PDB Short entry for 1VCN HEADER LIGASE 10-MAR-04 1VCN TITLE CRYSTAL STRUCTURE OF T.TH. HB8 CTP SYNTHETASE COMPLEX WITH SULFATE TITLE 2 ANION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTP SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.4.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS TETRAMER, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 2 STRUCTURAL GENOMICS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GOTO,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 1VCN 1 VERSN REVDAT 2 24-FEB-09 1VCN 1 VERSN REVDAT 1 31-AUG-04 1VCN 0 JRNL AUTH M.GOTO,R.OMI,N.NAKAGAWA,I.MIYAHARA,K.HIROTSU JRNL TITL CRYSTAL STRUCTURES OF CTP SYNTHETASE REVEAL ATP, UTP, AND JRNL TITL 2 GLUTAMINE BINDING SITES JRNL REF STRUCTURE V. 12 1413 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15296735 JRNL DOI 10.1016/J.STR.2004.05.013 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3577 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.28 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB006467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, GLYCEROL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.20500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.17000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.20500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.17000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.20500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.55000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.17000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.20500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.55000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CTPS IS IN AN EQUILIBRIUM STATE BETWEEN A MONOMER, A DIMER, REMARK 300 AND A TETRAMER DEPENDING ON A PROTEIN CONCENTRATION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -257.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 142.34000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 142.34000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 62 REMARK 465 PRO A 63 REMARK 465 TYR A 64 REMARK 465 GLU A 65 REMARK 465 HIS A 66 REMARK 465 GLU A 253 REMARK 465 LYS A 295 REMARK 465 TYR A 309 REMARK 465 VAL A 310 REMARK 465 LYS A 311 REMARK 465 MET A 312 REMARK 465 GLU A 342 REMARK 465 SER A 343 REMARK 465 LEU A 344 REMARK 465 GLU A 345 REMARK 465 PHE A 365 REMARK 465 GLY A 366 REMARK 465 PRO A 429 REMARK 465 GLU A 430 REMARK 465 GLN A 431 REMARK 465 LEU A 432 REMARK 465 GLU A 433 REMARK 465 VAL A 434 REMARK 465 GLU A 435 REMARK 465 GLY A 436 REMARK 465 LEU A 437 REMARK 465 GLY A 438 REMARK 465 GLY A 439 REMARK 465 ARG A 498 REMARK 465 GLY A 499 REMARK 465 ARG A 500 REMARK 465 GLU A 548 REMARK 465 ARG A 549 REMARK 465 ALA A 550 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 ASP A 348 CG OD1 OD2 REMARK 470 ASP A 350 CG OD1 OD2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 ARG A 354 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 355 CG OD1 OD2 REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 ARG A 449 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 470 MET A 530 CG SD CE REMARK 470 ARG A 531 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 547 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 512 CB - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 512 N - CA - C ANGL. DEV. = 30.1 DEGREES REMARK 500 HIS A 513 N - CA - CB ANGL. DEV. = -23.