PDB Short entry for 1V3H
HEADER    HYDROLASE                               02-NOV-03   1V3H              
TITLE     THE ROLES OF GLU186 AND GLU380 IN THE CATALYTIC REACTION OF SOYBEAN   
TITLE    2 BETA-AMYLASE                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: BETA-AMYLASE;                                              
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: 1,4-ALPHA-D-GLUCAN MALTOHYDROLASE;                          
COMPND   5 EC: 3.2.1.2;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: GLYCINE MAX;                                    
SOURCE   3 ORGANISM_COMMON: SOYBEAN;                                            
SOURCE   4 ORGANISM_TAXID: 3847;                                                
SOURCE   5 GENE: BMY1;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: JM105;                                     
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PKK233-2                                  
KEYWDS    (BETA/ALPHA)8 BARREL, HYDROLASE                                       
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.N.KANG,M.ADACHI,S.UTSUMI,B.MIKAMI                                   
REVDAT   5   25-OCT-23 1V3H    1       REMARK                                   
REVDAT   4   10-NOV-21 1V3H    1       SEQADV HETSYN                            
REVDAT   3   29-JUL-20 1V3H    1       COMPND REMARK HETNAM LINK                
REVDAT   3 2                   1       SITE   ATOM                              
REVDAT   2   24-FEB-09 1V3H    1       VERSN                                    
REVDAT   1   22-JUN-04 1V3H    0                                                
JRNL        AUTH   Y.N.KANG,M.ADACHI,S.UTSUMI,B.MIKAMI                          
JRNL        TITL   THE ROLES OF GLU186 AND GLU380 IN THE CATALYTIC REACTION OF  
JRNL        TITL 2 SOYBEAN BETA-AMYLASE.                                        
JRNL        REF    J.MOL.BIOL.                   V. 339  1129 2004              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   15178253                                                     
JRNL        DOI    10.1016/J.JMB.2004.04.029                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.60 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.81                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 2236708.550                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 99.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 80031                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.163                           
REMARK   3   FREE R VALUE                     : 0.181                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 4054                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.003                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.60                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.70                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 99.90                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 12576                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1930                       
REMARK   3   BIN FREE R VALUE                    : 0.2260                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.10                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 673                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.009                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3921                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 86                                      
REMARK   3   SOLVENT ATOMS            : 787                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 15.90                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 17.30                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 2.90000                                              
REMARK   3    B22 (A**2) : 2.43000                                              
REMARK   3    B33 (A**2) : -5.33000                                             
REMARK   3    B12 (A**2) : 1.28000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.15                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.08                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.17                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.11                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.005                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.300                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 22.20                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.840                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 0.940 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 1.450 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 1.730 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 2.550 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.42                                                 
REMARK   3   BSOL        : 59.70                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : CARBOHYDRATE.PARAM                             
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : CIS_PEPTIDE.PARAM                              
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : NULL                                           
REMARK   3  TOPOLOGY FILE  3   : NULL                                           
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3  TOPOLOGY FILE  5   : NULL                                           
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1V3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000006158.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 25-NOV-02                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.4                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL41XU                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.986                              
REMARK 200  MONOCHROMATOR                  : ROTATED-INCLINED DOUBLE-CRYSTAL    
REMARK 200                                   MONOCHROMATOR                      
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 80563                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 99.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 1.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.3                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.04300                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.65                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.14100                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT        
REMARK 200 SOFTWARE USED: CNS 1.1                                               
REMARK 200 STARTING MODEL: PDB ENTRY 1BYB                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 44.91                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, 2      
REMARK 280  -MERCAPTOETHANOL, EDTA, PH 5.4, VAPOR DIFFUSION, HANGING DROP,      
REMARK 280  TEMPERATURE 277K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   Y,X,-Z                                                  
REMARK 290       5555   X-Y,-Y,-Z+2/3                                           
REMARK 290       6555   -X,-X+Y,-Z+1/3                                          
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       47.98633            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       95.97267            
REMARK 290   SMTRY1   4 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   5  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       95.97267            
REMARK 290   SMTRY1   6 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       47.98633            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER                         
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A1062  LIES ON A SPECIAL POSITION.                          
REMARK 375      HOH A1237  LIES ON A SPECIAL POSITION.                          
