PDB Short entry for 1VGO HEADER PROTON TRANSPORT 28-APR-04 1VGO TITLE CRYSTAL STRUCTURE OF ARCHAERHODOPSIN-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAERHODOPSIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AR 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SP.; SOURCE 3 ORGANISM_TAXID: 29285; SOURCE 4 STRAIN: AUS-2 KEYWDS RETINAL-BINDING PROTEIN, PROTON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.YOSHIMURA,N.ENAMI,M.MURAKAMI,H.OKUMURA,K.IHARA,T.KOUYAMA REVDAT 4 25-OCT-23 1VGO 1 HETSYN REVDAT 3 29-JUL-20 1VGO 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 10-JUN-08 1VGO 1 JRNL VERSN REVDAT 1 04-OCT-05 1VGO 0 JRNL AUTH N.ENAMI,K.YOSHIMURA,M.MURAKAMI,H.OKUMURA,K.IHARA,T.KOUYAMA JRNL TITL CRYSTAL STRUCTURES OF ARCHAERHODOPSIN-1 AND -2: COMMON JRNL TITL 2 STRUCTURAL MOTIF IN ARCHAEAL LIGHT-DRIVEN PROTON PUMPS JRNL REF J.MOL.BIOL. V. 358 675 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16540121 JRNL DOI 10.1016/J.JMB.2006.02.032 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 26954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3260 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 164 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 307 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.62000 REMARK 3 B22 (A**2) : -3.72000 REMARK 3 B33 (A**2) : 9.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 69.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : SO4.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000006595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 120.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : 0.49300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1UAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CHLORIDE, REMARK 280 NONYL GLUCOSIDE, SODIUM CITRATE, PH 5.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.05000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.74000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.05000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.74000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 PHE A 4 REMARK 465 THR A 238 REMARK 465 GLU A 239 REMARK 465 ALA A 240 REMARK 465 PRO A 241 REMARK 465 GLU A 242 REMARK 465 PRO A 243 REMARK 465 SER A 244 REMARK 465 ALA A 245 REMARK 465 GLY A 246 REMARK 465 ALA A 247 REMARK 465 ASP A 248 REMARK 465 ALA A 249 REMARK 465 SER A 250 REMARK 465 ALA A 251 REMARK 465 ALA A 252 REMARK 465 ASP A 253 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 PHE B 4 REMARK 465 ALA B 240 REMARK 465 PRO B 241 REMARK 465 GLU B 242 REMARK 465 PRO B 243 REMARK 465 SER B 244 REMARK 465 ALA B 245 REMARK 465 GLY B 246 REMARK 465 ALA B 247 REMARK 465 ASP B 248 REMARK 465 ALA B 249 REMARK 465 SER B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 ASP B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 159 -85.05 -119.28 REMARK 500 LEU B 75 -179.89 -64.28 REMARK 500 THR B 159 -78.84 -118.31 REMARK 500 SER B 160 -70.01 -52.08 REMARK 500 THR B 238 -151.69 54.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UAZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAERHODOPSIN-1 DBREF 1VGO A 1 253 UNP P29563 BACR2_HALS2 7 259 DBREF 1VGO B 1 253 UNP P29563 BACR2_HALS2 7 259 SEQRES 1 A 253 GLN ALA GLY PHE ASP LEU LEU ASN ASP GLY ARG PRO GLU SEQRES 2 A 253 THR LEU TRP LEU GLY ILE GLY THR LEU LEU MET LEU ILE SEQRES 3 A 253 GLY THR PHE TYR PHE ILE ALA ARG GLY TRP GLY VAL THR SEQRES 4 A 253 ASP LYS GLU ALA ARG GLU TYR TYR ALA ILE THR ILE LEU SEQRES 5 A 253 VAL PRO GLY ILE ALA SER ALA ALA TYR LEU ALA MET PHE SEQRES 6 A 253 PHE GLY ILE GLY VAL THR GLU VAL GLU LEU ALA SER GLY SEQRES 7 A 253 THR VAL LEU ASP ILE TYR TYR ALA ARG TYR ALA ASP TRP SEQRES 8 A 253 LEU PHE THR THR PRO LEU