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 21 -64.61 79.16 REMARK 500 PRO A 297 -142.51 -80.81 REMARK 500 THR A 300 103.64 -174.52 REMARK 500 ARG A 331 44.38 31.02 REMARK 500 ALA A 347 18.68 -61.82 REMARK 500 ASP A 348 39.12 -83.81 REMARK 500 ASP A 350 -45.56 -28.97 REMARK 500 CYS A 391 -98.07 53.02 REMARK 500 VAL A 405 -44.97 -134.67 REMARK 500 LEU A 408 77.96 -118.86 REMARK 500 ASP A 417 83.00 -170.09 REMARK 500 ARG A 470 82.25 -168.67 REMARK 500 ALA A 502 -146.44 -141.60 REMARK 500 PHE A 515 110.25 -177.31 REMARK 500 ARG A 531 83.81 -153.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 512 18.5 L L OUTSIDE RANGE REMARK 500 HIS A 513 56.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 642 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH A 715 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 630 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VCM RELATED DB: PDB REMARK 900 NATIVE T.TH. HB8 CTP SYNTHETASE REMARK 900 RELATED ID: 1VCO RELATED DB: PDB REMARK 900 T.TH. HB8 CTP SYNTHETASE COMPLEX WITH GLUTAMINE REMARK 900 RELATED ID: TTK003000122.2 RELATED DB: TARGETDB DBREF 1VCN A 1 550 UNP Q5SIA8 PYRG_THET8 1 550 SEQRES 1 A 550 MET ASN GLY SER ALA ASP ALA GLY PRO ARG PRO ARG LYS SEQRES 2 A 550 TYR VAL PHE ILE THR GLY GLY VAL VAL SER SER LEU GLY SEQRES 3 A 550 LYS GLY ILE LEU THR SER SER LEU GLY ALA LEU LEU ARG SEQRES 4 A 550 ALA ARG GLY TYR ARG VAL THR ALA ILE LYS ILE ASP PRO SEQRES 5 A 550 TYR VAL ASN VAL ASP ALA GLY THR MET ARG PRO TYR GLU SEQRES 6 A 550 HIS GLY GLU VAL PHE VAL THR ALA ASP GLY ALA GLU THR SEQRES 7 A 550 ASP LEU ASP ILE GLY HIS TYR GLU ARG PHE LEU ASP MET SEQRES 8 A 550 ASP LEU SER ARG GLY ASN ASN LEU THR THR GLY GLN VAL SEQRES 9 A 550 TYR LEU SER VAL ILE GLN LYS GLU ARG ARG GLY GLU TYR SEQRES 10 A 550 LEU SER GLN THR VAL GLN VAL ILE PRO HIS ILE THR ASP SEQRES 11 A 550 GLU ILE LYS GLU ARG ILE ARG LYS VAL ALA GLU GLU GLN SEQRES 12 A 550 LYS ALA GLU ILE VAL VAL VAL GLU VAL GLY GLY THR VAL SEQRES 13 A 550 GLY ASP ILE GLU SER LEU PRO PHE LEU GLU ALA ILE ARG SEQRES 14 A 550 GLN PHE ARG PHE ASP GLU GLY GLU GLY ASN THR LEU TYR SEQRES 15 A 550 LEU HIS LEU THR LEU VAL PRO TYR LEU GLU THR SER GLU SEQRES 16 A 550 GLU PHE LYS THR LYS PRO THR GLN HIS SER VAL ALA THR SEQRES 17 A 550 LEU ARG GLY VAL GLY ILE GLN PRO ASP ILE LEU VAL LEU SEQRES 18 A 550 ARG SER ALA ARG PRO VAL PRO GLU GLU VAL ARG ARG LYS SEQRES 19 A 550 VAL ALA LEU PHE THR ASN VAL ARG PRO GLY HIS VAL PHE SEQRES 20 A 550 SER SER PRO THR VAL GLU HIS LEU TYR GLU VAL PRO LEU SEQRES 21 A 550 LEU LEU GLU GLU GLN GLY LEU GLY ARG ALA VAL GLU ARG SEQRES 22 A 550 ALA LEU GLY LEU GLU ALA VAL ILE PRO ASN LEU SER PHE SEQRES 23 A 550 TRP GLN GLU ALA VAL ARG VAL LEU LYS HIS PRO GLU ARG SEQRES 24 A 550 THR VAL LYS ILE ALA ILE ALA GLY LYS TYR VAL LYS MET SEQRES 25 A 550 PRO ASP ALA TYR LEU SER LEU LEU GLU ALA LEU ARG HIS SEQRES 26 A 550 ALA GLY ILE LYS ASN ARG ALA ARG VAL GLU VAL LYS TRP SEQRES 27 A 550 VAL ASP ALA GLU SER LEU GLU ALA ALA ASP LEU ASP GLU SEQRES 28 A 550 ALA PHE ARG ASP VAL SER GLY ILE LEU VAL PRO GLY GLY SEQRES 29 A 550 PHE GLY VAL ARG GLY ILE GLU GLY LYS VAL ARG ALA ALA SEQRES 30 A 550 GLN TYR ALA ARG GLU ARG LYS ILE PRO TYR LEU GLY ILE SEQRES 31 A 550 CYS LEU GLY LEU GLN ILE ALA VAL ILE GLU PHE ALA ARG SEQRES 32 A 550 ASN VAL ALA GLY LEU LYS GLY ALA ASN SER THR GLU PHE SEQRES 33 A 550 ASP PRO HIS THR PRO HIS PRO VAL ILE ASP LEU MET PRO SEQRES 34 A 550 GLU GLN LEU GLU VAL GLU GLY LEU GLY GLY THR MET ARG SEQRES 35 A 550 LEU GLY ASP TRP PRO MET