PDB Short entry for 1VDK HEADER LYASE 23-MAR-04 1VDK TITLE CRYSTAL STRUCTURE OF FUMARASE FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE HYDRATASE CLASS II; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FUMARASE C; COMPND 5 EC: 4.2.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS FUMARASE, TCA CYCLE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, STRUCTURAL GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 1VDK 1 VERSN REVDAT 2 24-FEB-09 1VDK 1 VERSN REVDAT 1 13-APR-04 1VDK 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF FUMARASE FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3409617.190 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 109925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5515 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10388 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 524 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 648 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.59000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : 2.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 58.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB006495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.560 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1FUO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3000, 0.1M HEPES, 0.2M NACL, PH REMARK 280 7.4, MICROBATCH, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.68600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.68600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.66800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.06100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.66800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.06100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.68600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.66800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.06100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.68600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.66800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.06100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X+1, Y, -Z+1/2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 125.33600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.68600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 3 REMARK 465 GLU A 431 REMARK 465 LYS A 432 REMARK 465 GLU A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 TYR B 3 REMARK 465 GLY B 317 REMARK 465 SER B 318 REMARK 465 SER B 319 REMARK 465 GLU B 464 REMARK 465 GLY B 465 REMARK 465 ALA B 466 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 339 NH2 ARG B 339 3655 1.75 REMARK 500 NH1 ARG B 452 NH1 ARG B 452 4555 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 96 -149.94 -116.81 REMARK 500 LEU A 189 -1.49 82.93 REMARK 500 ALA A 192 -161.95 -124.93 REMARK 500 THR