PDB Short entry for 1V25 HEADER LIGASE 07-OCT-03 1V25 TITLE CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LONG-CHAIN-FATTY-ACID-COA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.2.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS LIGASE, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR Y.HISANAGA,H.AGO,T.NAKATSU,K.HAMADA,K.IDA,H.KANDA, AUTHOR 2 M.YAMAMOTO,T.HORI,Y.ARII,M.SUGAHARA,S.KURAMITSU,S.YOKOYAMA, AUTHOR 3 M.MIYANO,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 4 (RSGI) REVDAT 2 24-FEB-09 1V25 1 VERSN REVDAT 1 27-JUL-04 1V25 0 JRNL AUTH Y.HISANAGA,H.AGO,N.NAKAGAWA,K.HAMADA,K.IDA, JRNL AUTH 2 M.YAMAMOTO,T.HORI,Y.ARII,M.SUGAHARA,S.KURAMITSU, JRNL AUTH 3 S.YOKOYAMA,M.MIYANO JRNL TITL STRUCTURAL BASIS OF THE SUBSTRATE-SPECIFIC JRNL TITL 2 TWO-STEP CATALYSIS OF LONG CHAIN FATTY ACYL-COA JRNL TITL 3 SYNTHETASE DIMER JRNL REF J.BIOL.CHEM. V. 279 31717 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15145952 JRNL DOI 10.1074/JBC.M400100200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5204 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.381 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.295 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7997 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10874 ; 0.960 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 990 ; 4.422 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1215 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6052 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3668 ; 0.169 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 545 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4950 ; 0.460 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7930 ; 0.894 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3047 ; 1.217 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2944 ; 2.258 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1V25 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB006111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, AMMONIUM SULFATE, PEG-MME, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.24350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.24350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 MET A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 454 REMARK 465 MET A 455 REMARK 465 GLY A 456 REMARK 465 HIS A 457 REMARK 465 PRO A 458 REMARK 465 LYS A 459 REMARK 465 VAL A 460 REMARK 465 LYS A 461 REMARK 465 GLU A 462 REMARK 465 ALA A 463 REMARK 465 VAL A 482 REMARK 465 PRO A 483 REMARK 465 ARG A 484 REMARK 465 GLY A 485 REMARK 465 GLU A 486 REMARK 465 LYS A 487 REMARK 465 PRO A 488 REMARK 465 THR A 489 REMARK 465 PRO A 490 REMARK 