REMARK 375      HOH A1240  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ALA A     1                                                      
REMARK 465     THR A     2                                                      
REMARK 465     SER A     3                                                      
REMARK 465     ASP A     4                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   NH2  ARG A   162     O    HOH A  1266              2.00            
REMARK 500   O    HOH A   738     O    HOH A  1274              2.05            
REMARK 500   O    HOH A  1153     O    HOH A  1287              2.07            
REMARK 500   O    HOH A  1084     O    HOH A  1277              2.10            
REMARK 500   O    HOH A   830     O    HOH A  1247              2.12            
REMARK 500   O    HOH A  1118     O    HOH A  1271              2.15            
REMARK 500   O    HOH A   896     O    HOH A  1189              2.17            
REMARK 500   O    HOH A  1225     O    HOH A  1259              2.18            
REMARK 500   O    HOH A   943     O    HOH A  1242              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A  1254     O    HOH A  1271     3564     0.45            
REMARK 500   O    HOH A   739     O    HOH A  1276     6655     1.96            
REMARK 500   O    HOH A  1002     O    HOH A  1261     2665     2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A  65       17.77     59.95                                   
REMARK 500    PHE A  92       31.31    -92.59                                   
REMARK 500    PHE A 145       79.71   -107.69                                   
REMARK 500    PRO A 201       47.43   -103.53                                   
REMARK 500    PHE A 341     -156.26    -97.14                                   
REMARK 500    ASP A 494     -138.13    -97.59                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1BYA   RELATED DB: PDB                                   
REMARK 900 SOYBEAN BETA-AMYLASE (APO FORM)                                      
REMARK 900 RELATED ID: 1BYB   RELATED DB: PDB                                   
REMARK 900 SOYBEAN BETA-AMYLASE REACTED WITH 200MM MALTOSE AND COMPLEXED WITH   
REMARK 900 MALTOTETRAOSE                                                        
REMARK 900 RELATED ID: 1BYC   RELATED DB: PDB                                   
REMARK 900 SOYBEAN BETA-AMYLASE REACTED WITH 8MM MALTOSE AND COMPLEXED WITH     
REMARK 900 MALTOTETRAOSE                                                        
REMARK 900 RELATED ID: 1BYD   RELATED DB: PDB                                   
REMARK 900 SOYBEAN BETA-AMYLASE REACTED WITH 100MM MALTAL AND COMPLEXED WITH D- 
REMARK 900 DEOXYMALTOSE                                                         
REMARK 900 RELATED ID: 1BFN   RELATED DB: PDB                                   
REMARK 900 RECOMBINANT SOYBEAN BETA-AMYLASE COMPLEXED WITH BETA-CYCLODEXTRIN    
REMARK 900 RELATED ID: 1V3I   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN COMPLEXED WITH MALTOSE                              
DBREF  1V3H A    1   495  UNP    P10538   AMYB_SOYBN       1    495             
SEQADV 1V3H LEU A   76  UNP  P10538    PHE    76 ENGINEERED MUTATION            
SEQADV 1V3H GLN A  186  UNP  P10538    GLU   186 ENGINEERED MUTATION            
SEQADV 1V3H GLY A  202  UNP  P10538    ARG   202 SEE REMARK 999                 
SEQADV 1V3H ARG A  399  UNP  P10538    LYS   399 SEE REMARK 999                 
SEQRES   1 A  495  ALA THR SER ASP SER ASN MET LEU LEU ASN TYR VAL PRO          
SEQRES   2 A  495  VAL TYR VAL MET LEU PRO LEU GLY VAL VAL ASN VAL ASP          
SEQRES   3 A  495  ASN VAL PHE GLU ASP PRO ASP GLY LEU LYS GLU GLN LEU          
SEQRES   4 A  495  LEU GLN LEU ARG ALA ALA GLY VAL ASP GLY VAL MET VAL          
SEQRES   5 A  495  ASP VAL TRP TRP GLY ILE ILE GLU LEU LYS GLY PRO LYS          