A 230 -133.07 47.94 REMARK 500 ASN A 237 -3.65 85.17 REMARK 500 HIS A 271 51.30 -141.22 REMARK 500 PHE A 356 -124.61 49.88 REMARK 500 VAL A 360 49.07 -106.83 REMARK 500 LEU A 387 -63.05 -147.56 REMARK 500 ALA A 428 36.70 -84.60 REMARK 500 LEU A 429 -75.63 -146.36 REMARK 500 ASP A 451 -7.80 -59.74 REMARK 500 GLN B 96 -143.38 -114.07 REMARK 500 ARG B 159 -50.49 -122.59 REMARK 500 ALA B 192 -98.39 -112.32 REMARK 500 THR B 230 -130.82 50.76 REMARK 500 ASN B 237 7.57 81.36 REMARK 500 ILE B 306 -60.30 -92.52 REMARK 500 PHE B 356 -124.79 51.53 REMARK 500 VAL B 360 47.38 -104.51 REMARK 500 LEU B 387 -63.53 -146.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 367 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 669 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 722 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 776 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH B 623 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH B 707 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B 731 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH B 740 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH B 754 DISTANCE = 5.07 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000543.1 RELATED DB: TARGETDB DBREF 1VDK A 1 466 UNP P84127 P84127_THETH 1 466 DBREF 1VDK B 1 466 UNP P84127 P84127_THETH 1 466 SEQRES 1 A 466 MET GLU TYR ARG ILE GLU ARG ASP THR MET GLY GLU VAL SEQRES 2 A 466 ARG VAL PRO ALA ASP LYS TYR TRP GLY ALA GLN THR GLN SEQRES 3 A 466 ARG SER LEU GLU ASN PHE ARG ILE GLY THR ASP ARG PHE SEQRES 4 A 466 ARG MET PRO LEU GLU ILE ILE ARG ALA TYR GLY MET LEU SEQRES 5 A 466 LYS LYS ALA ALA ALA ARG ALA ASN LEU GLU LEU GLY GLU SEQRES 6 A 466 LEU PRO GLU GLU ILE ALA LYS ALA ILE ILE GLN ALA ALA SEQRES 7 A 466 GLU GLU VAL VAL GLN GLY LYS TRP ASP ASP HIS PHE PRO SEQRES 8 A 466 LEU VAL VAL PHE GLN THR GLY SER GLY THR GLN THR ASN SEQRES 9 A 466 MET ASN VAL ASN GLU VAL ILE ALA ASN ARG ALA SER GLU SEQRES 10 A 466 ILE LEU GLY LYS PRO LEU GLY SER LYS TYR ALA HIS PRO SEQRES 11 A 466 ASN ASP HIS VAL ASN ARG GLY GLN SER SER ASN ASP THR SEQRES 12 A 466 PHE PRO THR ALA MET TYR VAL ALA VAL ALA LEU ALA LEU SEQRES 13 A 466 HIS GLN ARG LEU TYR PRO ALA VAL GLU GLY LEU ILE ARG SEQRES 14 A 466 THR PHE THR ALA LYS ALA GLN ALA PHE ASP GLN ILE VAL SEQRES 15 A 466 LYS VAL GLY ARG THR HIS LEU MET ASP ALA VAL PRO ILE SEQRES 16 A 466 THR LEU GLY GLN GLU ILE GLY SER TRP ALA ALA GLN LEU SEQRES 17 A 466 LYS THR THR LEU ALA ALA VAL LYS GLU MET GLU LYS GLY SEQRES 18 A 466 LEU TYR ASN LEU ALA ILE GLY GLY THR ALA VAL GLY THR SEQRES 19 A 466 GLY LEU ASN ALA HIS PRO ARG PHE GLY GLU LEU VAL ALA SEQRES 20 A 466 LYS TYR LEU ALA GLU GLU THR GLY LEU PRO PHE ARG VAL SEQRES 21 A 466 ALA GLU ASN ARG PHE ALA ALA LEU ALA ALA HIS ASP GLU SEQRES 22 A 466 LEU VAL ASN VAL MET GLY ALA ILE ARG THR LEU ALA GLY SEQRES 23 A 466 ALA LEU MET LYS ILE GLY ASN