465 GLU A 491 REMARK 465 GLU A 492 REMARK 465 LEU A 493 REMARK 465 ASN A 494 REMARK 465 GLU A 495 REMARK 465 HIS A 496 REMARK 465 LEU A 497 REMARK 465 LEU A 498 REMARK 465 LYS A 499 REMARK 465 ALA A 500 REMARK 465 VAL A 512 REMARK 465 PHE A 513 REMARK 465 ALA A 514 REMARK 465 GLU A 515 REMARK 465 GLU A 516 REMARK 465 ILE A 517 REMARK 465 PRO A 518 REMARK 465 ARG A 519 REMARK 465 THR A 520 REMARK 465 SER A 521 REMARK 465 ALA A 522 REMARK 465 GLY A 523 REMARK 465 LYS A 524 REMARK 465 PHE A 525 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 MET B 6 REMARK 465 ASN B 7 REMARK 465 PRO B 458 REMARK 465 LYS B 459 REMARK 465 VAL B 460 REMARK 465 LYS B 461 REMARK 465 GLU B 462 REMARK 465 VAL B 481 REMARK 465 VAL B 482 REMARK 465 PRO B 483 REMARK 465 ARG B 484 REMARK 465 GLY B 485 REMARK 465 GLU B 486 REMARK 465 LYS B 487 REMARK 465 PRO B 488 REMARK 465 THR B 489 REMARK 465 PRO B 490 REMARK 465 GLU B 491 REMARK 465 GLU B 492 REMARK 465 LEU B 493 REMARK 465 ALA B 514 REMARK 465 GLU B 515 REMARK 465 GLU B 516 REMARK 465 ILE B 517 REMARK 465 PRO B 518 REMARK 465 ARG B 519 REMARK 465 THR B 520 REMARK 465 SER B 521 REMARK 465 ALA B 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 432 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 228 2.35 -66.54 REMARK 500 SER A 330 -1.73 86.94 REMARK 500 LYS A 381 -47.59 -131.57 REMARK 500 TRP A 473 -152.37 -74.51 REMARK 500 ARG A 528 4.10 -66.47 REMARK 500 TYR A 534 31.46 -93.61 REMARK 500 PHE B 80 -168.75 -102.16 REMARK 500 MET B 228 1.49 -69.60 REMARK 500 SER B 330 -5.89 89.59 REMARK 500 LYS B 378 51.10 -90.89 REMARK 500 LYS B 472 -73.12 -76.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1120 O REMARK 620 2 GLU A 328 OE2 130.7 REMARK 620 3 THR A 184 OG1 99.0 107.3 REMARK 620 4 ANP A 666 O2A 115.9 103.1 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B1666 O2A REMARK 620 2 GLU B 328 OE2 101.2 REMARK 620 3 THR B 184 OG1 101.0 104.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 666 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 1666 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V26 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE LIGAND AMM REMARK 900 RELATED ID: TTK003000168.2 RELATED DB: TARGETDB DBREF 1V25 A 1 541 UNP Q6L8F0 Q6L8F0_THETH 1 541 DBREF 1V25 B 1 541 UNP Q6L8F0 Q6L8F0_THETH 1 541 SEQRES 1 A 541 MET GLU GLY GLU ARG MET ASN ALA PHE PRO SER THR MET SEQRES 2 A 541 MET ASP GLU GLU LEU ASN LEU TRP ASP PHE LEU GLU ARG SEQRES 3 A 541 ALA ALA ALA LEU PHE GLY ARG LYS GLU VAL VAL SER ARG SEQRES 4 A 541 LEU HIS THR GLY GLU VAL HIS ARG THR THR TYR ALA GLU SEQRES 5 A 541 VAL TYR GLN ARG ALA ARG ARG LEU MET GLY GLY LEU ARG SEQRES 6 A 541 ALA LEU GLY VAL GLY