PDB Short entry for 1VEV HEADER HYDROLASE 06-APR-04 1VEV TITLE CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM LEPTOSPIRA INTERROGANS TITLE 2 (LIPDF) AT PH6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIPDF, PDF, POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS; SOURCE 3 ORGANISM_TAXID: 173; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CLOSED CONFORMATION, MES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHOU,X.SONG,Y.LI,W.GONG REVDAT 4 25-OCT-23 1VEV 1 REMARK LINK REVDAT 3 24-FEB-09 1VEV 1 VERSN REVDAT 2 23-JAN-07 1VEV 1 JRNL REVDAT 1 23-AUG-05 1VEV 0 JRNL AUTH Z.ZHOU,X.SONG,W.GONG JRNL TITL NOVEL CONFORMATIONAL STATES OF PEPTIDE DEFORMYLASE FROM JRNL TITL 2 PATHOGENIC BACTERIUM LEPTOSPIRA INTERROGANS: IMPLICATIONS JRNL TITL 3 FOR POPULATION SHIFT JRNL REF J.BIOL.CHEM. V. 280 42391 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16239225 JRNL DOI 10.1074/JBC.M506370200 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 21663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.384 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000006541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.20 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 43.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1SV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M FORMATE SODIUM, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.52000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.09600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.26000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.09600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.78000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.09600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.26000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.09600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.09600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 150.78000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT 1 IS GENERATED BY CHAIN A (X,Y,Z (1_555) REMARK 300 ,1-Y,1-X,1/2-Z(8_665)). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 82.19200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 82.19200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 100.52000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 172 REMARK 465 HIS A 173 REMARK 465 ASN A 174 REMARK 465 VAL A 175 REMARK 465 LEU A 176 REMARK 465 ASP A 177 REMARK 465 SER B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 VAL B 175 REMARK 465 LEU B 176 REMARK 465 ASP B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 39 OD1 OD2 REMARK 470 SER A 65 OG REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 THR B 27 OG1 CG2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 39 OD1 OD2 REMARK 470 SER B 65 OG REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -9.12 -59.06 REMARK 500 ILE A 25 1.30 -66.94 REMARK 500 SER A 65 -58.24 -140.77 REMARK 500 GLU A 66 117.77 57.64 REMARK 500 THR A 74 140.22 -27.40 REMARK 500 ASP A 130 85.73 -158.48 REMARK 500 LEU A 162 69.90 -106.88 REMARK 500 ASP A 170 0.53 -67.92 REMARK 500 SER B 65 -67.71 -121.89 REMARK 500 GLU B 66 97.75 71.92 REMARK 500 ASP B 130 76.34 -158.14 REMARK 500 ASP B 170 -13.62 -46.