ASP VAL ARG TRP LEU ALA SEQRES 24 A 466 SER GLY PRO TYR ALA GLY ILE GLY GLU ILE THR ILE PRO SEQRES 25 A 466 ALA ASN GLU PRO GLY SER SER ILE MET PRO GLY LYS VAL SEQRES 26 A 466 ASN PRO THR GLN VAL GLU ALA LEU THR MET VAL VAL VAL SEQRES 27 A 466 ARG VAL TYR GLY ASN ASP HIS THR VAL ALA PHE ALA GLY SEQRES 28 A 466 SER GLN GLY ASN PHE GLN LEU ASN VAL TYR LYS PRO VAL SEQRES 29 A 466 MET ALA TYR SER THR LEU GLU SER ILE ASN LEU LEU ALA SEQRES 30 A 466 ASP ALA VAL ALA SER PHE ASP ALA HIS LEU ALA GLN GLY SEQRES 31 A 466 ILE GLU PRO ASN LEU GLU ARG ILE GLU GLU TYR LEU GLN SEQRES 32 A 466 LYS ASN PRO MET LEU ALA THR ALA LEU ASN LYS ALA ILE SEQRES 33 A 466 GLY TYR ASP LYS ALA ALA GLU ILE VAL LYS LYS ALA LEU SEQRES 34 A 466 LYS GLU LYS LYS THR LEU LYS GLN ALA ALA LEU GLU LEU SEQRES 35 A 466 GLY TYR LEU THR GLU GLU GLU PHE ASP ARG ILE VAL VAL SEQRES 36 A 466 PRO MET ARG LEU ALA LYS PRO HIS GLU GLY ALA SEQRES 1 B 466 MET GLU TYR ARG ILE GLU ARG ASP THR MET GLY GLU VAL SEQRES 2 B 466 ARG VAL PRO ALA ASP LYS TYR TRP GLY ALA GLN THR GLN SEQRES 3 B 466 ARG SER LEU GLU ASN PHE ARG ILE GLY THR ASP ARG PHE SEQRES 4 B 466 ARG MET PRO LEU GLU ILE ILE ARG ALA TYR GLY MET LEU SEQRES 5 B 466 LYS LYS ALA ALA ALA ARG ALA ASN LEU GLU LEU GLY GLU SEQRES 6 B 466 LEU PRO GLU GLU ILE ALA LYS ALA ILE ILE GLN ALA ALA SEQRES 7 B 466 GLU GLU VAL VAL GLN GLY LYS TRP ASP ASP HIS PHE PRO SEQRES 8 B 466 LEU VAL VAL PHE GLN THR GLY SER GLY THR GLN THR ASN SEQRES 9 B 466 MET ASN VAL ASN GLU VAL ILE ALA ASN ARG ALA SER GLU SEQRES 10 B 466 ILE LEU GLY LYS PRO LEU GLY SER LYS TYR ALA HIS PRO SEQRES 11 B 466 ASN ASP HIS VAL ASN ARG GLY GLN SER SER ASN ASP THR SEQRES 12 B 466 PHE PRO THR ALA MET TYR VAL ALA VAL ALA LEU ALA LEU SEQRES 13 B 466 HIS GLN ARG LEU TYR PRO ALA VAL GLU GLY LEU ILE ARG SEQRES 14 B 466 THR PHE THR ALA LYS ALA GLN ALA PHE ASP GLN ILE VAL SEQRES 15 B 466 LYS VAL GLY ARG THR HIS LEU MET ASP ALA VAL PRO ILE SEQRES 16 B 466 THR LEU GLY GLN GLU ILE GLY SER TRP ALA ALA GLN LEU SEQRES 17 B 466 LYS THR THR LEU ALA ALA VAL LYS GLU MET GLU LYS GLY SEQRES 18 B 466 LEU TYR ASN LEU ALA ILE GLY GLY THR ALA VAL GLY THR SEQRES 19 B 466 GLY LEU ASN ALA HIS PRO ARG PHE GLY GLU LEU VAL ALA SEQRES 20 B 466 LYS TYR LEU ALA GLU GLU THR GLY LEU PRO PHE ARG VAL SEQRES 21 B 466 ALA GLU ASN ARG PHE ALA ALA LEU ALA ALA HIS ASP GLU SEQRES 22 B 466 LEU VAL ASN VAL MET GLY ALA ILE ARG THR LEU ALA GLY SEQRES 23 B 466 ALA LEU MET LYS ILE GLY ASN ASP VAL ARG TRP LEU ALA SEQRES 24 B 466 SER GLY PRO TYR ALA GLY ILE GLY GLU ILE THR ILE PRO SEQRES 25 B 466 ALA ASN GLU PRO GLY SER SER ILE MET PRO GLY LYS VAL SEQRES 26 B 466 ASN PRO THR GLN VAL GLU ALA LEU THR MET VAL VAL VAL SEQRES 27 B 466 ARG VAL TYR GLY ASN ASP HIS THR VAL ALA PHE ALA GLY SEQRES 28 B 466 SER GLN GLY ASN PHE GLN LEU ASN VAL TYR LYS PRO VAL SEQRES 29 B 466 MET ALA TYR SER THR LEU GLU SER ILE ASN LEU LEU ALA SEQRES 30 B 