VAL GLY ASP ARG VAL ALA THR LEU SEQRES 7 A 541 GLY PHE ASN HIS PHE ARG HIS LEU GLU ALA TYR PHE ALA SEQRES 8 A 541 VAL PRO GLY MET GLY ALA VAL LEU HIS THR ALA ASN PRO SEQRES 9 A 541 ARG LEU SER PRO LYS GLU ILE ALA TYR ILE LEU ASN HIS SEQRES 10 A 541 ALA GLU ASP LYS VAL LEU LEU PHE ASP PRO ASN LEU LEU SEQRES 11 A 541 PRO LEU VAL GLU ALA ILE ARG GLY GLU LEU LYS THR VAL SEQRES 12 A 541 GLN HIS PHE VAL VAL MET ASP GLU LYS ALA PRO GLU GLY SEQRES 13 A 541 TYR LEU ALA TYR GLU GLU ALA LEU GLY GLU GLU ALA ASP SEQRES 14 A 541 PRO VAL ARG VAL PRO GLU ARG ALA ALA CYS GLY MET ALA SEQRES 15 A 541 TYR THR THR GLY THR THR GLY LEU PRO LYS GLY VAL VAL SEQRES 16 A 541 TYR SER HIS ARG ALA LEU VAL LEU HIS SER LEU ALA ALA SEQRES 17 A 541 SER LEU VAL ASP GLY THR ALA LEU SER GLU LYS ASP VAL SEQRES 18 A 541 VAL LEU PRO VAL VAL PRO MET PHE HIS VAL ASN ALA TRP SEQRES 19 A 541 CYS LEU PRO TYR ALA ALA THR LEU VAL GLY ALA LYS GLN SEQRES 20 A 541 VAL LEU PRO GLY PRO ARG LEU ASP PRO ALA SER LEU VAL SEQRES 21 A 541 GLU LEU PHE ASP GLY GLU GLY VAL THR PHE THR ALA GLY SEQRES 22 A 541 VAL PRO THR VAL TRP LEU ALA LEU ALA ASP TYR LEU GLU SEQRES 23 A 541 SER THR GLY HIS ARG LEU LYS THR LEU ARG ARG LEU VAL SEQRES 24 A 541 VAL GLY GLY SER ALA ALA PRO ARG SER LEU ILE ALA ARG SEQRES 25 A 541 PHE GLU ARG MET GLY VAL GLU VAL ARG GLN GLY TYR GLY SEQRES 26 A 541 LEU THR GLU THR SER PRO VAL VAL VAL GLN ASN PHE VAL SEQRES 27 A 541 LYS SER HIS LEU GLU SER LEU SER GLU GLU GLU LYS LEU SEQRES 28 A 541 THR LEU LYS ALA LYS THR GLY LEU PRO ILE PRO LEU VAL SEQRES 29 A 541 ARG LEU ARG VAL ALA ASP GLU GLU GLY ARG PRO VAL PRO SEQRES 30 A 541 LYS ASP GLY LYS ALA LEU GLY GLU VAL GLN LEU LYS GLY SEQRES 31 A 541 PRO TRP ILE THR GLY GLY TYR TYR GLY ASN GLU GLU ALA SEQRES 32 A 541 THR ARG SER ALA LEU THR PRO ASP GLY PHE PHE ARG THR SEQRES 33 A 541 GLY ASP ILE ALA VAL TRP ASP GLU GLU GLY TYR VAL GLU SEQRES 34 A 541 ILE LYS ASP ARG LEU LYS ASP LEU ILE LYS SER GLY GLY SEQRES 35 A 541 GLU TRP ILE SER SER VAL ASP LEU GLU ASN ALA LEU MET SEQRES 36 A 541 GLY HIS PRO LYS VAL LYS GLU ALA ALA VAL VAL ALA ILE SEQRES 37 A 541 PRO HIS PRO LYS TRP GLN GLU ARG PRO LEU ALA VAL VAL SEQRES 38 A 541 VAL PRO ARG GLY GLU LYS PRO THR PRO GLU GLU LEU ASN SEQRES 39 A 541 GLU HIS LEU LEU LYS ALA GLY PHE ALA LYS TRP GLN LEU SEQRES 40 A 541 PRO ASP ALA TYR VAL PHE ALA GLU GLU ILE PRO ARG THR SEQRES 41 A 541 SER ALA GLY LYS PHE LEU LYS ARG ALA LEU ARG GLU GLN SEQRES 42 A 541 TYR LYS ASN TYR TYR GLY GLY ALA SEQRES 1 B 541 MET GLU GLY GLU ARG MET ASN ALA PHE PRO SER THR MET SEQRES 2 B 541 MET ASP GLU GLU LEU ASN LEU TRP ASP PHE LEU GLU ARG SEQRES 3 B 541 ALA ALA ALA LEU PHE GLY ARG LYS GLU VAL VAL SER ARG SEQRES 4 B 541 