SEQRES   6 A  495  GLN TYR ASP TRP ARG ALA TYR ARG SER LEU LEU GLN LEU          
SEQRES   7 A  495  VAL GLN GLU CYS GLY LEU THR LEU GLN ALA ILE MET SER          
SEQRES   8 A  495  PHE HIS GLN CYS GLY GLY ASN VAL GLY ASP ILE VAL ASN          
SEQRES   9 A  495  ILE PRO ILE PRO GLN TRP VAL LEU ASP ILE GLY GLU SER          
SEQRES  10 A  495  ASN HIS ASP ILE PHE TYR THR ASN ARG SER GLY THR ARG          
SEQRES  11 A  495  ASN LYS GLU TYR LEU THR VAL GLY VAL ASP ASN GLU PRO          
SEQRES  12 A  495  ILE PHE HIS GLY ARG THR ALA ILE GLU ILE TYR SER ASP          
SEQRES  13 A  495  TYR MET LYS SER PHE ARG GLU ASN MET SER ASP PHE LEU          
SEQRES  14 A  495  GLU SER GLY LEU ILE ILE ASP ILE GLU VAL GLY LEU GLY          
SEQRES  15 A  495  PRO ALA GLY GLN LEU ARG TYR PRO SER TYR PRO GLN SER          
SEQRES  16 A  495  GLN GLY TRP GLU PHE PRO GLY ILE GLY GLU PHE GLN CYS          
SEQRES  17 A  495  TYR ASP LYS TYR LEU LYS ALA ASP PHE LYS ALA ALA VAL          
SEQRES  18 A  495  ALA ARG ALA GLY HIS PRO GLU TRP GLU LEU PRO ASP ASP          
SEQRES  19 A  495  ALA GLY LYS TYR ASN ASP VAL PRO GLU SER THR GLY PHE          
SEQRES  20 A  495  PHE LYS SER ASN GLY THR TYR VAL THR GLU LYS GLY LYS          
SEQRES  21 A  495  PHE PHE LEU THR TRP TYR SER ASN LYS LEU LEU ASN HIS          
SEQRES  22 A  495  GLY ASP GLN ILE LEU ASP GLU ALA ASN LYS ALA PHE LEU          
SEQRES  23 A  495  GLY CYS LYS VAL LYS LEU ALA ILE LYS VAL SER GLY ILE          
SEQRES  24 A  495  HIS TRP TRP TYR LYS VAL GLU ASN HIS ALA ALA GLU LEU          
SEQRES  25 A  495  THR ALA GLY TYR TYR ASN LEU ASN ASP ARG ASP GLY TYR          
SEQRES  26 A  495  ARG PRO ILE ALA ARG MET LEU SER ARG HIS HIS ALA ILE          
SEQRES  27 A  495  LEU ASN PHE THR CYS LEU GLU MET ARG ASP SER GLU GLN          
SEQRES  28 A  495  PRO SER ASP ALA LYS SER GLY PRO GLN GLU LEU VAL GLN          
SEQRES  29 A  495  GLN VAL LEU SER GLY GLY TRP ARG GLU ASP ILE ARG VAL          
SEQRES  30 A  495  ALA GLY GLU ASN ALA LEU PRO ARG TYR ASP ALA THR ALA          
SEQRES  31 A  495  TYR ASN GLN ILE ILE LEU ASN ALA ARG PRO GLN GLY VAL          
SEQRES  32 A  495  ASN ASN ASN GLY PRO PRO LYS LEU SER MET PHE GLY VAL          
SEQRES  33 A  495  THR TYR LEU ARG LEU SER ASP ASP LEU LEU GLN LYS SER          
SEQRES  34 A  495  ASN PHE ASN ILE PHE LYS LYS PHE VAL LEU LYS MET HIS          
SEQRES  35 A  495  ALA ASP GLN ASP TYR CYS ALA ASN PRO GLN LYS TYR ASN          
SEQRES  36 A  495  HIS ALA ILE THR PRO LEU LYS PRO SER ALA PRO LYS ILE          
SEQRES  37 A  495  PRO ILE GLU VAL LEU LEU GLU ALA THR LYS PRO THR LEU          
SEQRES  38 A  495  PRO PHE PRO TRP LEU PRO GLU THR ASP MET LYS VAL ASP          
SEQRES  39 A  495  GLY                                                          
HET    GLC  B   1      12                                                       
HET    GLC  B   2      11                                                       
HET    GLC  B   3      11                                                       
HET    GLC  B   4      11                                                       
HET    GLC  B   5      11                                                       
HET    SO4  A2000       5                                                       
HET    SO4  A2001       5                                                       
HET    SO4  A2002       5                                                       
HET    SO4  A2003       5                                                       
HET    SO4  A2004       5                                                       
HET    SO4  A2005       5                                                       
HETNAM     GLC ALPHA-D-GLUCOPYRANOSE                                            
HETNAM     SO4 SULFATE ION                                                      
HETSYN     GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE                              
