PDB Short entry for 1VJZ HEADER ENDOGLUCANASE 08-APR-04 1VJZ TITLE CRYSTAL STRUCTURE OF ENDOGLUCANASE (TM1752) FROM THERMOTOGA MARITIMA TITLE 2 AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1752, ENDOGLUCANASE, STRUCTURAL GENOMICS, JCSG, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 1VJZ 1 SEQADV LINK REVDAT 7 04-OCT-17 1VJZ 1 REMARK REVDAT 6 13-JUL-11 1VJZ 1 VERSN REVDAT 5 21-JUL-09 1VJZ 1 REMARK REVDAT 4 24-FEB-09 1VJZ 1 VERSN REVDAT 3 28-MAR-06 1VJZ 1 JRNL REVDAT 2 18-JAN-05 1VJZ 1 AUTHOR KEYWDS REMARK REVDAT 1 13-APR-04 1VJZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ENDOGLUCANASE (TM1752) FROM THERMOTOGA JRNL TITL 2 MARITIMA AT 2.05 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 25186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1405 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -2.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2861 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3884 ; 1.433 ; 1.912 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 6.590 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.613 ;23.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;14.488 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2211 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1368 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 244 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1678 ; 2.075 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2662 ; 2.967 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1398 ; 5.473 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1222 ; 7.209 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8640 26.6460 47.7220 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0212 REMARK 3 T33: 0.0761 T12: -0.0335 REMARK 3 T13: 0.0072 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.5077 L22: 0.6271 REMARK 3 L33: 3.6131 L12: 0.1897 REMARK 3 L13: -0.3738 L23: -0.7043 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: -0.0042 S13: -0.0197 REMARK 3 S21: -0.0303 S22: 0.0039 S23: -0.0145 REMARK 3 S31: 0.2778 S32: -0.0023 S33: 0.0454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000001934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-04; 20-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-BM; 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980502; 0.964063, 0.979292 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR; ROSENBAUM-ROCK REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : WATER COOLED, SAGITALLY FOCUSING REMARK 200 2ND CRYSTAL, ROSENBAUM-ROCK REMARK 200 VERTICAL FOCUSING MIRROR; WATER REMARK 200 COOLED, SAGITALLY FOCUSING 2ND REMARK 200 CRYSTAL, ROSENBAUM-ROCK VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : APS-1; APS-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.820 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.75 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE PH 9, 2% DIOXANE, 10% PEG REMARK 280 -20000, PH 9.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K. BICINE PH 9, 2% DIOXANE, 10% PEG-20000, PH 9.0, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.09450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.34200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 151.64175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.34200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.54725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.34200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 151.64175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.34200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.34200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.54725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.09450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CE NZ REMARK 470 GLU A 107 CD OE1 OE2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU A 236 CD OE1 OE2 REMARK 470 GLN A 250 CD OE1 NE2 REMARK 470 LYS A 306 CE NZ REMARK 470 GLU A 309 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 51 -154.66 -127.71 REMARK 500 GLU A 139 70.70 50.35 REMARK 500 ASP A 144 108.54 -160.38 REMARK 500 LEU A 188 60.54 -108.49 REMARK 500 TYR A 263 -178.87 -68.10 REMARK 500 PHE A 294 -72.07 -94.