LEU HIS THR GLY GLU VAL HIS ARG THR THR TYR ALA GLU SEQRES 5 B 541 VAL TYR GLN ARG ALA ARG ARG LEU MET GLY GLY LEU ARG SEQRES 6 B 541 ALA LEU GLY VAL GLY VAL GLY ASP ARG VAL ALA THR LEU SEQRES 7 B 541 GLY PHE ASN HIS PHE ARG HIS LEU GLU ALA TYR PHE ALA SEQRES 8 B 541 VAL PRO GLY MET GLY ALA VAL LEU HIS THR ALA ASN PRO SEQRES 9 B 541 ARG LEU SER PRO LYS GLU ILE ALA TYR ILE LEU ASN HIS SEQRES 10 B 541 ALA GLU ASP LYS VAL LEU LEU PHE ASP PRO ASN LEU LEU SEQRES 11 B 541 PRO LEU VAL GLU ALA ILE ARG GLY GLU LEU LYS THR VAL SEQRES 12 B 541 GLN HIS PHE VAL VAL MET ASP GLU LYS ALA PRO GLU GLY SEQRES 13 B 541 TYR LEU ALA TYR GLU GLU ALA LEU GLY GLU GLU ALA ASP SEQRES 14 B 541 PRO VAL ARG VAL PRO GLU ARG ALA ALA CYS GLY MET ALA SEQRES 15 B 541 TYR THR THR GLY THR THR GLY LEU PRO LYS GLY VAL VAL SEQRES 16 B 541 TYR SER HIS ARG ALA LEU VAL LEU HIS SER LEU ALA ALA SEQRES 17 B 541 SER LEU VAL ASP GLY THR ALA LEU SER GLU LYS ASP VAL SEQRES 18 B 541 VAL LEU PRO VAL VAL PRO MET PHE HIS VAL ASN ALA TRP SEQRES 19 B 541 CYS LEU PRO TYR ALA ALA THR LEU VAL GLY ALA LYS GLN SEQRES 20 B 541 VAL LEU PRO GLY PRO ARG LEU ASP PRO ALA SER LEU VAL SEQRES 21 B 541 GLU LEU PHE ASP GLY GLU GLY VAL THR PHE THR ALA GLY SEQRES 22 B 541 VAL PRO THR VAL TRP LEU ALA LEU ALA ASP TYR LEU GLU SEQRES 23 B 541 SER THR GLY HIS ARG LEU LYS THR LEU ARG ARG LEU VAL SEQRES 24 B 541 VAL GLY GLY SER ALA ALA PRO ARG SER LEU ILE ALA ARG SEQRES 25 B 541 PHE GLU ARG MET GLY VAL GLU VAL ARG GLN GLY TYR GLY SEQRES 26 B 541 LEU THR GLU THR SER PRO VAL VAL VAL GLN ASN PHE VAL SEQRES 27 B 541 LYS SER HIS LEU GLU SER LEU SER GLU GLU GLU LYS LEU SEQRES 28 B 541 THR LEU LYS ALA LYS THR GLY LEU PRO ILE PRO LEU VAL SEQRES 29 B 541 ARG LEU ARG VAL ALA ASP GLU GLU GLY ARG PRO VAL PRO SEQRES 30 B 541 LYS ASP GLY LYS ALA LEU GLY GLU VAL GLN LEU LYS GLY SEQRES 31 B 541 PRO TRP ILE THR GLY GLY TYR TYR GLY ASN GLU GLU ALA SEQRES 32 B 541 THR ARG SER ALA LEU THR PRO ASP GLY PHE PHE ARG THR SEQRES 33 B 541 GLY ASP ILE ALA VAL TRP ASP GLU GLU GLY TYR VAL GLU SEQRES 34 B 541 ILE LYS ASP ARG LEU LYS ASP LEU ILE LYS SER GLY GLY SEQRES 35 B 541 GLU TRP ILE SER SER VAL ASP LEU GLU ASN ALA LEU MET SEQRES 36 B 541 GLY HIS PRO LYS VAL LYS GLU ALA ALA VAL VAL ALA ILE SEQRES 37 B 541 PRO HIS PRO LYS TRP GLN GLU ARG PRO LEU ALA VAL VAL SEQRES 38 B 541 VAL PRO ARG GLY GLU LYS PRO THR PRO GLU GLU LEU ASN SEQRES 39 B 541 GLU HIS LEU LEU LYS ALA GLY PHE ALA LYS TRP GLN LEU SEQRES 40 B 541 PRO ASP ALA TYR VAL PHE ALA GLU GLU ILE PRO ARG THR SEQRES 41 B 541 SER ALA GLY LYS PHE LEU LYS ARG ALA LEU ARG GLU GLN SEQRES 42 B 541 TYR LYS ASN TYR TYR GLY GLY ALA HET MG A1001 1 HET MG B1002 1 HET ANP A 666 31 HET ANP B1666 