LEU LEU LEU ASP LEU ALA LEU SEQRES 9 A 253 LEU ALA LYS VAL ASP ARG VAL THR ILE GLY THR LEU ILE SEQRES 10 A 253 GLY VAL ASP ALA LEU MET ILE VAL THR GLY LEU ILE GLY SEQRES 11 A 253 ALA LEU SER LYS THR PRO LEU ALA ARG TYR THR TRP TRP SEQRES 12 A 253 LEU PHE SER THR ILE ALA PHE LEU PHE VAL LEU TYR TYR SEQRES 13 A 253 LEU LEU THR SER LEU ARG SER ALA ALA ALA LYS ARG SER SEQRES 14 A 253 GLU GLU VAL ARG SER THR PHE ASN THR LEU THR ALA LEU SEQRES 15 A 253 VAL ALA VAL LEU TRP THR ALA TYR PRO ILE LEU TRP ILE SEQRES 16 A 253 VAL GLY THR GLU GLY ALA GLY VAL VAL GLY LEU GLY ILE SEQRES 17 A 253 GLU THR LEU ALA PHE MET VAL LEU ASP VAL THR ALA LYS SEQRES 18 A 253 VAL GLY PHE GLY PHE VAL LEU LEU ARG SER ARG ALA ILE SEQRES 19 A 253 LEU GLY GLU THR GLU ALA PRO GLU PRO SER ALA GLY ALA SEQRES 20 A 253 ASP ALA SER ALA ALA ASP SEQRES 1 B 253 GLN ALA GLY PHE ASP LEU LEU ASN ASP GLY ARG PRO GLU SEQRES 2 B 253 THR LEU TRP LEU GLY ILE GLY THR LEU LEU MET LEU ILE SEQRES 3 B 253 GLY THR PHE TYR PHE ILE ALA ARG GLY TRP GLY VAL THR SEQRES 4 B 253 ASP LYS GLU ALA ARG GLU TYR TYR ALA ILE THR ILE LEU SEQRES 5 B 253 VAL PRO GLY ILE ALA SER ALA ALA TYR LEU ALA MET PHE SEQRES 6 B 253 PHE GLY ILE GLY VAL THR GLU VAL GLU LEU ALA SER GLY SEQRES 7 B 253 THR VAL LEU ASP ILE TYR TYR ALA ARG TYR ALA ASP TRP SEQRES 8 B 253 LEU PHE THR THR PRO LEU LEU LEU LEU ASP LEU ALA LEU SEQRES 9 B 253 LEU ALA LYS VAL ASP ARG VAL THR ILE GLY THR LEU ILE SEQRES 10 B 253 GLY VAL ASP ALA LEU MET ILE VAL THR GLY LEU ILE GLY SEQRES 11 B 253 ALA LEU SER LYS THR PRO LEU ALA ARG TYR THR TRP TRP SEQRES 12 B 253 LEU PHE SER THR ILE ALA PHE LEU PHE VAL LEU TYR TYR SEQRES 13 B 253 LEU LEU THR SER LEU ARG SER ALA ALA ALA LYS ARG SER SEQRES 14 B 253 GLU GLU VAL ARG SER THR PHE ASN THR LEU THR ALA LEU SEQRES 15 B 253 VAL ALA VAL LEU TRP THR ALA TYR PRO ILE LEU TRP ILE SEQRES 16 B 253 VAL GLY THR GLU GLY ALA GLY VAL VAL GLY LEU GLY ILE SEQRES 17 B 253 GLU THR LEU ALA PHE MET VAL LEU ASP VAL THR ALA LYS SEQRES 18 B 253 VAL GLY PHE GLY PHE VAL LEU LEU ARG SER ARG ALA ILE SEQRES 19 B 253 LEU GLY GLU THR GLU ALA PRO GLU PRO SER ALA GLY ALA SEQRES 20 B 253 ASP ALA SER ALA ALA ASP HET BNG A 301 21 HET BNG A 302 21 HET BNG A 303 21 HET BNG A 304 21 HET BNG A 305 21 HET BNG A 306 21 HET BNG A 307 21 HET BNG A 308 21 HET BNG A 309 21 HET SO4 A 400 5 HET RET A 260 20 HET BNG B 310 21 HET BNG B 311 21 HET BNG B 312 21 HET SO4 B 401 5 HET SO4 B 402 5 HET RET B 261 20 HETNAM BNG NONYL BETA-D-GLUCOPYRANOSIDE HETNAM SO4 SULFATE ION HETNAM RET RETINAL HETSYN BNG BETA-NONYLGLUCOSIDE; NONYL BETA-D-GLUCOSIDE; NONYL D- HETSYN 2 BNG GLUCOSIDE; NONYL GLUCOSIDE FORMUL 3 BNG 12(C15 H30 O6) FORMUL 12 SO4 3(O4 S 2-) FORMUL 13 RET 2(C20 H28 O) FORMUL 20 HOH *29(H2 O) HELIX 1 1 GLU A 13 TRP A 36 1 24 HELIX 2 2 ASP A 40 PHE A 66 1 27 HELIX 3 3 TYR A 85 LYS A 107 1 23 HELIX 4 4 ASP A 109 LEU A 132 1 24 HELIX 5 5 THR A 135 THR A 159 1 25 HELIX 6 6 THR A 159 LYS A 167 1 9 HELIX 7 7 SER A 169 VAL A 196 1 28 HELIX 8 8 GLY A 205 ARG A 230 1 26 HELIX 9 9 SER A 231 LEU A 235 5 5 HELIX 10 10 GLU B 13 TRP B 36 1 24 HELIX 11 11 ASP B 40 PHE B 66 1 27 HELIX 12 12 TYR B 85 LYS B 107 1 23 HELIX 13 13 ASP B 109 LEU B 132 1 24 HELIX 14 14 THR B 135 THR B 159 1 25 HELIX 15 15 THR B 159 LYS B 167 1 9 HELIX 16 16 SER B 169 GLY B 197 1 29 HELIX 17 17 GLY B 205 ARG B 230 1 26 HELIX 18 18 SER B 231 LEU B 235 5 5 SHEET 1 A 2 VAL A 70 GLU A 74 0 SHEET 2 A 2 VAL A 80 TYR A 84 -1 O ILE A 83 N THR A 71 SHEET 1 B 2 VAL B 70 GLU B 74 0 SHEET 2 B 2 VAL B 80 TYR B 84 -1 O LEU B 81 N VAL B 73 LINK NZ LYS A 221 C15 RET A 260 1555 1555 1.35 LINK NZ LYS B 221 C15 RET B 261 1555 1555 1.36 CRYST1 122.880 139.480 108.100 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009251 0.00000