466 ASP ALA VAL ALA SER PHE ASP ALA HIS LEU ALA GLN GLY SEQRES 31 B 466 ILE GLU PRO ASN LEU GLU ARG ILE GLU GLU TYR LEU GLN SEQRES 32 B 466 LYS ASN PRO MET LEU ALA THR ALA LEU ASN LYS ALA ILE SEQRES 33 B 466 GLY TYR ASP LYS ALA ALA GLU ILE VAL LYS LYS ALA LEU SEQRES 34 B 466 LYS GLU LYS LYS THR LEU LYS GLN ALA ALA LEU GLU LEU SEQRES 35 B 466 GLY TYR LEU THR GLU GLU GLU PHE ASP ARG ILE VAL VAL SEQRES 36 B 466 PRO MET ARG LEU ALA LYS PRO HIS GLU GLY ALA FORMUL 3 HOH *648(H2 O) HELIX 1 1 GLY A 22 PHE A 32 1 11 HELIX 2 2 PRO A 42 LEU A 63 1 22 HELIX 3 3 PRO A 67 GLN A 83 1 17 HELIX 4 4 TRP A 86 PHE A 90 5 5 HELIX 5 5 GLY A 100 LEU A 119 1 20 HELIX 6 6 SER A 139 ARG A 159 1 21 HELIX 7 7 ARG A 159 PHE A 178 1 20 HELIX 8 8 LEU A 197 LYS A 220 1 24 HELIX 9 9 ARG A 241 GLY A 255 1 15 HELIX 10 10 PHE A 265 ALA A 270 1 6 HELIX 11 11 HIS A 271 ALA A 299 1 29 HELIX 12 12 PRO A 327 SER A 352 1 26 HELIX 13 13 TYR A 361 LEU A 387 1 27 HELIX 14 14 ALA A 388 ILE A 391 5 4 HELIX 15 15 ASN A 394 GLN A 403 1 10 HELIX 16 16 LYS A 404 LEU A 408 5 5 HELIX 17 17 ALA A 409 GLY A 417 1 9 HELIX 18 18 TYR A 418 GLU A 423 1 6 HELIX 19 19 THR A 434 LEU A 442 1 9 HELIX 20 20 THR A 446 VAL A 454 1 9 HELIX 21 21 VAL A 455 LYS A 461 1 7 HELIX 22 22 GLY B 22 PHE B 32 1 11 HELIX 23 23 PRO B 42 LEU B 63 1 22 HELIX 24 24 PRO B 67 GLN B 83 1 17 HELIX 25 25 TRP B 86 PHE B 90 5 5 HELIX 26 26 GLY B 100 LEU B 119 1 20 HELIX 27 27 SER B 139 ARG B 159 1 21 HELIX 28 28 ARG B 159 PHE B 178 1 20 HELIX 29 29 LEU B 197 LYS B 220 1 24 HELIX 30 30 ARG B 241 GLY B 255 1 15 HELIX 31 31 PHE B 265 ALA B 270 1 6 HELIX 32 32 HIS B 271 SER B 300 1 30 HELIX 33 33 PRO B 327 SER B 352 1 26 HELIX 34 34 TYR B 361 LEU B 387 1 27 HELIX 35 35 ALA B 388 ILE B 391 5 4 HELIX 36 36 ASN B 394 LYS B 404 1 11 HELIX 37 37 ASN B 405 LEU B 408 5 4 HELIX 38 38 ALA B 409 GLY B 417 1 9 HELIX 39 39 GLY B 417 GLU B 431 1 15 HELIX 40 40 THR B 434 LEU B 442 1 9 HELIX 41 41 GLU B 448 VAL B 454 1 7 HELIX 42 42 VAL B 455 LYS B 461 1 7 SHEET 1 A 2 ILE A 5 ASP A 8 0 SHEET 2 A 2 GLY A 11 ARG A 14 -1 O VAL A 13 N GLU A 6 SHEET 1 B 2 VAL A 182 THR A 187 0 SHEET 2 B 2 MET A 190 THR A 196 -1 O ILE A 195 N LYS A 183 SHEET 1 C 2 ASN A 224 LEU A 225 0 SHEET 2 C 2 ARG A 259 VAL A 260 1 O ARG A 259 N LEU A 225 SHEET 1 D 2 ILE A 309 THR A 310 0 SHEET 2 D 2 GLU A 392 PRO A 393 -1 O GLU A 392 N THR A 310 SHEET 1 E 2 ILE B 5 ASP B 8 0 SHEET 2 E 2 GLY B 11 ARG B 14 -1 O VAL B 13 N GLU B 6 SHEET 1 F 2 VAL B 182 THR B 187 0 SHEET 2 F 2 MET B 190 THR B 196 -1 O ILE B 195 N LYS B 183 SHEET 1 G 2 ASN B 224 LEU B 225 0 SHEET 2 G 2 ARG B 259 VAL B 260 1 O ARG B 259 N LEU B 225 SHEET 1 H 2 ILE B 309 THR B 310 0 SHEET 2 H 2 GLU B 392 PRO B 393 -1 O GLU B 392 N THR B 310 CISPEP 1 GLY A 301 PRO A 302 0 0.31 CISPEP 2 GLY B 301 PRO B 302 0 0.50 CRYST1 125.336 140.122 135.372 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007387 0.00000