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 7 HOH *421(H2 O) HELIX 1 1 LEU A 20 PHE A 31 1 12 HELIX 2 2 TYR A 50 LEU A 67 1 18 HELIX 3 3 HIS A 82 MET A 95 1 14 HELIX 4 4 SER A 107 GLU A 119 1 13 HELIX 5 5 LEU A 129 ARG A 137 1 9 HELIX 6 6 GLY A 138 LEU A 140 5 3 HELIX 7 7 TYR A 160 LEU A 164 1 5 HELIX 8 8 HIS A 198 ALA A 208 1 11 HELIX 9 9 HIS A 230 CYS A 235 1 6 HELIX 10 10 CYS A 235 GLY A 244 1 10 HELIX 11 11 ASP A 255 GLU A 266 1 12 HELIX 12 12 VAL A 274 GLY A 289 1 16 HELIX 13 13 PRO A 306 MET A 316 1 11 HELIX 14 14 THR A 327 SER A 330 5 4 HELIX 15 15 LYS A 339 GLU A 343 5 5 HELIX 16 16 SER A 346 ALA A 355 1 10 HELIX 17 17 ASN A 400 SER A 406 1 7 HELIX 18 18 SER A 447 ASN A 452 1 6 HELIX 19 19 ALA A 529 TYR A 534 1 6 HELIX 20 20 LEU B 20 PHE B 31 1 12 HELIX 21 21 TYR B 50 LEU B 67 1 18 HELIX 22 22 HIS B 82 MET B 95 1 14 HELIX 23 23 SER B 107 ALA B 118 1 12 HELIX 24 24 LEU B 129 ARG B 137 1 9 HELIX 25 25 GLY B 138 LEU B 140 5 3 HELIX 26 26 TYR B 160 LEU B 164 1 5 HELIX 27 27 HIS B 198 SER B 209 1 12 HELIX 28 28 HIS B 230 CYS B 235 1 6 HELIX 29 29 CYS B 235 GLY B 244 1 10 HELIX 30 30 ASP B 255 GLU B 266 1 12 HELIX 31 31 VAL B 274 GLY B 289 1 16 HELIX 32 32 PRO B 306 ARG B 315 1 10 HELIX 33 33 THR B 327 SER B 330 5 4 HELIX 34 34 LYS B 339 GLU B 343 5 5 HELIX 35 35 SER B 346 LYS B 356 1 11 HELIX 36 36 ASN B 400 ALA B 407 1 8 HELIX 37 37 SER B 447 MET B 455 1 9 HELIX 38 38 ASN B 494 ALA B 500 1 7 HELIX 39 39 ALA B 503 LEU B 507 5 5 HELIX 40 40 LEU B 526 TYR B 534 1 9 SHEET 1 A 9 VAL A 45 THR A 49 0 SHEET 2 A 9 GLU A 35 ARG A 39 -1 N SER A 38 O HIS A 46 SHEET 3 A 9 LYS A 246 LEU A 249 1 O LEU A 249 N VAL A 37 SHEET 4 A 9 VAL A 221 PRO A 224 1 N VAL A 222 O LYS A 246 SHEET 5 A 9 PHE A 270 GLY A 273 1 O PHE A 270 N LEU A 223 SHEET 6 A 9 ARG A 297 VAL A 300 1 O VAL A 299 N THR A 271 SHEET 7 A 9 GLU A 319 GLY A 325 1 O GLY A 323 N VAL A 300 SHEET 8 A 9 VAL A 332 GLN A 335 -1 O VAL A 334 N TYR A 324 SHEET 9 A 9 LEU A 359 PRO A 360 -1 O LEU A 359 N GLN A 335 SHEET 1 B 7 LEU A 158 ALA A 159 0 SHEET 2 B 7 HIS A 145 VAL A 148 1 N VAL A 148 O LEU A 158 SHEET 3 B 7 VAL A 122 PHE A 125 1 N LEU A 123 O VAL A 147 SHEET 4 B 7 ARG A 74 LEU A 78 1 N ALA A 76 O LEU A 124 SHEET 5 B 7 VAL A 98 THR A 101 1 O VAL A 98 N VAL A 75 SHEET 6 B 7 ALA A 178 THR A 184 1 O MET A 181 N LEU A 99 SHEET 7 B 7 LYS A 192 SER A 197 -1 O VAL A 194 N ALA A 182 SHEET 1 C 4 ARG A 365 ALA A 369 0 SHEET 2 C 4 GLY A 384 LYS A 389 -1 O GLU A 385 N ALA A 369 SHEET 3 C 4 PHE A 414 TRP A 422 -1 O PHE A 414 N LEU A 388 SHEET 4 C 4 VAL A 428 ARG A 433 -1 O GLU A 429 N VAL A 421 SHEET 1 D 2 LEU A 437 SER A 440 0 SHEET 2 D 2 GLU A 443 SER A 446 -1 O GLU A 443 N SER A 440 SHEET 1 