ARG ILE LYS PRO GLY THR LEU SEQRES 36 A 550 LEU HIS ARG LEU TYR GLY LYS GLU GLU VAL LEU GLU ARG SEQRES 37 A 550 HIS ARG HIS ARG TYR GLU VAL ASN PRO LEU TYR VAL ASP SEQRES 38 A 550 GLY LEU GLU ARG ALA GLY LEU VAL VAL SER ALA THR THR SEQRES 39 A 550 PRO GLY MET ARG GLY ARG GLY ALA GLY LEU VAL GLU ALA SEQRES 40 A 550 ILE GLU LEU LYS ASP HIS PRO PHE PHE LEU GLY LEU GLN SEQRES 41 A 550 SER HIS PRO GLU PHE LYS SER ARG PRO MET ARG PRO SER SEQRES 42 A 550 PRO PRO PHE VAL GLY PHE VAL GLU ALA ALA LEU ALA TYR SEQRES 43 A 550 GLN GLU ARG ALA HET SO4 A 610 5 HET SO4 A 620 5 HET SO4 A 630 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *256(H2 O) HELIX 1 1 GLY A 26 ALA A 40 1 15 HELIX 2 2 LEU A 80 ASP A 90 1 11 HELIX 3 3 SER A 94 GLY A 96 5 3 HELIX 4 4 THR A 101 ARG A 114 1 14 HELIX 5 5 PRO A 126 GLN A 143 1 18 HELIX 6 6 ASP A 158 GLU A 160 5 3 HELIX 7 7 SER A 161 GLY A 176 1 16 HELIX 8 8 THR A 199 VAL A 212 1 14 HELIX 9 9 PRO A 228 PHE A 238 1 11 HELIX 10 10 ARG A 242 GLY A 244 5 3 HELIX 11 11 TYR A 256 GLY A 266 1 11 HELIX 12 12 GLY A 266 LEU A 275 1 10 HELIX 13 13 LEU A 284 LEU A 294 1 11 HELIX 14 14 PRO A 313 ALA A 315 5 3 HELIX 15 15 TYR A 316 ASN A 330 1 15 HELIX 16 16 ASP A 348 PHE A 353 1 6 HELIX 17 17 ILE A 370 ARG A 383 1 14 HELIX 18 18 CYS A 391 VAL A 405 1 15 HELIX 19 19 THR A 454 GLY A 461 1 8 HELIX 20 20 TYR A 479 ALA A 486 1 8 HELIX 21 21 HIS A 522 SER A 527 5 6 HELIX 22 22 SER A 533 TYR A 546 1 14 SHEET 1 A 7 ASN A 98 THR A 100 0 SHEET 2 A 7 VAL A 45 ASP A 51 1 N ASP A 51 O LEU A 99 SHEET 3 A 7 ILE A 147 VAL A 152 1 O GLU A 151 N ILE A 48 SHEET 4 A 7 LYS A 13 GLY A 19 1 N ILE A 17 O VAL A 150 SHEET 5 A 7 THR A 180 LEU A 187 1 O LEU A 183 N PHE A 16 SHEET 6 A 7 ILE A 218 ARG A 222 1 O ILE A 218 N HIS A 184 SHEET 7 A 7 VAL A 246 SER A 248 1 O PHE A 247 N LEU A 221 SHEET 1 B 2 PHE A 70 VAL A 71 0 SHEET 2 B 2 GLU A 77 THR A 78 -1 O THR A 78 N PHE A 70 SHEET 1 C 2 TYR A 190 LEU A 191 0 SHEET 2 C 2 GLU A 196 PHE A 197 -1 O GLU A 196 N LEU A 191 SHEET 1 D 9 ALA A 332 VAL A 339 0 SHEET 2 D 9 ARG A 299 ALA A 306 1 N ILE A 303 O GLU A 335 SHEET 3 D 9 ILE A 359 VAL A 361 1 O LEU A 360 N ALA A 306 SHEET 4 D 9 TYR A 387 ILE A 390 1 O ILE A 390 N VAL A 361 SHEET 5 D 9 PHE A 516 LEU A 519 1 O LEU A 517 N TYR A 387 SHEET 6 D 9 VAL A 505 GLU A 509 -1 N ILE A 508 O GLY A 518 SHEET 7 D 9 VAL A 489 THR A 493 -1 N ALA A 492 O GLU A 506 SHEET 8 D 9 PRO A 423 ILE A 450 -1 N ARG A 449 O THR A 493 SHEET 9 D 9 ASN A 412 SER A 413 1 N ASN A 412 O ILE A 425 SHEET 1 E 9 ALA A 332 VAL A 339 0 SHEET 2 E 9 ARG A 299 ALA A 306 1 N ILE A 303 O GLU A 335 SHEET 3 E 9 ILE A 359 VAL A 361 1 O LEU A 360 N ALA A 306 SHEET 4 E 9 TYR A 387 ILE A 390 1 O ILE A 390 N VAL A 361 SHEET 5 E 9 PHE A 516 LEU A 519 1 O LEU A 517 N TYR A 387 SHEET 6 E 9 VAL A 505 GLU A 509 -1 N ILE A 508 O GLY A 518 SHEET 7 E 9 VAL A 489 THR A 493 -1 N ALA A 492 O GLU A 506 SHEET 8 E 9 PRO A 423 ILE A 450 -1 N ARG A 449 O THR A 493 SHEET 9 E 9 GLU A 464 VAL A 475 -1 O GLU A 474 N ASP A 426 CISPEP 1 ILE A 125 PRO A 126 0 0.61 SITE 1 AC1 7 LYS A 27 LYS A 49 GLU A 151 GLY A 153 SITE 2 AC1 7 GLY A 154 HOH A 644 HOH A 873 SITE 1 AC2 8 SER A 24 LEU A 25 GLY A 26 LYS A 27 SITE 2 AC2 8 GLY A 28 HOH A 637 HOH A 638 HOH A 648 SITE 1 AC3 6 LYS A 198 THR A 199 LYS A 200 LYS A 234 SITE 2 AC3 6 HOH A 662 HOH A 719 CRYST1 90.410 117.100 142.340 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011061 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007025 0.00000