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 HIS A 143 NE2 111.0 REMARK 620 3 HIS A 147 NE2 97.9 107.0 REMARK 620 4 FMT A1800 O1 93.6 108.2 135.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 101 SG REMARK 620 2 HIS B 143 NE2 119.3 REMARK 620 3 HIS B 147 NE2 97.7 111.8 REMARK 620 4 FMT B2800 O2 96.8 119.7 108.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 2716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 3716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 2800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SV2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIPDF AT PH7.5 REMARK 900 RELATED ID: 1RN5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LIPDF AT PH3.0 REMARK 900 RELATED ID: 1VEY RELATED DB: PDB REMARK 900 LIPDF AT PH7.0 REMARK 900 RELATED ID: 1VEZ RELATED DB: PDB REMARK 900 LIPDF AT PH8.0 DBREF 1VEV A 1 177 UNP Q93LE9 DEF_LEPIN 2 178 DBREF 1VEV B 1 177 UNP Q93LE9 DEF_LEPIN 2 178 SEQRES 1 A 177 SER VAL ARG LYS ILE LEU ARG MET GLY ASP PRO ILE LEU SEQRES 2 A 177 ARG LYS ILE SER GLU PRO VAL THR GLU ASP GLU ILE GLN SEQRES 3 A 177 THR LYS GLU PHE LYS LYS LEU ILE ARG ASP MET PHE ASP SEQRES 4 A 177 THR MET ARG HIS ALA GLU GLY VAL GLY LEU ALA ALA PRO SEQRES 5 A 177 GLN ILE GLY ILE LEU LYS GLN ILE VAL VAL VAL GLY SER SEQRES 6 A 177 GLU ASP ASN GLU ARG TYR PRO GLY THR PRO ASP VAL PRO SEQRES 7 A 177 GLU ARG ILE ILE LEU ASN PRO VAL ILE THR PRO LEU THR SEQRES 8 A 177 LYS ASP THR SER GLY PHE TRP GLU GLY CYS LEU SER VAL SEQRES 9 A 177 PRO GLY MET ARG GLY TYR VAL GLU ARG PRO ASN GLN ILE SEQRES 10 A 177 ARG MET GLN TRP MET ASP GLU LYS GLY ASN GLN PHE ASP SEQRES 11 A 177 GLU THR ILE ASP GLY TYR LYS ALA ILE VAL TYR GLN HIS SEQRES 12 A 177 GLU CYS ASP HIS LEU GLN GLY ILE LEU TYR VAL ASP ARG SEQRES 13 A 177 LEU LYS ASP THR LYS LEU PHE GLY PHE ASN GLU THR LEU SEQRES 14 A 177 ASP SER SER HIS ASN VAL LEU ASP SEQRES 1 B 177 SER VAL ARG LYS ILE LEU ARG MET GLY ASP PRO ILE LEU SEQRES 2 B 177 ARG LYS ILE SER GLU PRO VAL THR GLU ASP GLU ILE GLN SEQRES 3 B 177 THR LYS GLU PHE LYS LYS LEU ILE ARG ASP MET PHE ASP SEQRES 4 B 177 THR MET ARG HIS ALA GLU GLY VAL GLY LEU ALA ALA PRO SEQRES 5 B 177 GLN ILE GLY ILE LEU LYS GLN ILE VAL VAL VAL GLY SER SEQRES 6 B 177 GLU ASP ASN GLU ARG TYR PRO GLY THR PRO ASP VAL PRO SEQRES 7 B 177 GLU ARG ILE ILE LEU ASN PRO VAL ILE THR PRO LEU THR SEQRES 8 B 177 LYS ASP THR SER GLY PHE TRP GLU GLY CYS LEU SER VAL SEQRES 9 B 177 PRO GLY MET ARG GLY TYR VAL GLU ARG PRO ASN GLN ILE SEQRES 10 B 177 ARG MET GLN TRP MET ASP GLU LYS GLY ASN GLN PHE ASP SEQRES 11 B 177 GLU THR ILE ASP GLY TYR LYS ALA ILE VAL TYR GLN HIS SEQRES 12 B 177 GLU CYS ASP HIS LEU GLN GLY ILE LEU TYR VAL ASP ARG SEQRES 13 B 177 LEU LYS ASP THR LYS LEU PHE GLY PHE ASN GLU THR LEU SEQRES 14 B 177 ASP SER SER HIS ASN VAL LEU ASP