E 2 VAL A 465 PRO A 469 0 SHEET 2 E 2 GLU A 475 ALA A 479 -1 O ARG A 476 N ILE A 468 SHEET 1 F 9 VAL B 45 THR B 49 0 SHEET 2 F 9 GLU B 35 ARG B 39 -1 N SER B 38 O HIS B 46 SHEET 3 F 9 LYS B 246 LEU B 249 1 O LEU B 249 N VAL B 37 SHEET 4 F 9 VAL B 221 PRO B 224 1 N VAL B 222 O LYS B 246 SHEET 5 F 9 PHE B 270 GLY B 273 1 O PHE B 270 N LEU B 223 SHEET 6 F 9 ARG B 297 VAL B 300 1 O VAL B 299 N THR B 271 SHEET 7 F 9 GLU B 319 GLY B 325 1 O GLU B 319 N LEU B 298 SHEET 8 F 9 VAL B 332 GLN B 335 -1 O VAL B 334 N TYR B 324 SHEET 9 F 9 LEU B 359 PRO B 360 -1 O LEU B 359 N GLN B 335 SHEET 1 G 7 LEU B 158 ALA B 159 0 SHEET 2 G 7 HIS B 145 VAL B 148 1 N VAL B 148 O LEU B 158 SHEET 3 G 7 VAL B 122 PHE B 125 1 N LEU B 123 O VAL B 147 SHEET 4 G 7 ARG B 74 LEU B 78 1 N ALA B 76 O LEU B 124 SHEET 5 G 7 VAL B 98 THR B 101 1 O VAL B 98 N VAL B 75 SHEET 6 G 7 ALA B 178 THR B 184 1 O CYS B 179 N LEU B 99 SHEET 7 G 7 LYS B 192 SER B 197 -1 O LYS B 192 N THR B 184 SHEET 1 H 4 ARG B 365 ALA B 369 0 SHEET 2 H 4 GLY B 384 LYS B 389 -1 O GLU B 385 N ALA B 369 SHEET 3 H 4 PHE B 414 TRP B 422 -1 O PHE B 414 N LEU B 388 SHEET 4 H 4 VAL B 428 ARG B 433 -1 O LYS B 431 N ILE B 419 SHEET 1 I 2 LEU B 437 SER B 440 0 SHEET 2 I 2 GLU B 443 SER B 446 -1 O ILE B 445 N ILE B 438 SHEET 1 J 3 ALA B 464 ILE B 468 0 SHEET 2 J 3 ARG B 476 VAL B 480 -1 O VAL B 480 N ALA B 464 SHEET 3 J 3 ALA B 510 TYR B 511 1 O ALA B 510 N ALA B 479 LINK MG MG A1001 O HOH A1120 1555 1555 2.63 LINK MG MG A1001 OE2 GLU A 328 1555 1555 2.66 LINK MG MG A1001 OG1 THR A 184 1555 1555 2.85 LINK MG MG A1001 O2A ANP A 666 1555 1555 2.55 LINK MG MG B1002 O2A ANP B1666 1555 1555 2.53 LINK MG MG B1002 OE2 GLU B 328 1555 1555 2.68 LINK MG MG B1002 OG1 THR B 184 1555 1555 2.65 CISPEP 1 SER A 330 PRO A 331 0 -5.38 CISPEP 2 SER B 330 PRO B 331 0 -4.35 SITE 1 AC1 4 THR A 184 GLU A 328 ANP A 666 HOH A1120 SITE 1 AC2 3 THR B 184 GLU B 328 ANP B1666 SITE 1 AC3 24 PHE A 229 HIS A 230 VAL A 231 TRP A 234 SITE 2 AC3 24 GLY A 302 SER A 303 ALA A 304 GLN A 322 SITE 3 AC3 24 GLY A 323 TYR A 324 GLY A 325 LEU A 326 SITE 4 AC3 24 THR A 327 ASP A 418 ARG A 433 LYS A 435 SITE 5 AC3 24 LYS A 439 TRP A 444 MG A1001 HOH A1034 SITE 6 AC3 24 HOH A1098 HOH A1191 HOH A1196 HOH A1226 SITE 1 AC4 26 PHE B 229 HIS B 230 VAL B 231 TRP B 234 SITE 2 AC4 26 GLY B 302 SER B 303 ALA B 304 GLN B 322 SITE 3 AC4 26 GLY B 323 TYR B 324 GLY B 325 LEU B 326 SITE 4 AC4 26 THR B 327 ASP B 418 ARG B 433 LYS B 435 SITE 5 AC4 26 LYS B 439 TRP B 444 MG B1002 HOH B1725 SITE 6 AC4 26 HOH B1733 HOH B1734 HOH B1739 HOH B1787 SITE 7 AC4 26 HOH B1801 HOH B1859 CRYST1 64.520 101.151 176.487 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005666 0.00000