FORMUL   2  GLC    5(C6 H12 O6)                                                 
FORMUL   3  SO4    6(O4 S 2-)                                                   
FORMUL   9  HOH   *787(H2 O)                                                    
HELIX    1   1 MET A    7  TYR A   11  5                                   5    
HELIX    2   2 ASP A   31  ALA A   45  1                                  15    
HELIX    3   3 TRP A   56  GLU A   60  1                                   5    
HELIX    4   4 TRP A   69  CYS A   82  1                                  14    
HELIX    5   5 PRO A  108  ASN A  118  1                                  11    
HELIX    6   6 VAL A  137  ASP A  140  5                                   4    
HELIX    7   7 THR A  149  MET A  165  1                                  17    
HELIX    8   8 MET A  165  SER A  171  1                                   7    
HELIX    9   9 GLY A  182  GLN A  186  5                                   5    
HELIX   10  10 PRO A  193  GLY A  197  5                                   5    
HELIX   11  11 ASP A  210  ALA A  224  1                                  15    
HELIX   12  12 VAL A  241  THR A  245  5                                   5    
HELIX   13  13 GLY A  252  VAL A  255  5                                   4    
HELIX   14  14 THR A  256  LEU A  286  1                                  31    
HELIX   15  15 HIS A  308  GLY A  315  1                                   8    
HELIX   16  16 TYR A  325  ARG A  334  1                                  10    
HELIX   17  17 ARG A  347  GLN A  351  5                                   5    
HELIX   18  18 PRO A  352  LYS A  356  5                                   5    
HELIX   19  19 GLY A  358  GLU A  373  1                                  16    
HELIX   20  20 ASP A  387  ARG A  399  1                                  13    
HELIX   21  21 GLN A  427  HIS A  442  1                                  16    
HELIX   22  22 ASN A  450  ASN A  455  5                                   6    
HELIX   23  23 PRO A  469  LEU A  474  1                                   6    
HELIX   24  24 GLU A  475  LYS A  478  5                                   4    
SHEET    1   A 9 VAL A  14  MET A  17  0                                        
SHEET    2   A 9 GLY A  49  TRP A  55  1  O  MET A  51   N  VAL A  16           
SHEET    3   A 9 THR A  85  SER A  91  1  O  ILE A  89   N  VAL A  52           
SHEET    4   A 9 ILE A 174  VAL A 179  1  O  GLU A 178   N  MET A  90           
SHEET    5   A 9 LYS A 291  LYS A 295  1  O  LYS A 291   N  ILE A 177           
SHEET    6   A 9 ILE A 338  PHE A 341  1  O  ASN A 340   N  ILE A 294           
SHEET    7   A 9 VAL A 377  GLU A 380  1  O  ALA A 378   N  PHE A 341           
SHEET    8   A 9 GLY A 415  TYR A 418  1  O  THR A 417   N  GLY A 379           
SHEET    9   A 9 VAL A  14  MET A  17  1  N  TYR A  15   O  TYR A 418           
SHEET    1   B 2 PHE A 122  THR A 124  0                                        
SHEET    2   B 2 ARG A 130  LEU A 135 -1  O  ASN A 131   N  TYR A 123           
LINK         O4  GLC B   1                 C1  GLC B   2     1555   1555  1.40  
LINK         O4  GLC B   2                 C1  GLC B   3     1555   1555  1.40  
LINK         O4  GLC B   3                 C1  GLC B   4     1555   1555  1.40  
LINK         O4  GLC B   4                 C1  GLC B   5     1555   1555  1.40  
CISPEP   1 PHE A  200    PRO A  201          0         0.38                     
CISPEP   2 LEU A  419    ARG A  420          0         0.81                     
CRYST1   85.379   85.379  143.959  90.00  90.00 120.00 P 31 2 1      6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.011713  0.006762  0.000000        0.00000                         
SCALE2      0.000000  0.013524  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006946        0.00000