HET ZN A1513 1 HET MES A1716 12 HET MES A3716 12 HET FMT A1800 3 HET ZN B2513 1 HET MES B2716 12 HET FMT B2800 3 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM FMT FORMIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MES 3(C6 H13 N O4 S) FORMUL 6 FMT 2(C H2 O2) FORMUL 10 HOH *210(H2 O) HELIX 1 1 ASP A 10 LYS A 15 5 6 HELIX 2 2 ASP A 23 GLN A 26 5 4 HELIX 3 3 THR A 27 GLU A 45 1 19 HELIX 4 4 PRO A 52 GLY A 55 5 4 HELIX 5 5 GLY A 135 GLN A 149 1 15 HELIX 6 6 LEU A 152 LEU A 157 5 6 HELIX 7 7 ASN A 166 ASP A 170 1 5 HELIX 8 8 ASP B 10 LYS B 15 5 6 HELIX 9 9 ASP B 23 GLN B 26 5 4 HELIX 10 10 THR B 27 ARG B 42 1 16 HELIX 11 11 HIS B 43 GLU B 45 5 3 HELIX 12 12 PRO B 52 GLY B 55 5 4 HELIX 13 13 GLY B 135 GLN B 149 1 15 HELIX 14 14 LEU B 152 LEU B 157 5 6 HELIX 15 15 ASN B 166 ASP B 170 1 5 SHEET 1 A 5 GLY A 48 ALA A 50 0 SHEET 2 A 5 ILE A 60 VAL A 63 -1 O VAL A 62 N LEU A 49 SHEET 3 A 5 ARG A 80 PRO A 89 -1 O ILE A 82 N VAL A 61 SHEET 4 A 5 GLN A 116 MET A 122 -1 O ARG A 118 N THR A 88 SHEET 5 A 5 GLN A 128 ASP A 134 -1 O ILE A 133 N ILE A 117 SHEET 1 B 3 PHE A 97 CYS A 101 0 SHEET 2 B 3 VAL A 104 VAL A 111 -1 O VAL A 111 N PHE A 97 SHEET 3 B 3 PHE A 163 PHE A 165 -1 O GLY A 164 N ARG A 108 SHEET 1 C 5 GLY B 48 ALA B 50 0 SHEET 2 C 5 ILE B 60 VAL B 63 -1 O VAL B 62 N LEU B 49 SHEET 3 C 5 ARG B 80 PRO B 89 -1 O ILE B 82 N VAL B 61 SHEET 4 C 5 GLN B 116 MET B 122 -1 O ARG B 118 N THR B 88 SHEET 5 C 5 GLN B 128 ASP B 134 -1 O ILE B 133 N ILE B 117 SHEET 1 D 3 PHE B 97 GLU B 99 0 SHEET 2 D 3 MET B 107 VAL B 111 -1 O GLY B 109 N GLU B 99 SHEET 3 D 3 PHE B 163 PHE B 165 -1 O GLY B 164 N ARG B 108 LINK SG CYS A 101 ZN ZN A1513 1555 1555 2.76 LINK NE2 HIS A 143 ZN ZN A1513 1555 1555 2.28 LINK NE2 HIS A 147 ZN ZN A1513 1555 1555 2.07 LINK ZN ZN A1513 O1 FMT A1800 1555 1555 2.50 LINK SG CYS B 101 ZN ZN B2513 1555 1555 2.57 LINK NE2 HIS B 143 ZN ZN B2513 1555 1555 2.13 LINK NE2 HIS B 147 ZN ZN B2513 1555 1555 2.15 LINK ZN ZN B2513 O2 FMT B2800 1555 1555 2.46 SITE 1 AC1 5 GLN A 53 CYS A 101 HIS A 143 HIS A 147 SITE 2 AC1 5 FMT A1800 SITE 1 AC2 5 GLN B 53 CYS B 101 HIS B 143 HIS B 147 SITE 2 AC2 5 FMT B2800 SITE 1 AC3 15 GLY A 46 VAL A 47 GLY A 48 ARG A 70 SITE 2 AC3 15 TYR A 71 PHE A 97 GLY A 100 CYS A 101 SITE 3 AC3 15 LEU A 102 TYR A 136 ILE A 139 VAL A 140 SITE 4 AC3 15 HIS A 143 FMT A1800 HOH A3805 SITE 1 AC4 13 GLY B 46 VAL B 47 ARG B 70 TYR B 71 SITE 2 AC4 13 PHE B 97 GLU B 99 GLY B 100 CYS B 101 SITE 3 AC4 13 LEU B 102 TYR B 136 ILE B 139 HIS B 143 SITE 4 AC4 13 FMT B2800 SITE 1 AC5 10 PRO A 78 ARG A 80 LYS A 137 HOH A3778 SITE 2 AC5 10 HOH A3782 HOH A3790 HOH A3798 PHE B 38 SITE 3 AC5 10 ARG B 42 GLU B 79 SITE 1 AC6 7 GLY A 48 LEU A 49 GLN A 53 LEU A 102 SITE 2 AC6 7 GLU A 144 ZN A1513 MES A1716 SITE 1 AC7 8 GLY B 48 GLN B 53 LEU B 102 HIS B 143 SITE 2 AC7 8 GLU B 144 HIS B 147 ZN B2513 MES B2716 CRYST1 82.192 82.192 201.040 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012167 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004974 0.00000