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283607 RELATED DB: TARGETDB DBREF 1VJZ A 1 329 UNP Q9X274 Q9X274_THEMA 1 329 SEQADV 1VJZ MET A -11 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ GLY A -10 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ SER A -9 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ ASP A -8 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ LYS A -7 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ ILE A -6 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ HIS A -5 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ HIS A -4 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ HIS A -3 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ HIS A -2 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ HIS A -1 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ HIS A 0 UNP Q9X274 EXPRESSION TAG SEQADV 1VJZ MSE A 1 UNP Q9X274 MET 1 MODIFIED RESIDUE SEQADV 1VJZ MSE A 33 UNP Q9X274 MET 33 MODIFIED RESIDUE SEQADV 1VJZ MSE A 45 UNP Q9X274 MET 45 MODIFIED RESIDUE SEQADV 1VJZ MSE A 148 UNP Q9X274 MET 148 MODIFIED RESIDUE SEQADV 1VJZ MSE A 260 UNP Q9X274 MET 260 MODIFIED RESIDUE SEQADV 1VJZ MSE A 322 UNP Q9X274 MET 322 MODIFIED RESIDUE SEQRES 1 A 341 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 341 ASN ASN THR ILE PRO ARG TRP ARG GLY PHE ASN LEU LEU SEQRES 3 A 341 GLU ALA PHE SER ILE LYS SER THR GLY ASN PHE LYS GLU SEQRES 4 A 341 GLU ASP PHE LEU TRP MSE ALA GLN TRP ASP PHE ASN PHE SEQRES 5 A 341 VAL ARG ILE PRO MSE CYS HIS LEU LEU TRP SER ASP ARG SEQRES 6 A 341 GLY ASN PRO PHE ILE ILE ARG GLU ASP PHE PHE GLU LYS SEQRES 7 A 341 ILE ASP ARG VAL ILE PHE TRP GLY GLU LYS TYR GLY ILE SEQRES 8 A 341 HIS ILE CYS ILE SER LEU HIS ARG ALA PRO GLY TYR SER SEQRES 9 A 341 VAL ASN LYS GLU VAL GLU GLU LYS THR ASN LEU TRP LYS SEQRES 10 A 341 ASP GLU THR ALA GLN GLU ALA PHE ILE HIS HIS TRP SER SEQRES 11 A 341 PHE ILE ALA ARG ARG TYR LYS GLY ILE SER SER THR HIS SEQRES 12 A 341 LEU SER PHE ASN LEU ILE ASN GLU PRO PRO PHE PRO ASP SEQRES 13 A 341 PRO GLN ILE MSE SER VAL GLU ASP HIS ASN SER LEU ILE SEQRES 14 A 341 LYS ARG THR ILE THR GLU ILE ARG LYS ILE ASP PRO GLU SEQRES 15 A 341 ARG LEU ILE ILE ILE ASP GLY LEU GLY TYR GLY ASN ILE SEQRES 16 A 341 PRO VAL ASP ASP LEU THR ILE GLU ASN THR VAL GLN SER SEQRES 17 A 341 CYS ARG GLY TYR ILE PRO PHE SER VAL THR HIS TYR LYS SEQRES 18 A 341 ALA GLU TRP VAL ASP SER LYS ASP PHE PRO VAL PRO GLU SEQRES 19 A 341 TRP PRO ASN GLY TRP HIS PHE GLY GLU TYR TRP ASN ARG SEQRES 20 A 341 GLU LYS LEU LEU GLU HIS TYR LEU THR TRP ILE LYS LEU SEQRES 21 A 341 ARG GLN LYS GLY ILE GLU VAL PHE CYS GLY GLU MSE GLY SEQRES 22 A 341 ALA TYR ASN LYS THR PRO HIS ASP VAL VAL LEU LYS TRP SEQRES 23 A 341 LEU GLU ASP LEU LEU GLU ILE PHE LYS THR LEU ASN ILE SEQRES 24 A 341 GLY PHE ALA LEU TRP ASN PHE ARG GLY PRO PHE GLY ILE SEQRES 25 A 341 LEU ASP SER GLU ARG LYS ASP VAL GLU TYR GLU GLU TRP SEQRES 26 A 341 TYR GLY HIS LYS LEU ASP ARG LYS MSE LEU GLU LEU LEU SEQRES 27 A 341 ARG LYS TYR MODRES 1VJZ MSE A 33 MET SELENOMETHIONINE MODRES 1VJZ MSE A 45 MET SELENOMETHIONINE MODRES 1VJZ MSE A 148 MET SELENOMETHIONINE MODRES 1VJZ MSE A 260 MET SELENOMETHIONINE MODRES 1VJZ MSE A 322 MET SELENOMETHIONINE HET MSE A 33 8 HET MSE A 45 8 HET MSE A 148 8 HET MSE A 260 8 HET MSE A 322 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *212(H2 O) HELIX 1 1 LYS A 26 TRP A 36 1 11 HELIX 2 2 LEU A 48 TRP A 50 5 3 HELIX 3 3 ARG A 60 ASP A 62 5 3 HELIX 4 4 PHE A 63 GLY A 78 1 16 HELIX 5 5 ASP A 106 LYS A 125 1 20 HELIX 6 6 SER A 149 ASP A 168 1 20 HELIX 7 7 GLY A 177 ASN A 182 1 6 HELIX 8 8 PRO A 202 HIS A 207 1 6 HELIX 9 9 ASN A 234 LYS A 247 1 14 HELIX 10 10 LEU A 248 GLY A 252 5 5 HELIX 11 11 PRO A 267 LEU A 285 1 19 HELIX 12 12 ASP A 319 TYR A 329 1 11 SHEET 1 A10 TYR A 91 SER A 92 0 SHEET 2 A10 HIS A 80 ALA A 88 -1 N ALA A 88 O TYR A 91 SHEET 3 A10 LEU A 132 ASN A 135 1 O ASN A 135 N ILE A 83 SHEET 4 A10 ILE A 173 ASP A 176 1 O ILE A 174 N PHE A 134 SHEET 5 A10 THR A 193 GLY A 199 1 O VAL A 194 N ILE A 175 SHEET 6 A10 GLU A 254 MSE A 260 1 O GLU A 259 N GLY A 199 SHEET 7 A10 GLY A 288 LEU A 291 1 O GLY A 288 N CYS A 257 SHEET 8 A10 ARG A 9 ASN A 12 1 N GLY A 10 O LEU A 291 SHEET 9 A10 PHE A 40 CYS A 46 1 O ARG A 42 N PHE A 11 SHEET 10 A10 HIS A 80 ALA A 88 1 O SER A 84 N MSE A 45 SHEET 1 B 2 GLY A 226 HIS A 228 0 SHEET 2 B 2 GLU A 231 TRP A 233 -1 O TRP A 233 N GLY A 226 SHEET 1 C 2 GLU A 311 TRP A 313 0 SHEET 2 C 2 HIS A 316 LEU A 318 -1 O LEU A 318 N GLU A 311 LINK C TRP A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N ALA A 34 1555 1555 1.34 LINK C PRO A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N CYS A 46 1555 1555 1.33 LINK C ILE A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N SER A 149 1555 1555 1.33 LINK C GLU A 259 N MSE A 260 1555 1555 1.33 LINK C MSE A 260 N GLY A 261 1555 1555 1.33 LINK C LYS A 321 N MSE A 322 1555 1555 1.33 LINK C MSE A 322 N LEU A 323 1555 1555 1.33 CISPEP 1 ILE A 201 PRO A 202 0 3.57 CISPEP 2 TRP A 223 PRO A 224 0 -2.54 CRYST1 64.684 64.684 202.189 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004946 0.00000