 465 ASN C 395 REMARK 465 ASP C 396 REMARK 465 ASP C 397 REMARK 465 LYS C 398 REMARK 465 GLY C 401 REMARK 465 SER C 402 REMARK 465 GLY C 457 REMARK 465 TYR C 458 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 469 CG1 VAL C 470 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 332 -23.00 92.32 REMARK 500 SER A 363 123.61 -36.77 REMARK 500 LEU A 479 -31.96 -38.31 REMARK 500 THR B 332 -11.07 72.84 REMARK 500 ARG B 464 47.06 -105.22 REMARK 500 ASP B 473 55.43 35.82 REMARK 500 ASN C 331 -106.91 57.79 REMARK 500 ASP C 465 22.93 -143.40 REMARK 500 LEU C 478 136.86 -36.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2028 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2043 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH C2017 DISTANCE = 5.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AA0 RELATED DB: PDB REMARK 900 FIBRITIN DELETION MUTANT E (BACTERIOPHAGE T4) REMARK 900 RELATED ID: 1AVY RELATED DB: PDB REMARK 900 FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4) REMARK 900 RELATED ID: 1OX3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MINI-FIBRITIN REMARK 900 RELATED ID: 1RFO RELATED DB: PDB REMARK 900 TRIMERIC FOLDON OF THE T4 PHAGEHEAD FIBRITIN REMARK 900 RELATED ID: 1QIU RELATED DB: PDB REMARK 900 A TRIPLE BETA-SPIRAL IN THE ADENOVIRUS FIBRE SHAFT REVEALS A NEW REMARK 900 STRUCTURAL MOTIF FOR BIOLOGICAL FIBRES REMARK 900 RELATED ID: 1V1H RELATED DB: PDB REMARK 900 ADENOVIRUS FIBRE SHAFT SEQUENCE N-TERMINALLY FUSED TO THE REMARK 900 BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF WITH A SHORT REMARK 900 LINKER DBREF 1V1I A 319 398 UNP P03275 FIBP_ADE02 319 398 DBREF 1V1I A 457 483 UNP P10104 WAC_BPT4 457 483 DBREF 1V1I B 319 398 UNP P03275 FIBP_ADE02 319 398 DBREF 1V1I B 457 483 UNP P10104 WAC_BPT4 457 483 DBREF 1V1I C 319 398 UNP P03275 FIBP_ADE02 319 398 DBREF 1V1I C 457 483 UNP P10104 WAC_BPT4 457 483 SEQADV 1V1I GLY A 401 UNP P10104 LINKER SEQADV 1V1I SER A 402 UNP P10104 LINKER SEQADV 1V1I LEU A 478 UNP P10104 PHE 478 CONFLICT SEQADV 1V1I GLY B 401 UNP P10104 LINKER SEQADV 1V1I SER B 402 UNP P10104 LINKER SEQADV 1V1I LEU B 478 UNP P10104 PHE 478 CONFLICT SEQADV 1V1I GLY C 401 UNP P10104 LINKER SEQADV 1V1I SER C 402 UNP P10104 LINKER SEQADV 1V1I LEU C 478 UNP P10104 PHE 478 CONFLICT SEQRES 1 A 109 VAL SER ILE LYS LYS SER SER GLY LEU ASN PHE ASP ASN SEQRES 2 A 109 THR ALA ILE ALA ILE ASN ALA GLY LYS GLY LEU GLU PHE SEQRES 3 A 109 ASP THR ASN THR SER GLU SER PRO ASP ILE ASN PRO ILE SEQRES 4 A 109 LYS THR LYS ILE GLY SER GLY ILE ASP TYR ASN GLU ASN SEQRES 5 A 109 GLY ALA MET ILE THR LYS LEU GLY ALA GLY LEU SER PHE SEQRES 6 A 109 ASP ASN SER GLY ALA ILE THR ILE GLY ASN LYS ASN ASP SEQRES 7 A 109 ASP LYS GLY SER GLY TYR ILE PRO GLU ALA PRO ARG ASP SEQRES 8 A 109 GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU SEQRES 9 A 109 LEU SER THR PHE LEU SEQRES 1 B 109 VAL SER ILE LYS LYS SER SER GLY LEU ASN PHE ASP ASN SEQRES 2 B 109 THR ALA ILE ALA ILE ASN ALA GLY LYS GLY LEU GLU PHE SEQRES 3 B 109 ASP THR ASN THR SER GLU SER PRO ASP ILE ASN PRO ILE SEQRES 4 B 109 LYS THR LYS ILE GLY SER GLY ILE ASP TYR ASN GLU ASN SEQRES 5 B 109 GLY ALA MET ILE THR LYS LEU GLY ALA GLY LEU SER PHE SEQRES 6 B 109 ASP ASN SER GLY ALA ILE THR ILE GLY ASN LYS ASN ASP SEQRES 7 B 109 ASP LYS GLY SER GLY TYR ILE PRO GLU ALA PRO ARG ASP SEQRES 8 B 109 GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU SEQRES 9 B 109 LEU SER THR PHE LEU SEQRES 1 C 109 VAL SER ILE LYS LYS SER SER GLY LEU ASN PHE ASP ASN SEQRES 2 C 109 THR ALA ILE ALA ILE ASN ALA GLY LYS GLY LEU GLU PHE SEQRES 3 C 109 ASP THR ASN THR SER GLU SER PRO ASP ILE ASN PRO ILE SEQRES 4 C 109 LYS THR LYS ILE GLY SER GLY ILE ASP TYR ASN GLU ASN SEQRES 5 C 109 GLY ALA MET ILE THR LYS LEU GLY ALA GLY LEU SER PHE SEQRES 6 C 109 ASP ASN SER GLY ALA ILE THR ILE GLY ASN LYS ASN ASP SEQRES 7 C 109 ASP LYS GLY SER GLY TYR ILE PRO GLU ALA PRO ARG ASP SEQRES 8 C 109 GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU SEQRES 9 C 109 LEU SER THR PHE LEU FORMUL 4 HOH *237(H2 O) HELIX 1 1 LYS A 322 SER A 325 5 4 HELIX 2 2 SER A 480 LEU A 483 5 4 HELIX 3 3 LYS B 322 SER B 325 5 4 HELIX 4 4 SER B 480 PHE B 482 5 3 HELIX 5 5 LYS C 322 SER C 325 5 4 SHEET 1 AA 2 LEU A 327 ASP A 330 0 SHEET 2 AA 2 ALA A 333 ILE A 336 -1 O ALA A 333 N ASP A 330 SHEET 1 AB 2 LEU A 342 PHE A 344 0 SHEET 2 AB 2 ILE A 357 THR A 359 -1 O LYS A 358 N GLU A 343 SHEET 1 AC 2 ILE A 365 TYR A 367 0 SHEET 2 AC 2 MET A 373 THR A 375 -1 O ILE A 374 N ASP A 366 SHEET 1 AD 2 LEU A 381 PHE A 383 0 SHEET 2 AD 2 ILE A 389 ILE A 391 -1 O THR A 390 N SER A 382 SHEET 1 AE 4 GLU A 475 LEU A 478 0 SHEET 2 AE 4 ALA A 468 LYS A 472 -1 O VAL A 470 N VAL A 477 SHEET 3 AE 4 TYR B 469 LYS B 472 -1 O ARG B 471 N TYR A 469 SHEET 4 AE 4 GLU B 475 LEU B 478 -1 O GLU B 475 N LYS B 472 SHEET 1 BA 2 LEU B 327 ASP B 330 0 SHEET 2 BA 2 ALA B 333 ILE B 336 -1 O ALA B 333 N ASP B 330 SHEET 1 BB 2 LEU B 342 PHE B 344 0 SHEET 2 BB 2 ILE B 357 THR B 359 -1 O LYS B 358 N GLU B 343 SHEET 1 BC 2 ILE B 365 TYR B 367 0 SHEET 2 BC 2 MET B 373 THR B 375 -1 O ILE B 374 N ASP B 366 SHEET 1 BD 2 LEU B 381 PHE B 383 0 SHEET 2 BD 2 ILE B 389 ILE B 391 -1 O THR B 390 N SER B 382 SHEET 1 CA 2 LEU C 327 ASP C 330 0 SHEET 2 CA 2 ALA C 333 ILE C 336 -1 O ALA C 333 N ASP C 330 SHEET 1 CB 2 LEU C 342 PHE C 344 0 SHEET 2 CB 2 ILE C 357 THR C 359 -1 O LYS C 358 N GLU C 343 SHEET 1 CC 2 ILE C 365 TYR C 367 0 SHEET 2 CC 2 MET C 373 THR C 375 -1 O ILE C 374 N ASP C 366 SHEET 1 CD 2 SER C 382 PHE C 383 0 SHEET 2 CD 2 ILE C 389 THR C 390 -1 O THR C 390 N SER C 382 SHEET 1 CE 2 TYR C 469 LYS C 472 0 SHEET 2 CE 2 GLU C 475 LEU C 478 -1 O GLU C 475 N LYS C 472 CISPEP 1 SER A 351 PRO A 352 0 1.15 CISPEP 2 SER B 351 PRO B 352 0 3.52 CISPEP 3 SER C 351 PRO C 352 0 0.67 CRYST1 71.230 43.270 100.910 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009910 0.00000 MTRIX1 1 -0.120870 -0.774670 0.620710 -0.88325 1 MTRIX2 1 0.709310 -0.504850 -0.491950 20.35965 1 MTRIX3 1 0.694460 0.380820 0.610500 1.57340 1 MTRIX1 2 -0.114640 -0.783120 0.611210 -0.51366 1 MTRIX2 2 0.721420 -0.488610 -0.490730 19.95750 1 MTRIX3 2 0.682940 0.384680 0.620970 1.17076 1 MTRIX1 3 -0.119080 -0.773340 0.622700 -0.91706 1 MTRIX2 3 0.715800 -0.501500 -0.485940 19.92031 1 MTRIX3 3 0.688080 0.387860 0.613270 1.49919 1 MTRIX1 4 -0.469360 -0.702930 0.534400 -2.46250 1 MTRIX2 4 0.869720 -0.263410 0.417390 15.00239 1 MTRIX3 4 -0.152630 0.660690 0.734980 -5.93603 1 MTRIX1 5 -0.501370 -0.679740 0.535330 -2.79445 1 MTRIX2 5 0.856190 -0.300570 0.420240 15.11898 1 MTRIX3 5 -0.124750 0.669040 0.732680 -6.32320 1 MTRIX1 6 -0.437540 -0.727480 0.528520 -1.99557 1 MTRIX2 6 0.884680 -0.243770 0.396990 14.83177 1 MTRIX3 6 -0.159960 0.641360 0.750380 -5.99442 1